mbparallelcomm_test.cpp File Reference

#include "moab/ParallelComm.hpp"
#include "MBParallelConventions.h"
#include "MBTagConventions.hpp"
#include "moab/Core.hpp"
#include "ScdVertexData.hpp"
#include "StructuredElementSeq.hpp"
#include "SequenceManager.hpp"
#include "moab/Error.hpp"
#include "moab_mpi.h"
#include <iostream>
#include <sstream>
#include <cassert>

Include dependency graph for mbparallelcomm_test.cpp:

Go to the source code of this file.

Macros
#define	REALTFI   1
#define	ERROR(a, b)
#define	PRINT_LAST_ERROR
#define	RRA(a)
#define	PRINTSETS(a, b, c, p)

Functions
ErrorCode	create_linear_mesh (Interface *mbImpl, int N, int M, int &nshared)
ErrorCode	create_scd_mesh (Interface *mbImpl, int IJK, int &nshared)
ErrorCode	read_file (Interface *mbImpl, std::vector< std::string > &filenames, const char *tag_name, int tag_val, int distrib, int parallel_option, int resolve_shared, int with_ghosts, int use_mpio, bool print_parallel)
ErrorCode	test_packing (Interface *mbImpl, const char *filename)
ErrorCode	report_nsets (Interface *mbImpl)
ErrorCode	report_iface_ents (Interface *mbImpl, std::vector< ParallelComm * > &pcs)
void	print_usage (const char *)
int	main (int argc, char **argv)

Variables
const bool	debug = false

Macro Definition Documentation

ERROR

#define ERROR	(		a,
			b
	)

Value:

 { \
 std::cerr << ( a ) << std::endl; \
 return b; \
 }

Definition at line 28 of file mbparallelcomm_test.cpp.

PRINT_LAST_ERROR

#define PRINT_LAST_ERROR

Value:

 { \
 std::string last_error; \
 result = mbImpl->get_last_error( last_error ); \
 if( last_error.empty() ) \
 std::cerr << "(none)" << std::endl; \
 else \
 std::cerr << last_error << std::endl; \
 }

Definition at line 34 of file mbparallelcomm_test.cpp.

PRINTSETS

#define PRINTSETS	(		a,
			b,
			c,
			p
	)

Value:

 if( a ) \
 { \
 result = mbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &( a ), p, 1, b ); \
 if( !( b ).empty() ) \
 { \
 std::vector< int > ids( ( b ).size() ); \
 result = mbImpl->tag_get_data( gidtag, b, &ids[0] ); \
 if( MB_SUCCESS == result ) \
 { \
 std::cout << "Proc " << rank << ": " << ( c ) << " (total " << ( b ).size() << "): " << ids[0]; \
 for( unsigned int i = 1; i < ( b ).size(); i++ ) \
 std::cout << ", " << ids[i]; \
 std::cout << std::endl; \
 } \
 } \
 }

REALTFI

#define REALTFI   1

test of ParallelComm functionality

To run:

mpirun -np <#procs> mbparallelcomm_test

Definition at line 22 of file mbparallelcomm_test.cpp.

RRA

#define RRA

(

a

)

Value:

 if( MB_SUCCESS != result ) \
 { \
 std::cerr << ( a ); \
 return result; \
 }

Definition at line 43 of file mbparallelcomm_test.cpp.

Function Documentation

create_linear_mesh()

ErrorCode create_linear_mesh	(	Interface *	mbImpl,
		int	N,
		int	M,
		int &	nshared
	)

create_scd_mesh()

ErrorCode create_scd_mesh	(	Interface *	mbImpl,
		int	IJK,
		int &	nshared
	)

main()

int main	(	int	argc,
		char **	argv
	)

Definition at line 73 of file mbparallelcomm_test.cpp.

{
 // need to init MPI first, to tell how many procs and rank
 MPI_Init( &argc, &argv );
 
 int nprocs, rank;
 MPI_Comm_size( MPI_COMM_WORLD, &nprocs );
 MPI_Comm_rank( MPI_COMM_WORLD, &rank );
 
 // start time
 double stime = 0, rtime = 0, dtime = 0, ltime = 0;
 if( 0 == rank ) stime = MPI_Wtime();
 
 // create MOAB instance based on that
 Interface* mbImpl = new Core;
 if( NULL == mbImpl ) return 1;
 
 ErrorCode result = MB_SUCCESS;
 
 // each interior proc has a vector of N+M vertices, sharing
 // M vertices each with lower- and upper-rank processors, except
 // procs on the end
 
 // get N, M from command line
 if( argc < 3 )
 {
 if( 0 == rank ) print_usage( argv[0] );
 MPI_Finalize();
 return 1;
 }
 
 int npos = 1, tag_val, distrib, with_ghosts = 1, resolve_shared = 1, use_mpio = 0;
 bool print_parallel = false;
 const char* tag_name;
 std::vector< std::string > filenames;
 int parallel_option = 0;
 int num_files;
 
 if( !strcmp( argv[npos], "-p" ) ) print_parallel = true;
 
 while( npos != argc )
 {
 ErrorCode tmp_result;
 int this_opt = strtol( argv[npos++], NULL, 0 );
 switch( this_opt )
 {
 case 0:
 case -1:
 case -2:
 case -3:
 parallel_option = this_opt;
 continue;
 
 case 3:
 // read a file in parallel from the filename on the command line
 tag_name = "MATERIAL_SET";
 tag_val = -1;
 num_files = strtol( argv[npos++], NULL, 0 );
 if( 0 == num_files )
 {
 if( 0 == rank ) print_usage( argv[0] );
 MPI_Finalize();
 return 1;
 }
 while( num_files-- && npos < argc )
 filenames.push_back( std::string( argv[npos++] ) );
 if( npos < argc ) tag_name = argv[npos++];
 if( npos < argc ) tag_val = strtol( argv[npos++], NULL, 0 );
 if( npos < argc )
 distrib = strtol( argv[npos++], NULL, 0 );
 else
 distrib = 1;
 if( npos < argc ) resolve_shared = strtol( argv[npos++], NULL, 0 );
 if( npos < argc ) with_ghosts = strtol( argv[npos++], NULL, 0 );
 if( npos < argc ) use_mpio = strtol( argv[npos++], NULL, 0 );
 
 tmp_result = read_file( mbImpl, filenames, tag_name, tag_val, distrib, parallel_option, resolve_shared,
 with_ghosts, use_mpio, print_parallel );
 if( MB_SUCCESS != tmp_result )
 {
 result = tmp_result;
 std::cerr << "Couldn't read mesh; error message:" << std::endl;
 PRINT_LAST_ERROR;
 MPI_Abort( MPI_COMM_WORLD, result );
 }
 break;
 
 case 4:
 filenames.push_back( argv[npos++] );
 tmp_result = test_packing( mbImpl, filenames[0].c_str() );
 if( MB_SUCCESS != tmp_result )
 {
 result = tmp_result;
 std::cerr << "Packing test failed; error message:" << std::endl;
 PRINT_LAST_ERROR
 }
 break;
 
 case 5:
 // read a file in parallel from the filename on the command line
 tag_name = "MATERIAL_SET";
 distrib = 1;
 tag_val = -1;
 with_ghosts = 0;
 resolve_shared = 1;
 while( npos < argc )
 filenames.push_back( std::string( argv[npos++] ) );
 tmp_result = read_file( mbImpl, filenames, tag_name, tag_val, distrib, parallel_option, resolve_shared,
 with_ghosts, use_mpio, print_parallel );
 if( MB_SUCCESS != tmp_result )
 {
 result = tmp_result;
 std::cerr << "Couldn't read mesh; error message:" << std::endl;
 PRINT_LAST_ERROR;
 MPI_Abort( MPI_COMM_WORLD, result );
 }
 break;
 
 default:
 std::cerr << "Unrecognized option \"" << this_opt << "\"; skipping." << std::endl;
 tmp_result = MB_FAILURE;
 }
 
 if( 0 == rank ) rtime = MPI_Wtime();
 }
 
 if( 0 == rank ) dtime = MPI_Wtime();
 
 result = mbImpl->delete_mesh();
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't delete mesh on rank " << rank << "; error message: " << std::endl;
 PRINT_LAST_ERROR;
 }
 if( 0 == rank ) ltime = MPI_Wtime();
 
 if( MB_SUCCESS == result ) std::cerr << "Proc " << rank << ": Success." << std::endl;
 
 if( 0 == rank )
 std::cout << "Times: " << dtime - stime << " " << rtime - stime << " " << ltime - dtime
 << " (total/read/delete)" << std::endl;
 
 MPI_Finalize();
 
 delete mbImpl;
 
 return ( MB_SUCCESS == result ? 0 : 1 );
}

References moab::Interface::delete_mesh(), ErrorCode, MB_SUCCESS, MPI_COMM_WORLD, PRINT_LAST_ERROR, print_usage(), rank, read_file(), and test_packing().

print_usage()

void print_usage

(

const char *

command

)

Definition at line 222 of file mbparallelcomm_test.cpp.

{
 std::cerr << "Usage: " << command << " [readpar_option] <opt> <input> [...] where:" << std::endl
 << " readpar_option = 0 (BCAST_DELETE) (default), -1 (READ_DELETE), " << std::endl
 << " -2 (READ_PARALLEL), -3 (BCAST)" << std::endl
 << "opt input" << std::endl
 << "=== =====" << std::endl
 << " 1 <linear_ints> <shared_verts> " << std::endl
 << " 2 <n_ints> " << std::endl
 << " 3* <# files> <file_names...> [<tag_name>=\"MATERIAL_SET\" [tag_val] "
 "[distribute=1] [resolve_shared=1] [with_ghosts=1] [use_mpio=0]"
 << std::endl
 << " 4 <file_name> " << std::endl
 << "*Note: if opt 3 is used, it must be the last one." << std::endl;
}

Referenced by main().

read_file()

ErrorCode read_file	(	Interface *	mbImpl,
		std::vector< std::string > &	filenames,
		const char *	tag_name,
		int	tag_val,
		int	distrib,
		int	parallel_option,
		int	resolve_shared,
		int	with_ghosts,
		int	use_mpio,
		bool	print_parallel
	)

Definition at line 331 of file mbparallelcomm_test.cpp.

{
 std::ostringstream options;
 switch( parallel_option )
 {
 case 0:
 options << "PARALLEL=BCAST_DELETE;PARTITION=" << tag_name;
 break;
 case -1:
 options << "PARALLEL=READ_DELETE;PARTITION=" << tag_name;
 break;
 case -2:
 options << "PARALLEL=READ_PART;PARTITION=" << tag_name;
 break;
 case -3:
 options << "PARALLEL=BCAST;PARTITION=" << tag_name;
 break;
 default:
 return MB_FAILURE;
 }
 
 if( -1 != tag_val ) options << ";PARTITION_VAL=" << tag_val;
 
 if( 1 == distrib ) options << ";PARTITION_DISTRIBUTE";
 
 if( 1 == resolve_shared ) options << ";PARALLEL_RESOLVE_SHARED_ENTS";
 
 if( 1 == with_ghosts ) options << ";PARALLEL_GHOSTS=3.0.1";
 
 if( 1 == use_mpio ) options << ";USE_MPIO";
 
 options << ";CPUTIME";
 
 if( print_parallel ) options << ";PRINT_PARALLEL";
 
 std::vector< ParallelComm* > pcs( filenames.size() );
 ErrorCode result = MB_FAILURE;
 
 if( 1 < filenames.size() )
 {
 for( unsigned int i = 0; i < filenames.size(); i++ )
 {
 pcs[i] = new ParallelComm( mbImpl, MPI_COMM_WORLD );
 int index = pcs[i]->get_id();
 std::ostringstream newopts;
 newopts << options.str();
 newopts << ";PARALLEL_COMM=" << index;
 result = mbImpl->load_file( filenames[i].c_str(), 0, newopts.str().c_str() );
 
 if( MB_SUCCESS != result ) PRINT_LAST_ERROR;
 
 if( MB_SUCCESS != result )
 {
 MPI_Abort( MPI_COMM_WORLD, result );
 break;
 }
 
 // exchange tag
 Range tmp_range;
 result = pcs[i]->exchange_tags( "GLOBAL_ID", tmp_range );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Tag exchange didn't work." << std::endl;
 break;
 }
 }
 }
 else
 {
 result = mbImpl->load_file( filenames[0].c_str(), 0, options.str().c_str() );
 RRA( "Failed to load file." );
 pcs[0] = ParallelComm::get_pcomm( mbImpl, 0 );
 assert( pcs[0] );
 }
 
 if( MB_SUCCESS == result ) report_iface_ents( mbImpl, pcs );
 
 return result;
}

References ErrorCode, moab::ParallelComm::get_pcomm(), moab::Interface::load_file(), MB_SUCCESS, MPI_COMM_WORLD, PRINT_LAST_ERROR, report_iface_ents(), and RRA.

Referenced by main().

report_iface_ents()

ErrorCode report_iface_ents	(	Interface *	mbImpl,
		std::vector< ParallelComm * > &	pcs
	)

Definition at line 461 of file mbparallelcomm_test.cpp.

{
 Range iface_ents[6];
 ErrorCode result = MB_SUCCESS, tmp_result;
 
 // now figure out which vertices are shared
 Range part_ents, part_verts;
 for( unsigned int p = 0; p < pcs.size(); p++ )
 {
 // get entities owned by this partition
 for( Range::iterator rit = pcs[p]->partition_sets().begin(); rit != pcs[p]->partition_sets().end(); ++rit )
 {
 tmp_result = mbImpl->get_entities_by_dimension( *rit, 3, part_ents, true );
 if( MB_SUCCESS != tmp_result ) result = tmp_result;
 }
 
 for( int i = 0; i < 4; i++ )
 {
 tmp_result = pcs[p]->get_iface_entities( -1, i, iface_ents[i] );
 
 if( MB_SUCCESS != tmp_result )
 {
 std::cerr << "get_iface_entities returned error on proc " << pcs[p]->proc_config().proc_rank()
 << "; message: " << std::endl;
 std::string last_error;
 result = mbImpl->get_last_error( last_error );
 if( last_error.empty() )
 std::cerr << "(none)" << std::endl;
 else
 std::cerr << last_error << std::endl;
 result = tmp_result;
 }
 if( 0 != i ) iface_ents[4].merge( iface_ents[i] );
 }
 }
 
 // get non-owned vertices
 result = pcs[0]->get_pstatus_entities( 0, PSTATUS_NOT_OWNED, part_verts );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't get non-owned entities." << std::endl;
 return result;
 }
 int tot_verts;
 result = mbImpl->get_number_entities_by_dimension( 0, 0, tot_verts );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't get number of vertices." << std::endl;
 return result;
 }
 tot_verts -= part_verts.size();
 
 // report # iface entities
 result = mbImpl->get_adjacencies( iface_ents[4], 0, false, iface_ents[5], Interface::UNION );
 
 int rank;
 MPI_Comm_rank( MPI_COMM_WORLD, &rank );
 
 std::cerr << "Proc " << rank << " iface entities: " << std::endl;
 for( int i = 0; i < 4; i++ )
 std::cerr << " " << iface_ents[i].size() << " " << i << "d iface entities." << std::endl;
 std::cerr << " (" << iface_ents[5].size() << " verts adj to other iface ents)" << std::endl;
 if( iface_ents[0].size() != iface_ents[5].size() )
 std::cerr << "WARNING: number of interface vertices don't agree with "
 << "vertex adjacencies on interface entities." << std::endl;
 
 // report # regions owned by this proc
 std::cout << "Proc " << rank << " owns " << part_ents.size() << " 3d entities." << std::endl;
 
 // get total # regions over all procs
 int num_local[2], num_total[2];
 num_local[0] = tot_verts;
 num_local[1] = part_ents.size();
 
 int failure = MPI_Reduce( num_local, num_total, 2, MPI_INT, MPI_SUM, 0, MPI_COMM_WORLD );
 if( failure ) result = MB_FAILURE;
 
 if( 0 == rank )
 {
 std::cout << "Total # owned vertices = " << num_total[0] << std::endl;
 std::cout << "Total # owned regions = " << num_total[1] << std::endl;
 }
 
 return result;
}

References ErrorCode, moab::Interface::get_adjacencies(), moab::Interface::get_entities_by_dimension(), moab::Interface::get_last_error(), moab::Interface::get_number_entities_by_dimension(), MB_SUCCESS, moab::Range::merge(), MPI_COMM_WORLD, PSTATUS_NOT_OWNED, rank, size, moab::Range::size(), and moab::Interface::UNION.

Referenced by read_file().

report_nsets()

ErrorCode report_nsets

(

Interface *

mbImpl

)

Definition at line 238 of file mbparallelcomm_test.cpp.

{
 // get and report various numbers...
 int rank;
 MPI_Comm_rank( MPI_COMM_WORLD, &rank );
 
 Range matsets, geomsets, parsets;
 int nsets;
 Tag mtag = 0, gtag = 0, ptag = 0, gidtag;
 ErrorCode result = mbImpl->tag_get_handle( "MATERIAL_SET", 1, MB_TYPE_INTEGER, mtag );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't get MATERIAL_SET tag." << std::endl;
 return result;
 }
 result = mbImpl->tag_get_handle( "GEOM_DIMENSION", 1, MB_TYPE_INTEGER, gtag );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't get MATERIAL_SET tag." << std::endl;
 return result;
 }
 result = mbImpl->tag_get_handle( "PARALLEL_PARTITION", 1, MB_TYPE_INTEGER, ptag );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't PARALLEL_PARTITION tag." << std::endl;
 return result;
 }
 result = mbImpl->tag_get_handle( "GLOBAL_ID", 1, MB_TYPE_INTEGER, gidtag );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't get GLOBAL_ID tag." << std::endl;
 return result;
 }
 result = mbImpl->get_number_entities_by_type( 0, MBENTITYSET, nsets );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Couldn't get number entities by type." << std::endl;
 return result;
 }
 std::cout << "Proc " << rank << ": Total of " << nsets << " entity sets." << std::endl;
 
#define PRINTSETS( a, b, c, p ) \
 if( a ) \
 { \
 result = mbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &( a ), p, 1, b ); \
 if( !( b ).empty() ) \
 { \
 std::vector< int > ids( ( b ).size() ); \
 result = mbImpl->tag_get_data( gidtag, b, &ids[0] ); \
 if( MB_SUCCESS == result ) \
 { \
 std::cout << "Proc " << rank << ": " << ( c ) << " (total " << ( b ).size() << "): " << ids[0]; \
 for( unsigned int i = 1; i < ( b ).size(); i++ ) \
 std::cout << ", " << ids[i]; \
 std::cout << std::endl; \
 } \
 } \
 }
 
 PRINTSETS( mtag, matsets, "material sets", NULL );
 
 int tval = 3;
 void* pval = &tval;
 
 PRINTSETS( gtag, geomsets, "geom sets (vols)", &pval );
 tval = 2;
 geomsets.clear();
 PRINTSETS( gtag, geomsets, "geom sets (surfs)", &pval );
 tval = 1;
 geomsets.clear();
 PRINTSETS( gtag, geomsets, "geom sets (curves)", &pval );
 tval = 0;
 geomsets.clear();
 PRINTSETS( gtag, geomsets, "geom sets (verts)", &pval );
 
 PRINTSETS( ptag, parsets, "partition sets", NULL );
 
 if( debug )
 {
 // list info on all ent sets, reuse parsets
 parsets.clear();
 result = mbImpl->get_entities_by_type( 0, MBENTITYSET, parsets );
 if( MB_SUCCESS == result )
 {
 std::cout << "Total sets (by range): " << parsets.size() << "; sets: " << std::endl;
 parsets.print( " " );
 mbImpl->list_entities( parsets );
 }
 }
 
 return MB_SUCCESS;
}

References moab::Range::clear(), moab::debug, ErrorCode, moab::Interface::get_entities_by_type(), moab::Interface::get_number_entities_by_type(), moab::Interface::list_entities(), MB_SUCCESS, MB_TYPE_INTEGER, MBENTITYSET, MPI_COMM_WORLD, moab::Range::print(), PRINTSETS, rank, moab::Range::size(), and moab::Interface::tag_get_handle().

test_packing()

ErrorCode test_packing	(	Interface *	mbImpl,
		const char *	filename
	)

Definition at line 420 of file mbparallelcomm_test.cpp.

{
 // read the mesh
 EntityHandle file_set;
 ErrorCode result = mbImpl->create_meshset( MESHSET_SET, file_set );
 RRA( "create_meshset failed." );
 
 result = mbImpl->load_file( filename, &file_set, NULL );
 if( MB_SUCCESS != result )
 {
 std::cerr << "Reading file failed; message:" << std::endl;
 PRINT_LAST_ERROR;
 return result;
 }
 
 // get 3d entities and pack a buffer with them
 Range ents, whole_range;
 std::vector< EntityHandle > new_ents;
 result = mbImpl->get_entities_by_handle( file_set, ents );
 RRA( "Getting 3d ents failed." );
 
 ents.insert( file_set );
 
 ParallelComm* pcomm = new ParallelComm( mbImpl, MPI_COMM_WORLD );
 
 ParallelComm::Buffer buff;
 result = pcomm->pack_buffer( ents, false, true, false, -1, &buff );
 RRA( "Packing buffer count (non-stored handles) failed." );
 
 std::vector< std::vector< EntityHandle > > L1hloc, L1hrem;
 std::vector< std::vector< int > > L1p;
 std::vector< EntityHandle > L2hloc, L2hrem;
 std::vector< unsigned int > L2p;
 
 buff.reset_ptr();
 result = pcomm->unpack_buffer( buff.buff_ptr, false, -1, -1, L1hloc, L1hrem, L1p, L2hloc, L2hrem, L2p, new_ents );
 RRA( "Unpacking buffer (non-stored handles) failed." );
 
 return MB_SUCCESS;
}

References moab::ParallelComm::Buffer::buff_ptr, moab::Interface::create_meshset(), ErrorCode, filename, moab::Interface::get_entities_by_handle(), moab::Range::insert(), moab::Interface::load_file(), MB_SUCCESS, MESHSET_SET, MPI_COMM_WORLD, moab::ParallelComm::pack_buffer(), PRINT_LAST_ERROR, moab::ParallelComm::Buffer::reset_ptr(), RRA, and moab::ParallelComm::unpack_buffer().

Referenced by main().

Variable Documentation

debug

const bool debug = false

Definition at line 24 of file mbparallelcomm_test.cpp.