moab::DataCoupler Class Reference

This class couples data between meshes. More...

#include <DataCoupler.hpp>

Collaboration diagram for moab::DataCoupler:

Public Types
enum	Method { CONSTANT , LINEAR_FE , QUADRATIC_FE , SPECTRAL }
enum	IntegType { VOLUME }

Public Member Functions
	DataCoupler (Interface *impl, Range &source_ents, int coupler_id, ParallelComm *pc=NULL, bool init_locator=true, int dim=-1)
virtual	~DataCoupler ()
ErrorCode	locate_points (double *xyz, int num_points, const double rel_iter_tol=1.0e-10, const double abs_iter_tol=1.0e-10, const double inside_tol=1.0e-6)
ErrorCode	locate_points (Range &ents, const double rel_iter_tol=1.0e-10, const double abs_iter_tol=1.0e-10, const double inside_tol=1.0e-6)
ErrorCode	interpolate (int method, Tag tag, double *interp_vals=NULL, std::vector< int > *point_indices=NULL, bool normalize=true)
ErrorCode	interpolate (int method, const std::string &tag_name, double *interp_vals=NULL, std::vector< int > *point_indices=NULL, bool normalize=true)
ErrorCode	interpolate (int *methods, const std::string *tag_names, int *points_per_method, int num_methods, double *interp_vals=NULL, std::vector< int > *point_indices=NULL, bool normalize=true)
ErrorCode	interpolate (int *methods, Tag *tag_names, int *points_per_method, int num_methods, double *interp_vals=NULL, std::vector< int > *point_indices=NULL, bool normalize=true)
SpatialLocator *	spatial_locator ()
int	my_id () const
const Range &	target_ents () const
Range &	target_ents ()
int	get_dim () const

Private Attributes
Interface *	mbImpl
ParallelComm *	myPcomm
SpatialLocator *	myLocator
int	myId
Range	targetEnts
int	myDim

Detailed Description

This class couples data between meshes.

The coupler interpolates solution data at a set of points. Data being interpolated resides on a "source" mesh, in a tag or in vertex coords. Applications calling this coupler send in entities, and receive back data interpolated at those points. Entities in the source mesh containing those points do not have to reside on the same processor.

To use, an application should:

• instantiate this DataCoupler by calling the constructor collectively on all processors in the communicator
• call locate_points, which locates the points to be interpolated and (optionally) caches the results in this class and SpatialLocator
• call interpolate, which does the interpolation

Multiple interpolations (of multiple tags, or element-average vs. true interpolation) can be done after locating the points.

SpatialLocator is used for the spatial location portion of this work.

This class is a next-generation implementation of Coupler.

Definition at line 39 of file DataCoupler.hpp.

Member Enumeration Documentation

IntegType

enum moab::DataCoupler::IntegType

Enumerator
VOLUME

Definition at line 50 of file DataCoupler.hpp.

 {
 VOLUME
 };

Method

enum moab::DataCoupler::Method

Enumerator
CONSTANT
LINEAR_FE
QUADRATIC_FE
SPECTRAL

Definition at line 42 of file DataCoupler.hpp.

 {
 CONSTANT,
 LINEAR_FE,
 QUADRATIC_FE,
 SPECTRAL
 };

Constructor & Destructor Documentation

DataCoupler()

moab::DataCoupler::DataCoupler	(	Interface *	impl,
		Range &	source_ents,
		int	coupler_id,
		ParallelComm *	pc = NULL,
		bool	init_locator = true,
		int	dim = -1
	)

Definition at line 22 of file DataCoupler.cpp.

 : mbImpl( impl ), myPcomm( pc ), myId( coupler_id ), myDim( dim )
{
 assert( NULL != mbImpl && ( myPcomm || !source_ents.empty() ) );
 
 // Now initialize the tree
 if( init_locator )
 {
 myLocator = new SpatialLocator( mbImpl, source_ents );
 myLocator->elem_eval( new ElemEvaluator( mbImpl ) );
 
 // Initialize element evaluator with the default for the entity types in source_ents;
 // can be replaced later by application if desired
 if( !source_ents.empty() )
 {
 Range::pair_iterator pit = source_ents.pair_begin();
 EntityType last_type = MBMAXTYPE;
 for( ; pit != source_ents.pair_end(); ++pit )
 {
 EntityType this_type = mbImpl->type_from_handle( pit->first );
 if( last_type == this_type ) continue;
 ErrorCode rval = myLocator->elem_eval()->set_eval_set( pit->first );
 if( MB_SUCCESS != rval ) throw( rval );
 last_type = this_type;
 }
 }
 }
 
 if( -1 == dim && !source_ents.empty() ) myDim = mbImpl->dimension_from_handle( *source_ents.rbegin() );
}

References dim, moab::Interface::dimension_from_handle(), moab::SpatialLocator::elem_eval(), moab::Range::empty(), ErrorCode, MB_SUCCESS, mbImpl, MBMAXTYPE, myDim, myLocator, myPcomm, moab::Range::pair_begin(), moab::Range::pair_end(), moab::Range::rbegin(), moab::ElemEvaluator::set_eval_set(), and moab::Interface::type_from_handle().

~DataCoupler()

moab::DataCoupler::~DataCoupler ( )

virtual

Definition at line 60 of file DataCoupler.cpp.

{
 delete myLocator->elem_eval();
 delete myLocator;
}

References moab::SpatialLocator::elem_eval(), and myLocator.

Member Function Documentation

get_dim()

int moab::DataCoupler::get_dim ( ) const

inline

Definition at line 236 of file DataCoupler.hpp.

 {
 return myDim;
 }

References myDim.

interpolate() [1/4]

ErrorCode moab::DataCoupler::interpolate	(	int *	methods,
		const std::string *	tag_names,
		int *	points_per_method,
		int	num_methods,
		double *	interp_vals = NULL,
		std::vector< int > *	point_indices = NULL,
		bool	normalize = true
	)

interpolate() [2/4]

ErrorCode moab::DataCoupler::interpolate	(	int *	methods,
		Tag *	tag_names,
		int *	points_per_method,
		int	num_methods,
		double *	interp_vals = NULL,
		std::vector< int > *	point_indices = NULL,
		bool	normalize = true
	)

Method‍/ int method = methods[TLob.vi_rd[4*i + 3]];

Definition at line 109 of file DataCoupler.cpp.

{
 // Lowest-level interpolate function, does actual interpolation using calls to ElemEvaluator
 
 ErrorCode result = MB_SUCCESS;
 
 unsigned int pts_total = 0;
 for( int i = 0; i < num_methods; i++ )
 pts_total += ( points_per_method ? points_per_method[i] : targetEnts.size() );
 
 unsigned int num_indices = ( point_indices ? point_indices->size() : targetEnts.size() );
 // # points and indices should be identical
 if( pts_total != num_indices ) return MB_FAILURE;
 
 // Since each tuple contains one interpolated tag, if we're interpolating multiple tags, every
 // tuple needs to be able to store up to max tag size
 int max_tsize = -1;
 for( int i = 0; i < num_methods; i++ )
 {
 int tmp_tsize;
 result = mbImpl->tag_get_length( tags[i], tmp_tsize );
 if( MB_SUCCESS != result ) return MB_FAILURE;
 max_tsize = std::max( max_tsize, tmp_tsize );
 }
 
 if( myPcomm && myPcomm->size() > 1 )
 {
 // Build up the tuple list to distribute from my target points; assume that
 // all procs use same method/tag input
 TupleList TLob; // TLob structure: (pto_i, ridx_i, lidx_i, meth_tagidx_i)
 TLob.initialize( 4, 0, 0, 0, num_indices );
 int tn = 0; // The tuple number we're currently on
 TLob.enableWriteAccess();
 for( int m = 0; m < num_methods; m++ )
 {
 int num_points = ( points_per_method ? points_per_method[m] : targetEnts.size() );
 for( int j = 0; j < num_points; j++ )
 {
 int idx = ( point_indices ? ( *point_indices )[j]
 : j ); // The index in my targetEnts for this interpolation point
 
 // Remote proc/idx from myLocator->parLocTable
 TLob.vi_wr[4 * tn] = myLocator->par_loc_table().vi_rd[2 * idx]; // proc
 TLob.vi_wr[4 * tn + 1] = myLocator->par_loc_table().vi_rd[2 * idx + 1]; // Remote idx
 
 // Local entity index, tag/method index from my data
 TLob.vi_wr[4 * tn + 2] = idx;
 TLob.vi_wr[4 * tn + 3] = m;
 TLob.inc_n();
 tn++;
 }
 }
 
 // Scatter/gather interpolation points
 myPcomm->proc_config().crystal_router()->gs_transfer( 1, TLob, 0 );
 
 // Perform interpolation on local source mesh; put results into TLinterp
 TupleList TLinterp; // TLinterp structure: (pto_i, ridx_i, vals[max_tsize]_d)
 TLinterp.initialize( 2, 0, 0, max_tsize, TLob.get_n() );
 TLinterp.set_n( TLob.get_n() ); // Set the size right away
 TLinterp.enableWriteAccess();
 
 for( unsigned int i = 0; i < TLob.get_n(); i++ )
 {
 int lidx = TLob.vi_rd[4 * i + 1]; // Index into myLocator's local table
 // Method and tag indexed with same index
 ///*Method*/ int method = methods[TLob.vi_rd[4*i + 3]];
 Tag tag = tags[TLob.vi_rd[4 * i + 3]];
 // Copy proc/remote index from TLob
 TLinterp.vi_wr[2 * i] = TLob.vi_rd[4 * i];
 TLinterp.vi_wr[2 * i + 1] = TLob.vi_rd[4 * i + 2];
 
 // Set up the evaluator for the tag and entity, then interpolate, putting result in
 // TLinterp
 myLocator->elem_eval()->set_tag_handle( tag );
 myLocator->elem_eval()->set_ent_handle( myLocator->loc_table().vul_rd[lidx] );
 result =
 myLocator->elem_eval()->eval( myLocator->loc_table().vr_rd + 3 * lidx, TLinterp.vr_rd + i * max_tsize );
 if( MB_SUCCESS != result ) return result;
 }
 
 // Scatter/gather interpolation data
 myPcomm->proc_config().crystal_router()->gs_transfer( 1, TLinterp, 0 );
 
 // Copy the interpolated field as a unit
 std::copy( TLinterp.vr_rd, TLinterp.vr_rd + TLinterp.get_n() * max_tsize, interp_vals );
 }
 else
 {
 // If called serially, interpolate directly from local locations/entities,
 // into either interp_vals or by setting data directly on tags on those entities
 std::vector< double > tmp_vals;
 std::vector< EntityHandle > tmp_ents;
 double* tmp_dbl = interp_vals;
 for( int i = 0; i < num_methods; i++ )
 {
 int num_points = ( points_per_method ? points_per_method[i] : targetEnts.size() );
 
 // Interpolated data is tsize long, which is either max size (if data passed back to
 // caller in interp_vals) or tag size (if data will be set on entities, in which case it
 // shouldn't have padding) set sizes here, inside loop over methods, to reduce memory
 // usage
 int tsize = max_tsize, tsize_bytes = 0;
 if( !interp_vals )
 {
 tmp_vals.resize( num_points * max_tsize );
 tmp_dbl = &tmp_vals[0];
 tmp_ents.resize( num_points );
 result = mbImpl->tag_get_length( tags[i], tsize );
 if( MB_SUCCESS != result ) return result;
 result = mbImpl->tag_get_bytes( tags[i], tsize_bytes );
 if( MB_SUCCESS != result ) return result;
 }
 
 for( int j = 0; j < num_points; j++ )
 {
 int lidx;
 if( point_indices )
 lidx = ( *point_indices )[j];
 else
 lidx = j;
 
 myLocator->elem_eval()->set_tag_handle( tags[i] );
 myLocator->elem_eval()->set_ent_handle( myLocator->loc_table().vul_rd[lidx] );
 if( !interp_vals ) tmp_ents[j] = targetEnts[lidx]; // Could be performance-sensitive, thus the if test
 result = myLocator->elem_eval()->eval( myLocator->loc_table().vr_rd + 3 * lidx, tmp_dbl );
 tmp_dbl += tsize;
 if( MB_SUCCESS != result ) return result;
 } // for j over points
 
 if( !interp_vals )
 {
 // Set tags on tmp_ents; data is already w/o padding, due to tsize setting above
 result = mbImpl->tag_set_data( tags[i], &tmp_ents[0], tmp_ents.size(), &tmp_vals[0] );
 if( MB_SUCCESS != result ) return result;
 }
 
 } // for i over methods
 } // if myPcomm
 
 // Done
 return MB_SUCCESS;
}

References moab::ProcConfig::crystal_router(), moab::SpatialLocator::elem_eval(), moab::TupleList::enableWriteAccess(), ErrorCode, moab::ElemEvaluator::eval(), moab::TupleList::get_n(), moab::TupleList::inc_n(), moab::TupleList::initialize(), moab::SpatialLocator::loc_table(), MB_SUCCESS, mbImpl, myLocator, myPcomm, moab::SpatialLocator::par_loc_table(), moab::ParallelComm::proc_config(), moab::ElemEvaluator::set_ent_handle(), moab::TupleList::set_n(), moab::ElemEvaluator::set_tag_handle(), moab::Range::size(), moab::ParallelComm::size(), moab::Interface::tag_get_bytes(), moab::Interface::tag_get_length(), moab::Interface::tag_set_data(), targetEnts, moab::TupleList::vi_rd, moab::TupleList::vi_wr, moab::TupleList::vr_rd, and moab::TupleList::vul_rd.

interpolate() [3/4]

ErrorCode moab::DataCoupler::interpolate	(	int	method,
		const std::string &	tag_name,
		double *	interp_vals = NULL,
		std::vector< int > *	point_indices = NULL,
		bool	normalize = true
	)

Definition at line 95 of file DataCoupler.cpp.

{
 // Tag name input, translate to tag handle and pass down the chain
 
 Tag tag;
 ErrorCode result = mbImpl->tag_get_handle( interp_tag.c_str(), tag );MB_CHK_SET_ERR( result, "Failed to get handle for interpolation tag \"" << interp_tag << "\"" );
 
 return interpolate( method, tag, interp_vals, point_indices, normalize );
}

References ErrorCode, interpolate(), MB_CHK_SET_ERR, mbImpl, normalize(), and moab::Interface::tag_get_handle().

interpolate() [4/4]

ErrorCode moab::DataCoupler::interpolate ( int  method, Tag  tag, double *  interp_vals = NULL, std::vector< int > *  point_indices = NULL, bool  normalize = true  )

inline

Definition at line 266 of file DataCoupler.hpp.

{
 // No point indices input,
 int num_pts = ( point_indices ? point_indices->size() : targetEnts.size() );
 return interpolate( &method, &tag, &num_pts, 1, interp_vals, point_indices, normalize );
}

References normalize(), moab::Range::size(), and targetEnts.

Referenced by DeformMeshRemap::execute(), and interpolate().

locate_points() [1/2]

ErrorCode moab::DataCoupler::locate_points	(	double *	xyz,
		int	num_points,
		const double	rel_iter_tol = 1.0e-10,
		const double	abs_iter_tol = 1.0e-10,
		const double	inside_tol = 1.0e-6
	)

Definition at line 81 of file DataCoupler.cpp.

{
#ifdef MOAB_HAVE_MPI
 if( myPcomm && myPcomm->size() > 1 )
 return myLocator->par_locate_points( myPcomm, xyz, num_points, rel_iter_tol, abs_iter_tol, inside_tol );
#endif
 
 return myLocator->locate_points( xyz, num_points, rel_iter_tol, abs_iter_tol, inside_tol );
}

References moab::SpatialLocator::locate_points(), myLocator, myPcomm, and moab::ParallelComm::size().

Referenced by DeformMeshRemap::execute().

locate_points() [2/2]

ErrorCode moab::DataCoupler::locate_points	(	Range &	ents,
		const double	rel_iter_tol = 1.0e-10,
		const double	abs_iter_tol = 1.0e-10,
		const double	inside_tol = 1.0e-6
	)

Definition at line 66 of file DataCoupler.cpp.

{
 targetEnts = targ_ents;
 
#ifdef MOAB_HAVE_MPI
 if( myPcomm && myPcomm->size() > 1 )
 return myLocator->par_locate_points( myPcomm, targ_ents, rel_iter_tol, abs_iter_tol, inside_tol );
#endif
 
 return myLocator->locate_points( targ_ents, rel_iter_tol, abs_iter_tol, inside_tol );
}

References moab::SpatialLocator::locate_points(), myLocator, myPcomm, moab::ParallelComm::size(), and targetEnts.

my_id()

int moab::DataCoupler::my_id ( ) const

inline

Definition at line 224 of file DataCoupler.hpp.

 {
 return myId;
 }

References myId.

spatial_locator()

SpatialLocator* moab::DataCoupler::spatial_locator ( )

inline

Definition at line 220 of file DataCoupler.hpp.

 {
 return myLocator;
 }

References myLocator.

Referenced by DeformMeshRemap::execute().

target_ents() [1/2]

Range& moab::DataCoupler::target_ents ( )

inline

Definition at line 232 of file DataCoupler.hpp.

 {
 return targetEnts;
 }

References targetEnts.

target_ents() [2/2]

const Range& moab::DataCoupler::target_ents ( ) const

inline

Definition at line 228 of file DataCoupler.hpp.

 {
 return targetEnts;
 }

References targetEnts.

Member Data Documentation

mbImpl

Interface* moab::DataCoupler::mbImpl

private

Definition at line 244 of file DataCoupler.hpp.

Referenced by DataCoupler(), and interpolate().

myDim

int moab::DataCoupler::myDim

private

Definition at line 263 of file DataCoupler.hpp.

Referenced by DataCoupler(), and get_dim().

myId

int moab::DataCoupler::myId

private

Definition at line 256 of file DataCoupler.hpp.

Referenced by my_id().

myLocator

SpatialLocator* moab::DataCoupler::myLocator

private

Definition at line 252 of file DataCoupler.hpp.

Referenced by DataCoupler(), interpolate(), locate_points(), spatial_locator(), and ~DataCoupler().

myPcomm

ParallelComm* moab::DataCoupler::myPcomm

private

Definition at line 248 of file DataCoupler.hpp.

Referenced by DataCoupler(), interpolate(), and locate_points().

targetEnts

Range moab::DataCoupler::targetEnts

private

Definition at line 260 of file DataCoupler.hpp.

Referenced by interpolate(), locate_points(), and target_ents().

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The documentation for this class was generated from the following files:

• DataCoupler.hpp
• DataCoupler.cpp