moab::DebugOutput Class Reference

Utility class for printing debug output. More...

#include <DebugOutput.hpp>

Collaboration diagram for moab::DebugOutput:

Public Member Functions
	DebugOutput (DebugOutputStream *str, unsigned verbosity=0)
	DebugOutput (DebugOutputStream *str, int rank, unsigned verbosity=0)
	DebugOutput (FILE *str, unsigned verbosity=0)
	DebugOutput (FILE *str, int rank, unsigned verbosity=0)
	DebugOutput (std::ostream &str, unsigned verbosity=0)
	DebugOutput (std::ostream &str, int rank, unsigned verbosity=0)
	DebugOutput (const char *pfx, DebugOutputStream *str, unsigned verbosity=0)
	DebugOutput (const char *pfx, DebugOutputStream *str, int rank, unsigned verbosity=0)
	DebugOutput (const char *pfx, FILE *str, unsigned verbosity=0)
	DebugOutput (const char *pfx, FILE *str, int rank, unsigned verbosity=0)
	DebugOutput (const char *pfx, std::ostream &str, unsigned verbosity=0)
	DebugOutput (const char *pfx, std::ostream &str, int rank, unsigned verbosity=0)
	DebugOutput (const DebugOutput &copy)
DebugOutput &	operator= (const DebugOutput &copy)
	~DebugOutput ()
bool	have_rank () const
	Check if MPI rank has been set. More...
int	get_rank () const
	Get MPI rank. More...
void	set_rank (int rank)
	Set MPI rank. More...
void	use_world_rank ()
	Set MPI rank to the rank of this proccess in MPI_COMM_WORLD, or zero if MOAB is build w/out MPI. More...
void	limit_output_to_first_N_procs (int N)
	Only print debug output from N processes. More...
unsigned	get_verbosity () const
	Get verbosity limit. More...
void	set_verbosity (unsigned val)
	Set verbosity limit. More...
const std::string &	get_prefix () const
	Get line prefix. More...
void	set_prefix (const std::string &str)
	Set line prefix. More...
void	print (int verbosity, const char *str)
	Output the specified string iff output is enabled. More...
void	print (int verbosity, const std::string &str)
	Output the specified string iff output is enabled. More...
void	printf (int verbosity, const char *fmt,...) MB_PRINTF(2)
	Output the specified printf-formatted output iff output is enabled. More...
void	tprint (int verbosity, const char *str)
	Output the specified string iff output is enabled. More...
void	tprint (int verbosity, const std::string &str)
	Output the specified string iff output is enabled. More...
void	tprintf (int verbosity, const char *fmt,...) MB_PRINTF(2)
	Output the specified printf-formatted output iff output is enabled. More...
void	print (int verbosity, const char *pfx, const Range &range)
	Print the contents of a moab::Range. More...
void	print (int verbosity, const Range &range)
	Print the contents of a moab::Range. More...
void	print_ints (int verbosity, const char *pfx, const Range &range)
	Print the contents of a moab::Range as numerical values only. More...
void	print_ints (int verbosity, const Range &range)
	Print the contents of a moab::Range as numerical values only. More...

Private Member Functions
void	tprint ()
void	list_range_real (const char *pfx, const Range &range)
void	list_ints_real (const char *pfx, const Range &range)
void	print_real (const char *buffer)
void	print_real (const std::string &str)
void	tprint_real (const char *buffer)
void	tprint_real (const std::string &str)
void	print_real (const char *buffer, va_list args1, va_list args2)
void	tprint_real (const char *buffer, va_list args1, va_list args2)
void	process_line_buffer ()
bool	check (unsigned verbosity)

Private Attributes
std::string	linePfx
DebugOutputStream *	outputImpl
int	mpiRank
unsigned	verbosityLimit
CpuTimer	cpuTi
std::vector< char >	lineBuffer

Detailed Description

Utility class for printing debug output.

This class implements line-oriented output. That is, it buffers output data until a newline is encountered, at which point it sends the output to the output stream followed by an explicit flush, and optionally prefixed with the MPI rank.

This class also implements a verbosity filter for all output. The class instance has a verbosity limit. Each request for output has an associated verbosity level. If the verbosity level for the output is is less greater than the limit then the output is discarded. By convetion a verbosity limit of zero should indicate no output. Therefore all requests for output should have an associated verbosity level greater than or equal to one.

\Note Any output not terminated with an newline character or followed by later output containing a newline character will not be flushed until the destructor is invoked. \Note C++-style IO (i.e. std::ostream) is not supported because it is necessarily inefficient for debug-type output. All formatting (e.g. converting arguments to strings, etc.) must be done even when output is disabled.

Definition at line 43 of file DebugOutput.hpp.

Constructor & Destructor Documentation

DebugOutput() [1/13]

moab::DebugOutput::DebugOutput	(	DebugOutputStream *	str,
		unsigned	verbosity = 0
	)

Parameters

str	Output stream to which to flush output
verbosity	Verbosity limit.

Definition at line 62 of file DebugOutput.cpp.

 : outputImpl( impl ), mpiRank( -1 ), verbosityLimit( verbosity )
{
 impl->referenceCount++;
 assert( impl->referenceCount > 1 );
}

References moab::DebugOutputStream::referenceCount.

DebugOutput() [2/13]

moab::DebugOutput::DebugOutput	(	DebugOutputStream *	str,
		int	rank,
		unsigned	verbosity = 0
	)

Parameters

str	Output stream to which to flush output
rank	MPI rank with which to prefix output.
verbosity	Verbosity limit.

Definition at line 68 of file DebugOutput.cpp.

 : outputImpl( impl ), mpiRank( rank ), verbosityLimit( verbosity )
{
 impl->referenceCount++;
 assert( impl->referenceCount > 1 );
}

References moab::DebugOutputStream::referenceCount.

DebugOutput() [3/13]

moab::DebugOutput::DebugOutput	(	FILE *	str,
		unsigned	verbosity = 0
	)

Parameters

str	Output stream to which to flush output
enabled	Enable output: if not true, all output operations to nothing.

Definition at line 74 of file DebugOutput.cpp.

 : outputImpl( new FILEDebugStream( impl ) ), mpiRank( -1 ), verbosityLimit( verbosity )
{
}

DebugOutput() [4/13]

moab::DebugOutput::DebugOutput	(	FILE *	str,
		int	rank,
		unsigned	verbosity = 0
	)

Parameters

str	Output stream to which to flush output
rank	MPI rank with which to prefix output.
verbosity	Verbosity limit.

Definition at line 78 of file DebugOutput.cpp.

 : outputImpl( new FILEDebugStream( impl ) ), mpiRank( rank ), verbosityLimit( verbosity )
{
}

DebugOutput() [5/13]

moab::DebugOutput::DebugOutput	(	std::ostream &	str,
		unsigned	verbosity = 0
	)

Parameters

str	Output stream to which to flush output
verbosity	Verbosity limit.

Definition at line 82 of file DebugOutput.cpp.

 : outputImpl( new CxxDebugStream( str ) ), mpiRank( -1 ), verbosityLimit( verbosity )
{
}

DebugOutput() [6/13]

moab::DebugOutput::DebugOutput	(	std::ostream &	str,
		int	rank,
		unsigned	verbosity = 0
	)

Parameters

str	Output stream to which to flush output
rank	MPI rank with which to prefix output.
verbosity	Verbosity limit.

Definition at line 86 of file DebugOutput.cpp.

 : outputImpl( new CxxDebugStream( str ) ), mpiRank( rank ), verbosityLimit( verbosity )
{
}

DebugOutput() [7/13]

moab::DebugOutput::DebugOutput	(	const char *	pfx,
		DebugOutputStream *	str,
		unsigned	verbosity = 0
	)

Parameters

pfx	Prefix for output
str	Output stream to which to flush output
verbosity	Verbosity limit.

Definition at line 90 of file DebugOutput.cpp.

 : linePfx( pfx ), outputImpl( impl ), mpiRank( -1 ), verbosityLimit( verbosity )
{
 impl->referenceCount++;
 assert( impl->referenceCount > 1 );
}

References moab::DebugOutputStream::referenceCount.

DebugOutput() [8/13]

moab::DebugOutput::DebugOutput	(	const char *	pfx,
		DebugOutputStream *	str,
		int	rank,
		unsigned	verbosity = 0
	)

Parameters

pfx	Prefix for output
str	Output stream to which to flush output
rank	MPI rank with which to prefix output.
verbosity	Verbosity limit.

Definition at line 96 of file DebugOutput.cpp.

 : linePfx( pfx ), outputImpl( impl ), mpiRank( rank ), verbosityLimit( verbosity )
{
 impl->referenceCount++;
 assert( impl->referenceCount > 1 );
}

References moab::DebugOutputStream::referenceCount.

DebugOutput() [9/13]

moab::DebugOutput::DebugOutput	(	const char *	pfx,
		FILE *	str,
		unsigned	verbosity = 0
	)

Parameters

pfx	Prefix for output
str	Output stream to which to flush output
enabled	Enable output: if not true, all output operations to nothing.

Definition at line 102 of file DebugOutput.cpp.

 : linePfx( pfx ), outputImpl( new FILEDebugStream( impl ) ), mpiRank( -1 ), verbosityLimit( verbosity )
{
}

DebugOutput() [10/13]

moab::DebugOutput::DebugOutput	(	const char *	pfx,
		FILE *	str,
		int	rank,
		unsigned	verbosity = 0
	)

Parameters

pfx	Prefix for output
str	Output stream to which to flush output
rank	MPI rank with which to prefix output.
verbosity	Verbosity limit.

Definition at line 106 of file DebugOutput.cpp.

 : linePfx( pfx ), outputImpl( new FILEDebugStream( impl ) ), mpiRank( rank ), verbosityLimit( verbosity )
{
}

DebugOutput() [11/13]

moab::DebugOutput::DebugOutput	(	const char *	pfx,
		std::ostream &	str,
		unsigned	verbosity = 0
	)

Parameters

pfx	Prefix for output
str	Output stream to which to flush output
verbosity	Verbosity limit.

Definition at line 110 of file DebugOutput.cpp.

 : linePfx( pfx ), outputImpl( new CxxDebugStream( str ) ), mpiRank( -1 ), verbosityLimit( verbosity )
{
}

DebugOutput() [12/13]

moab::DebugOutput::DebugOutput	(	const char *	pfx,
		std::ostream &	str,
		int	rank,
		unsigned	verbosity = 0
	)

Parameters

pfx	Prefix for output
str	Output stream to which to flush output
rank	MPI rank with which to prefix output.
verbosity	Verbosity limit.

Definition at line 114 of file DebugOutput.cpp.

 : linePfx( pfx ), outputImpl( new CxxDebugStream( str ) ), mpiRank( rank ), verbosityLimit( verbosity )
{
}

DebugOutput() [13/13]

moab::DebugOutput::DebugOutput

(

const DebugOutput &

copy

)

Definition at line 119 of file DebugOutput.cpp.

 : linePfx( copy.linePfx ), outputImpl( copy.outputImpl ), mpiRank( copy.mpiRank ),
 verbosityLimit( copy.verbosityLimit )
{
 outputImpl->referenceCount++;
 assert( outputImpl->referenceCount > 1 );
}

References outputImpl, and moab::DebugOutputStream::referenceCount.

~DebugOutput()

moab::DebugOutput::~DebugOutput

(

)

Destructor flushes any remaining output that wasn't followed by a newline character.

Definition at line 138 of file DebugOutput.cpp.

{
 if( !lineBuffer.empty() )
 {
 lineBuffer.push_back( '\n' );
 process_line_buffer();
 }
 if( outputImpl )
 {
 assert( outputImpl->referenceCount > 0 );
 if( !--outputImpl->referenceCount ) delete outputImpl;
 outputImpl = 0;
 }
}

References lineBuffer, outputImpl, process_line_buffer(), and moab::DebugOutputStream::referenceCount.

Member Function Documentation

check()

bool moab::DebugOutput::check ( unsigned  verbosity )

inlineprivate

Definition at line 263 of file DebugOutput.hpp.

 {
 return verbosity <= verbosityLimit;
 }

References verbosityLimit.

Referenced by print(), print_ints(), printf(), tprint(), and tprintf().

get_prefix()

const std::string& moab::DebugOutput::get_prefix ( ) const

inline

Get line prefix.

Definition at line 167 of file DebugOutput.hpp.

 {
 return linePfx;
 }

References linePfx.

get_rank()

int moab::DebugOutput::get_rank ( ) const

inline

Get MPI rank.

Definition at line 136 of file DebugOutput.hpp.

 {
 return mpiRank;
 }

References mpiRank.

Referenced by process_line_buffer().

get_verbosity()

unsigned moab::DebugOutput::get_verbosity ( ) const

inline

Get verbosity limit.

Definition at line 156 of file DebugOutput.hpp.

 {
 return verbosityLimit;
 }

References verbosityLimit.

Referenced by moab::WriteHDF5Parallel::communicate_shared_set_ids(), moab::ScdNCHelper::create_mesh(), moab::WriteHDF5Parallel::create_tag_tables(), moab::ReadHDF5::debug_barrier_line(), moab::WriteHDF5Parallel::debug_barrier_line(), moab::ParallelComm::define_mpe(), moab::ParallelComm::exchange_ghost_cells(), moab::ParallelComm::exchange_owned_mesh(), moab::ParallelComm::exchange_tags(), moab::ParallelComm::get_debug_verbosity(), moab::ParallelComm::pack_tag(), moab::ReadNC::parse_options(), moab::WriteNC::parse_options(), moab::ParallelComm::print_debug_recd(), moab::ParallelComm::print_debug_waitany(), moab::print_type_sets(), moab::ScdNCHelper::read_scd_variables_to_nonset(), moab::NCHelperGCRM::read_ucd_variables_to_nonset(), moab::NCHelperHOMME::read_ucd_variables_to_nonset(), moab::NCHelperMPAS::read_ucd_variables_to_nonset(), moab::NCHelper::read_variables_to_set(), moab::ParallelComm::recv_entities(), moab::ParallelComm::reduce_tags(), moab::ParallelComm::resolve_shared_ents(), moab::ParallelComm::send_entities(), moab::ParallelComm::send_recv_entities(), moab::ParallelComm::settle_intersection_points(), and moab::ParallelComm::unpack_buffer().

have_rank()

bool moab::DebugOutput::have_rank ( ) const

inline

Check if MPI rank has been set.

Definition at line 131 of file DebugOutput.hpp.

 {
 return mpiRank >= 0;
 }

References mpiRank.

Referenced by process_line_buffer().

limit_output_to_first_N_procs()

void moab::DebugOutput::limit_output_to_first_N_procs ( int  N )

inline

Only print debug output from N processes.

Definition at line 150 of file DebugOutput.hpp.

 {
 if( mpiRank >= N ) verbosityLimit = 0;
 }

References mpiRank, and verbosityLimit.

Referenced by moab::WriteHDF5Parallel::parallel_create_file(), and moab::ReadHDF5::set_up_read().

list_ints_real()

void moab::DebugOutput::list_ints_real ( const char *  pfx, const Range &  range  )

private

Definition at line 309 of file DebugOutput.cpp.

{
 if( range.empty() )
 {
 print_real( "<empty>\n" );
 return;
 }
 
 if( pfx )
 {
 lineBuffer.insert( lineBuffer.end(), pfx, pfx + strlen( pfx ) );
 lineBuffer.push_back( ' ' );
 }
 
 char numbuf[48]; // unsigned 64 bit integer can't have more than 20 decimal digits
 Range::const_pair_iterator i;
 for( i = range.const_pair_begin(); i != range.const_pair_end(); ++i )
 {
 if( i->first == i->second )
 sprintf( numbuf, " %lu,", (unsigned long)( i->first ) );
 else
 print_range( numbuf, (unsigned long)( i->first ), (unsigned long)( i->second ) );
 lineBuffer.insert( lineBuffer.end(), numbuf, numbuf + strlen( numbuf ) );
 }
 
 lineBuffer.push_back( '\n' );
 process_line_buffer();
}

References moab::Range::const_pair_begin(), moab::Range::const_pair_end(), moab::Range::empty(), lineBuffer, moab::print_range(), print_real(), and process_line_buffer().

Referenced by print_ints().

list_range_real()

void moab::DebugOutput::list_range_real ( const char *  pfx, const Range &  range  )

private

Definition at line 273 of file DebugOutput.cpp.

{
 if( pfx )
 {
 lineBuffer.insert( lineBuffer.end(), pfx, pfx + strlen( pfx ) );
 lineBuffer.push_back( ' ' );
 }
 
 if( range.empty() )
 {
 print_real( "<empty>\n" );
 return;
 }
 
 char numbuf[48]; // unsigned 64 bit integer can't have more than 20 decimal digits
 Range::const_pair_iterator i;
 EntityType type = MBMAXTYPE;
 for( i = range.const_pair_begin(); i != range.const_pair_end(); ++i )
 {
 if( TYPE_FROM_HANDLE( i->first ) != type )
 {
 type = TYPE_FROM_HANDLE( i->first );
 const char* name = CN::EntityTypeName( type );
 lineBuffer.insert( lineBuffer.end(), name, name + strlen( name ) );
 }
 if( i->first == i->second )
 sprintf( numbuf, " %lu,", (unsigned long)( ID_FROM_HANDLE( i->first ) ) );
 else
 print_range( numbuf, ID_FROM_HANDLE( i->first ), ID_FROM_HANDLE( i->second ) );
 lineBuffer.insert( lineBuffer.end(), numbuf, numbuf + strlen( numbuf ) );
 }
 
 lineBuffer.push_back( '\n' );
 process_line_buffer();
}

References moab::Range::const_pair_begin(), moab::Range::const_pair_end(), moab::Range::empty(), moab::CN::EntityTypeName(), moab::ID_FROM_HANDLE(), lineBuffer, MBMAXTYPE, moab::print_range(), print_real(), process_line_buffer(), and moab::TYPE_FROM_HANDLE().

Referenced by print().

operator=()

DebugOutput & moab::DebugOutput::operator=

(

const DebugOutput &

copy

)

Definition at line 127 of file DebugOutput.cpp.

{
 linePfx = copy.linePfx;
 outputImpl = copy.outputImpl;
 mpiRank = copy.mpiRank;
 verbosityLimit = copy.verbosityLimit;
 outputImpl->referenceCount++;
 assert( outputImpl->referenceCount > 1 );
 return *this;
}

References linePfx, mpiRank, outputImpl, moab::DebugOutputStream::referenceCount, and verbosityLimit.

print() [1/4]

void moab::DebugOutput::print ( int  verbosity, const char *  pfx, const Range &  range  )

inline

Print the contents of a moab::Range.

Parameters

pfx	String to print after default class prefix and before range contents

Definition at line 215 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) list_range_real( pfx, range );
 }

References check(), and list_range_real().

print() [2/4]

void moab::DebugOutput::print ( int  verbosity, const char *  str  )

inline

Output the specified string iff output is enabled.

Definition at line 178 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) print_real( str );
 }

References check(), and print_real().

Referenced by moab::WriteHDF5Parallel::communicate_shared_set_ids(), moab::WriteHDF5Parallel::create_tag_tables(), moab::ReadHDF5::delete_non_side_elements(), moab::ReadParallel::delete_nonlocal_entities(), moab::WriteHDF5Parallel::gather_interface_meshes(), moab::ReadHDF5::get_partition(), moab::ReadParallel::load_file(), moab::ReadHDF5::load_file_partial(), main(), moab::WriteHDF5Parallel::negotiate_type_list(), moab::WriteHDF5Parallel::parallel_create_file(), moab::ParallelComm::print_debug_waitany(), moab::WriteHDF5Parallel::print_set_sharing_data(), moab::print_type_sets(), moab::ReadHDF5::read_nodes(), moab::ReadHDF5::read_sparse_tag_indices(), moab::ParallelComm::resolve_shared_ents(), moab::ReadHDF5::set_up_read(), moab::ParallelComm::unpack_buffer(), moab::WriteHDF5::write_adjacencies(), moab::WriteHDF5::write_elems(), moab::WriteHDF5::write_nodes(), moab::WriteHDF5::write_qa(), moab::WriteHDF5::write_set_data(), moab::WriteHDF5::write_sets(), moab::WriteHDF5::write_sparse_ids(), moab::WriteHDF5::write_tag_values(), moab::WriteHDF5::write_var_len_data(), and moab::WriteHDF5::write_var_len_indices().

print() [3/4]

void moab::DebugOutput::print ( int  verbosity, const Range &  range  )

inline

Print the contents of a moab::Range.

Definition at line 220 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) list_range_real( 0, range );
 }

References check(), and list_range_real().

print() [4/4]

void moab::DebugOutput::print ( int  verbosity, const std::string &  str  )

inline

Output the specified string iff output is enabled.

Definition at line 184 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) print_real( str );
 }

References check(), and print_real().

print_ints() [1/2]

void moab::DebugOutput::print_ints ( int  verbosity, const char *  pfx, const Range &  range  )

inline

Print the contents of a moab::Range as numerical values only.

Parameters

pfx	String to print after default class prefix and before range contents

Definition at line 227 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) list_ints_real( pfx, range );
 }

References check(), and list_ints_real().

Referenced by moab::ReadHDF5::load_file_partial(), and moab::ReadHDF5::read_set_ids_recursive().

print_ints() [2/2]

void moab::DebugOutput::print_ints ( int  verbosity, const Range &  range  )

inline

Print the contents of a moab::Range as numerical values only.

Definition at line 232 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) list_ints_real( 0, range );
 }

References check(), and list_ints_real().

print_real() [1/3]

void moab::DebugOutput::print_real ( const char *  buffer )

private

Definition at line 162 of file DebugOutput.cpp.

{
 lineBuffer.insert( lineBuffer.end(), buffer, buffer + strlen( buffer ) );
 process_line_buffer();
}

References buffer, lineBuffer, and process_line_buffer().

Referenced by list_ints_real(), list_range_real(), print(), printf(), and tprint_real().

print_real() [2/3]

void moab::DebugOutput::print_real ( const char *  buffer, va_list  args1, va_list  args2  )

private

Definition at line 186 of file DebugOutput.cpp.

{
 size_t idx = lineBuffer.size();
#ifdef MOAB_HAVE_VSNPRINTF
 // try once with remaining space in buffer
 lineBuffer.resize( lineBuffer.capacity() );
 unsigned size = vsnprintf( &lineBuffer[idx], lineBuffer.size() - idx, fmt, args1 );
 ++size; // trailing null
 // if necessary, increase buffer size and retry
 if( size > ( lineBuffer.size() - idx ) )
 {
 lineBuffer.resize( idx + size );
 size = vsnprintf( &lineBuffer[idx], lineBuffer.size() - idx, fmt, args2 );
 ++size; // trailing null
 }
#else
 // Guess how much space might be required.
 // If every character is a format code then there are len/3 format codes.
 // Guess a random large value of num_chars characters per formatted argument.
 const unsigned num_chars = 180;
 unsigned exp_size = ( num_chars / 3 ) * strlen( fmt );
 lineBuffer.resize( idx + exp_size );
 unsigned size = vsprintf( &lineBuffer[idx], fmt, args1 );
 ++size; // trailing null
 // check if we overflowed the buffer
 if( size > exp_size )
 {
 // crap!
 fprintf( stderr, "ERROR: Buffer overflow at %s:%d\n", __FILE__, __LINE__ );
 lineBuffer.resize( idx + exp_size );
 size = vsprintf( &lineBuffer[idx], fmt, args2 );
 ++size; // trailing null
 }
#endif
 
 // less one because we don't want the trailing '\0'
 lineBuffer.resize( idx + size - 1 );
 process_line_buffer();
}

References lineBuffer, process_line_buffer(), and size.

print_real() [3/3]

void moab::DebugOutput::print_real ( const std::string &  str )

private

Definition at line 174 of file DebugOutput.cpp.

{
 lineBuffer.insert( lineBuffer.end(), str.begin(), str.end() );
 process_line_buffer();
}

References lineBuffer, and process_line_buffer().

printf()

void moab::DebugOutput::printf ( int  verbosity, const char *  fmt,   ...  )

inline

Output the specified printf-formatted output iff output is enabled.

Definition at line 282 of file DebugOutput.hpp.

{
 if( check( verbosity ) )
 {
 va_list args1, args2;
 va_start( args1, fmt );
 va_start( args2, fmt );
 print_real( fmt, args1, args2 );
 va_end( args2 );
 va_end( args1 );
 }
}

References check(), and print_real().

Referenced by moab::WriteHDF5::assign_ids(), moab::WriteHDF5Parallel::communicate_shared_set_data(), moab::WriteHDF5Parallel::communicate_shared_set_ids(), moab::WriteHDF5Parallel::create_meshset_tables(), moab::WriteHDF5Parallel::create_tag_tables(), CreateTempestMesh(), moab::ReadHDF5::debug_barrier_line(), moab::WriteHDF5Parallel::debug_barrier_line(), moab::ReadHDF5::delete_non_side_elements(), moab::WriteHDF5Parallel::exchange_file_ids(), moab::ReadHDF5::find_sets_containing(), moab::ReadHDF5::load_file_partial(), main(), moab::WriteHDF5Parallel::negotiate_type_list(), moab::ParallelComm::print_debug_irecv(), moab::ParallelComm::print_debug_waitany(), moab::WriteHDF5Parallel::print_set_sharing_data(), moab::print_type_sets(), moab::ReadHDF5::read_adjacencies(), moab::ReadHDF5VarLen::read_data(), moab::ReadHDF5::read_dense_tag(), moab::ReadHDF5::read_elems(), moab::ReadHDF5::read_node_adj_elems(), moab::ReadHDF5::read_nodes(), moab::ReadHDF5VarLen::read_offsets(), moab::ScdNCHelper::read_scd_variables_to_nonset(), moab::ReadHDF5::read_set_data(), moab::ReadHDF5::read_sparse_tag(), moab::ReadHDF5::read_sparse_tag_indices(), moab::ReadHDF5::read_tag(), moab::ReadHDF5::read_tag_values_partial(), moab::NCHelperGCRM::read_ucd_variables_to_nonset(), moab::NCHelperHOMME::read_ucd_variables_to_nonset(), moab::NCHelperMPAS::read_ucd_variables_to_nonset(), moab::NCHelper::read_variables_to_set(), moab::ParallelComm::resolve_shared_ents(), moab::WriteHDF5::write_elems(), moab::WriteHDF5::write_nodes(), moab::WriteHDF5::write_sets(), and moab::WriteHDF5::write_tag().

process_line_buffer()

void moab::DebugOutput::process_line_buffer ( )

private

Definition at line 338 of file DebugOutput.cpp.

{
 size_t last_idx = 0;
 std::vector< char >::iterator i;
 for( i = std::find( lineBuffer.begin(), lineBuffer.end(), '\n' ); i != lineBuffer.end();
 i = std::find( i, lineBuffer.end(), '\n' ) )
 {
 *i = '\0';
 if( have_rank() )
 outputImpl->println( get_rank(), linePfx.c_str(), &lineBuffer[last_idx] );
 else
 outputImpl->println( linePfx.c_str(), &lineBuffer[last_idx] );
 ++i;
 last_idx = i - lineBuffer.begin();
 }
 
 if( last_idx )
 {
 i = std::copy( lineBuffer.begin() + last_idx, lineBuffer.end(), lineBuffer.begin() );
 lineBuffer.erase( i, lineBuffer.end() );
 }
}

References get_rank(), have_rank(), lineBuffer, linePfx, outputImpl, and moab::DebugOutputStream::println().

Referenced by list_ints_real(), list_range_real(), print_real(), and ~DebugOutput().

set_prefix()

void moab::DebugOutput::set_prefix ( const std::string &  str )

inline

Set line prefix.

Definition at line 172 of file DebugOutput.hpp.

 {
 linePfx = str;
 }

References linePfx.

Referenced by moab::TempestRemapper::ComputeOverlapMesh(), moab::TempestRemapper::convert_tempest_mesh_private(), moab::TempestRemapper::ConvertMeshToTempest(), moab::ReadNC::parse_options(), moab::WriteNC::parse_options(), moab::ReadHDF5::set_up_read(), and ToolContext::ToolContext().

set_rank()

void moab::DebugOutput::set_rank ( int  rank )

inline

Set MPI rank.

Definition at line 141 of file DebugOutput.hpp.

 {
 mpiRank = rank;
 }

References mpiRank.

Referenced by moab::ParallelComm::initialize(), main(), moab::WriteHDF5Parallel::parallel_create_file(), moab::ReadNC::parse_options(), moab::WriteNC::parse_options(), moab::ReadParallel::ReadParallel(), and moab::ReadHDF5::set_up_read().

set_verbosity()

void moab::DebugOutput::set_verbosity ( unsigned  val )

inline

Set verbosity limit.

Definition at line 161 of file DebugOutput.hpp.

 {
 verbosityLimit = val;
 }

References verbosityLimit.

Referenced by moab::ReadParallel::load_file(), main(), moab::ReadNC::parse_options(), moab::WriteNC::parse_options(), moab::ReadParallel::ReadParallel(), moab::ParallelComm::set_debug_verbosity(), moab::ReadHDF5::set_up_read(), and moab::WriteHDF5::write_file().

tprint() [1/3]

void moab::DebugOutput::tprint ( )

private

Definition at line 361 of file DebugOutput.cpp.

{
 size_t s = lineBuffer.size();
 lineBuffer.resize( s + 64 );
 size_t ss = sprintf( &lineBuffer[s], "(%.2f s) ", cpuTi.time_since_birth() );
 lineBuffer.resize( s + ss );
}

References cpuTi, lineBuffer, and moab::CpuTimer::time_since_birth().

Referenced by tprint_real().

tprint() [2/3]

void moab::DebugOutput::tprint ( int  verbosity, const char *  str  )

inline

Output the specified string iff output is enabled.

Include current CPU time (as returned by clock()) in output.

Definition at line 195 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) tprint_real( str );
 }

References check(), and tprint_real().

Referenced by moab::WriteHDF5Parallel::communicate_shared_set_ids(), moab::WriteHDF5Parallel::create_tag_tables(), moab::ReadParallel::delete_nonlocal_entities(), moab::ReadHDF5::get_set_contents(), moab::ReadParallel::load_file(), moab::ReadHDF5::load_file(), moab::ReadHDF5::load_file_impl(), moab::ReadHDF5::load_file_partial(), moab::WriteHDF5Parallel::parallel_create_file(), moab::ReadNC::read_header(), moab::WriteHDF5::serial_create_file(), moab::ReadHDF5::set_up_read(), and moab::WriteHDF5::write_file_impl().

tprint() [3/3]

void moab::DebugOutput::tprint ( int  verbosity, const std::string &  str  )

inline

Output the specified string iff output is enabled.

Include current CPU time (as returned by clock()) in output.

Definition at line 203 of file DebugOutput.hpp.

 {
 if( check( verbosity ) ) tprint_real( str );
 }

References check(), and tprint_real().

tprint_real() [1/3]

void moab::DebugOutput::tprint_real ( const char *  buffer )

private

Definition at line 168 of file DebugOutput.cpp.

{
 tprint();
 print_real( buffer );
}

References buffer, print_real(), and tprint().

Referenced by tprint(), and tprintf().

tprint_real() [2/3]

void moab::DebugOutput::tprint_real ( const char *  buffer, va_list  args1, va_list  args2  )

private

Definition at line 226 of file DebugOutput.cpp.

{
 tprint();
 print_real( fmt, args1, args2 );
}

References print_real(), and tprint().

tprint_real() [3/3]

void moab::DebugOutput::tprint_real ( const std::string &  str )

private

Definition at line 180 of file DebugOutput.cpp.

{
 tprint();
 print_real( str );
}

References print_real(), and tprint().

tprintf()

void moab::DebugOutput::tprintf ( int  verbosity, const char *  fmt,   ...  )

inline

Output the specified printf-formatted output iff output is enabled.

Include current CPU time (as returned by clock()) in output.

Definition at line 295 of file DebugOutput.hpp.

{
 if( check( verbosity ) )
 {
 va_list args1, args2;
 va_start( args1, fmt );
 va_start( args2, fmt );
 tprint_real( fmt, args1, args2 );
 va_end( args2 );
 va_end( args1 );
 }
}

References check(), and tprint_real().

Referenced by moab::NCWriteHelper::collect_variable_data(), moab::WriteHDF5Parallel::communicate_shared_set_data(), moab::NCHelper::create_conventional_tags(), moab::NCHelper::create_dummy_variables(), moab::NCHelperGCRM::create_local_edges(), moab::NCHelperMPAS::create_local_edges(), moab::NCHelperESMF::create_local_vertices(), moab::NCHelperGCRM::create_local_vertices(), moab::NCHelperMPAS::create_local_vertices(), moab::ScdNCHelper::create_mesh(), moab::NCHelperDomain::create_mesh(), moab::NCHelperESMF::create_mesh(), moab::NCHelperGCRM::create_mesh(), moab::NCHelperHOMME::create_mesh(), moab::NCHelperMPAS::create_mesh(), moab::NCHelperScrip::create_mesh(), moab::ParallelComm::exchange_ghost_cells(), moab::ParallelComm::exchange_owned_mesh(), moab::ParallelComm::exchange_tags(), moab::ReadNC::get_attributes(), moab::ReadNC::get_dimensions(), moab::NCHelper::get_tag_to_nonset(), moab::NCHelper::get_tag_to_set(), moab::ReadNC::get_variables(), moab::NCWriteHelper::init_file(), moab::NCHelperDomain::init_mesh_vals(), moab::NCHelperEuler::init_mesh_vals(), moab::NCHelperFV::init_mesh_vals(), moab::ReadParallel::load_file(), moab::ReadHDF5::load_file(), moab::ReadNC::load_file(), moab::ReadHDF5::load_file_partial(), moab::ParallelComm::pack_entities(), moab::ParallelComm::pack_entity_seq(), moab::ParallelComm::pack_sets(), moab::ParallelComm::pack_tag(), moab::ParallelComm::pack_tags(), moab::WriteHDF5Parallel::parallel_create_file(), moab::ParallelComm::print_debug_irecv(), moab::ParallelComm::print_debug_isend(), moab::ParallelComm::print_debug_recd(), moab::ParallelComm::print_debug_waitany(), moab::WriteNC::process_concatenated_attribute(), moab::WriteNC::process_conventional_tags(), moab::ReadHDF5::read_elems(), moab::ReadNC::read_header(), moab::ReadHDF5::read_nodes(), moab::ScdNCHelper::read_scd_variables_to_nonset(), moab::ScdNCHelper::read_scd_variables_to_nonset_allocate(), moab::ReadHDF5::read_set_ids_recursive(), moab::ReadHDF5::read_tag(), moab::NCHelperGCRM::read_ucd_variables_to_nonset(), moab::NCHelperHOMME::read_ucd_variables_to_nonset(), moab::NCHelperMPAS::read_ucd_variables_to_nonset(), moab::NCHelperGCRM::read_ucd_variables_to_nonset_allocate(), moab::NCHelperHOMME::read_ucd_variables_to_nonset_allocate(), moab::NCHelperMPAS::read_ucd_variables_to_nonset_allocate(), moab::NCHelper::read_variables_to_set(), moab::NCHelper::read_variables_to_set_allocate(), moab::ParallelComm::recv_entities(), moab::ParallelComm::reduce_tags(), moab::ParallelComm::resolve_shared_ents(), moab::ParallelComm::send_entities(), moab::ParallelComm::send_recv_entities(), moab::ReadHDF5::set_up_read(), moab::ParallelComm::settle_intersection_points(), moab::ParallelComm::unpack_buffer(), moab::ParallelComm::unpack_entities(), moab::ParallelComm::unpack_sets(), moab::ParallelComm::unpack_tags(), moab::WriteNC::write_file(), and moab::WriteHDF5::write_tag().

use_world_rank()

void moab::DebugOutput::use_world_rank

(

)

Set MPI rank to the rank of this proccess in MPI_COMM_WORLD, or zero if MOAB is build w/out MPI.

Definition at line 153 of file DebugOutput.cpp.

{
 mpiRank = 0;
#ifdef MOAB_HAVE_MPI
 int flag = 0;
 if( MPI_SUCCESS == MPI_Initialized( &flag ) && flag ) MPI_Comm_rank( MPI_COMM_WORLD, &mpiRank );
#endif
}

References mpiRank.

Member Data Documentation

cpuTi

CpuTimer moab::DebugOutput::cpuTi

private

Definition at line 242 of file DebugOutput.hpp.

Referenced by tprint().

lineBuffer

std::vector< char > moab::DebugOutput::lineBuffer

private

Definition at line 261 of file DebugOutput.hpp.

Referenced by list_ints_real(), list_range_real(), print_real(), process_line_buffer(), tprint(), and ~DebugOutput().

linePfx

std::string moab::DebugOutput::linePfx

private

Definition at line 238 of file DebugOutput.hpp.

Referenced by get_prefix(), operator=(), process_line_buffer(), and set_prefix().

mpiRank

int moab::DebugOutput::mpiRank

private

Definition at line 240 of file DebugOutput.hpp.

Referenced by get_rank(), have_rank(), limit_output_to_first_N_procs(), operator=(), set_rank(), and use_world_rank().

outputImpl

DebugOutputStream* moab::DebugOutput::outputImpl

private

Definition at line 239 of file DebugOutput.hpp.

Referenced by DebugOutput(), operator=(), process_line_buffer(), and ~DebugOutput().

verbosityLimit

unsigned moab::DebugOutput::verbosityLimit

private

Definition at line 241 of file DebugOutput.hpp.

Referenced by check(), get_verbosity(), limit_output_to_first_N_procs(), operator=(), and set_verbosity().

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The documentation for this class was generated from the following files:

• DebugOutput.hpp
• DebugOutput.cpp