moab::WriteVtk Class Reference

#include <WriteVtk.hpp>

Inheritance diagram for moab::WriteVtk:

Collaboration diagram for moab::WriteVtk:

Public Member Functions
	WriteVtk (Interface *impl)
	Constructor. More...
virtual	~WriteVtk ()
	Destructor. More...
ErrorCode	write_file (const char *file_name, const bool overwrite, const FileOptions &opts, const EntityHandle *output_list, const int num_sets, const std::vector< std::string > &qa_list, const Tag *tag_list=NULL, int num_tags=0, int export_dimension=3)
	writes out a file More...
Public Member Functions inherited from moab::WriterIface
virtual	~WriterIface ()

Static Public Member Functions
static WriterIface *	factory (Interface *)

Private Member Functions
ErrorCode	gather_mesh (const EntityHandle *set_list, int num_sets, Range &nodes, Range &elems)
	Get entities to write, given set list passed to write_file. More...
ErrorCode	write_header (std::ostream &stream)
	Write 4-line VTK file header. More...
ErrorCode	write_nodes (std::ostream &stream, const Range &nodes)
	Write node coordinates. More...
ErrorCode	write_elems (std::ostream &stream, const Range &nodes, const Range &elems)
	Write element connectivity. More...
ErrorCode	write_tags (std::ostream &stream, bool nodes, const Range &entities, const Tag *tag_list, int num_tags)
	Write all tags on either the list of nodes or the list of elements. More...
ErrorCode	write_tag (std::ostream &stream, Tag tag, const Range &entities, const Range &tagged_entities)
	Write the tad description for the passed tag and call the template write_tag function to write the tag data. More...
template<typename T >
ErrorCode	write_tag (std::ostream &stream, Tag tag, const Range &entities, const Range &tagged_entities, const int)
	Write tag data. More...
ErrorCode	write_bit_tag (std::ostream &stream, Tag tag, const Range &entities, const Range &tagged_entities)
template<typename T >
void	write_data (std::ostream &stream, const std::vector< T > &data, unsigned vals_per_tag)
	Write a list of values. More...

Private Attributes
Interface *	mbImpl
WriteUtilIface *	writeTool
bool	mStrict
int	freeNodes
bool	createOneNodeCells

Detailed Description

Definition at line 30 of file WriteVtk.hpp.

Constructor & Destructor Documentation

WriteVtk()

moab::WriteVtk::WriteVtk

(

Interface *

impl

)

Constructor.

Definition at line 56 of file WriteVtk.cpp.

    : mbImpl( impl ), writeTool( 0 ), mStrict( DEFAULT_STRICT ), freeNodes( 0 ), createOneNodeCells( false )
{
    assert( impl != NULL );
    impl->query_interface( writeTool );
}

References moab::Interface::query_interface(), and writeTool.

Referenced by factory().

~WriteVtk()

moab::WriteVtk::~WriteVtk ( )

virtual

Destructor.

Definition at line 63 of file WriteVtk.cpp.

{
    mbImpl->release_interface( writeTool );
}

References mbImpl, moab::Interface::release_interface(), and writeTool.

Member Function Documentation

factory()

WriterIface * moab::WriteVtk::factory ( Interface *  iface )

static

Definition at line 51 of file WriteVtk.cpp.

{
    return new WriteVtk( iface );
}

References iface, and WriteVtk().

Referenced by moab::ReaderWriterSet::ReaderWriterSet().

gather_mesh()

ErrorCode moab::WriteVtk::gather_mesh ( const EntityHandle *  set_list, int  num_sets, Range &  nodes, Range &  elems  )

private

Get entities to write, given set list passed to write_file.

Definition at line 127 of file WriteVtk.cpp.

{
    ErrorCode rval;
    int e;
 
    if( !set_list || !num_sets )
    {
        Range a;
        rval = mbImpl->get_entities_by_handle( 0, a );
        if( MB_SUCCESS != rval ) return rval;
 
        Range::const_iterator node_i, elem_i, set_i;
        node_i = a.lower_bound( a.begin(), a.end(), CREATE_HANDLE( MBVERTEX, 0, e ) );
        elem_i = a.lower_bound( node_i, a.end(), CREATE_HANDLE( MBEDGE, 0, e ) );
        set_i  = a.lower_bound( elem_i, a.end(), CREATE_HANDLE( MBENTITYSET, 0, e ) );
        nodes.merge( node_i, elem_i );
        elems.merge( elem_i, set_i );
 
        // Filter out unsupported element types
        EntityType et = MBEDGE;
        for( et++; et < MBENTITYSET; et++ )
        {
            if( VtkUtil::get_vtk_type( et, CN::VerticesPerEntity( et ) ) ) continue;
            Range::iterator eit   = elems.lower_bound( elems.begin(), elems.end(), CREATE_HANDLE( et, 0, e ) ),
                            ep1it = elems.lower_bound( elems.begin(), elems.end(), CREATE_HANDLE( et + 1, 0, e ) );
            elems.erase( eit, ep1it );
        }
    }
    else
    {
        std::set< EntityHandle > visited;
        std::vector< EntityHandle > sets;
        sets.reserve( num_sets );
        std::copy( set_list, set_list + num_sets, std::back_inserter( sets ) );
        while( !sets.empty() )
        {
            // Get next set
            EntityHandle set = sets.back();
            sets.pop_back();
            // Skip sets we've already done
            if( !visited.insert( set ).second ) continue;
 
            Range a;
            rval = mbImpl->get_entities_by_handle( set, a );
            if( MB_SUCCESS != rval ) return rval;
 
            Range::const_iterator node_i, elem_i, set_i;
            node_i = a.lower_bound( a.begin(), a.end(), CREATE_HANDLE( MBVERTEX, 0, e ) );
            elem_i = a.lower_bound( node_i, a.end(), CREATE_HANDLE( MBEDGE, 0, e ) );
            set_i  = a.lower_bound( elem_i, a.end(), CREATE_HANDLE( MBENTITYSET, 0, e ) );
            nodes.merge( node_i, elem_i );
            elems.merge( elem_i, set_i );
            std::copy( set_i, a.end(), std::back_inserter( sets ) );
 
            a.clear();
            rval = mbImpl->get_child_meshsets( set, a );
            std::copy( a.begin(), a.end(), std::back_inserter( sets ) );
        }
 
        for( Range::const_iterator ei = elems.begin(); ei != elems.end(); ++ei )
        {
            std::vector< EntityHandle > connect;
            rval = mbImpl->get_connectivity( &( *ei ), 1, connect );
            if( MB_SUCCESS != rval ) return rval;
 
            for( unsigned int i = 0; i < connect.size(); ++i )
                nodes.insert( connect[i] );
        }
    }
 
    if( nodes.empty() )
    {
        MB_SET_ERR( MB_ENTITY_NOT_FOUND, "Nothing to write" );
    }
 
    return MB_SUCCESS;
}

References moab::Range::begin(), moab::Range::clear(), moab::CREATE_HANDLE(), moab::Range::empty(), moab::Range::end(), moab::Range::erase(), ErrorCode, moab::Interface::get_child_meshsets(), moab::Interface::get_connectivity(), moab::Interface::get_entities_by_handle(), moab::VtkUtil::get_vtk_type(), moab::Range::insert(), moab::Range::lower_bound(), MB_ENTITY_NOT_FOUND, MB_SET_ERR, MB_SUCCESS, MBEDGE, MBENTITYSET, mbImpl, MBVERTEX, moab::Range::merge(), and moab::CN::VerticesPerEntity().

Referenced by write_file().

write_bit_tag()

ErrorCode moab::WriteVtk::write_bit_tag ( std::ostream &  stream, Tag  tag, const Range &  entities, const Range &  tagged_entities  )

private

Definition at line 550 of file WriteVtk.cpp.

{
    ErrorCode rval;
    const unsigned long n = entities.size();
 
    // Get tag properties
 
    std::string name;
    int vals_per_tag;
    if( MB_SUCCESS != mbImpl->tag_get_name( tag, name ) || MB_SUCCESS != mbImpl->tag_get_length( tag, vals_per_tag ) )
        return MB_FAILURE;
 
    if( vals_per_tag > 8 )
    {
        MB_SET_ERR( MB_FAILURE, "Invalid tag size for bit tag \"" << name << "\"" );
    }
 
    // Get a tag value for each entity.
    // Get bits for each entity and unpack into
    // one integer in the 'data' array for each bit.
    // Initialize 'data' to zero because we will skip
    // those entities for which the tag is not set.
    std::vector< unsigned short > data;
    data.resize( n * vals_per_tag, 0 );
    Range::const_iterator t                   = tagged.begin();
    std::vector< unsigned short >::iterator d = data.begin();
    for( Range::const_iterator i = entities.begin(); i != entities.end() && t != tagged.end(); ++i )
    {
        if( *i == *t )
        {
            ++t;
            unsigned char value;
            rval = mbImpl->tag_get_data( tag, &( *i ), 1, &value );
            for( int j = 0; j < vals_per_tag; ++j, ++d )
                *d = (unsigned short)( value & ( 1 << j ) ? 1 : 0 );
            if( MB_SUCCESS != rval ) return rval;
        }
        else
        {
            // If tag is not set for entity, skip values in array
            d += vals_per_tag;
        }
    }
 
    // Write the tag values, one entity per line.
    write_data( stream, data, vals_per_tag );
 
    return MB_SUCCESS;
}

References moab::Range::begin(), moab::Range::end(), entities, ErrorCode, MB_SET_ERR, MB_SUCCESS, mbImpl, moab::Interface::tag_get_data(), moab::Interface::tag_get_length(), moab::Interface::tag_get_name(), and write_data().

Referenced by write_tag().

write_data()

template<typename T >

void moab::WriteVtk::write_data ( std::ostream &  stream, const std::vector< T > &  data, unsigned  vals_per_tag  )

private

Write a list of values.

Definition at line 471 of file WriteVtk.cpp.

{
    typename std::vector< T >::const_iterator d = data.begin();
    const unsigned long n                       = data.size() / vals_per_tag;
 
    for( unsigned long i = 0; i < n; ++i )
    {
        for( unsigned j = 0; j < vals_per_tag; ++j, ++d )
        {
            if( sizeof( T ) == 1 )
                stream << (unsigned int)*d << ' ';
            else
                stream << *d << ' ';
        }
        stream << std::endl;
    }
}

Referenced by write_bit_tag(), and write_tag().

write_elems()

ErrorCode moab::WriteVtk::write_elems ( std::ostream &  stream, const Range &  nodes, const Range &  elems  )

private

Write element connectivity.

Definition at line 232 of file WriteVtk.cpp.

{
    ErrorCode rval;
 
    Range connectivity;  // because we now support polyhedra, it could contain faces
    rval = mbImpl->get_connectivity( elems, connectivity );MB_CHK_ERR( rval );
 
    Range nodes_from_connectivity = connectivity.subset_by_type( MBVERTEX );
    Range faces_from_connectivity =
        subtract( connectivity, nodes_from_connectivity );  // these could be faces of polyhedra
 
    Range connected_nodes;
    rval = mbImpl->get_connectivity( faces_from_connectivity, connected_nodes );MB_CHK_ERR( rval );
    connected_nodes.merge( nodes_from_connectivity );
 
    Range free_nodes = subtract( nodes, connected_nodes );
 
    // Get and write counts
    unsigned long num_elems, num_uses;
    num_elems = num_uses = elems.size();
 
    std::map< EntityHandle, int > sizeFieldsPolyhedra;
 
    for( Range::const_iterator i = elems.begin(); i != elems.end(); ++i )
    {
        EntityType type = mbImpl->type_from_handle( *i );
        if( !VtkUtil::get_vtk_type( type, CN::VerticesPerEntity( type ) ) ) continue;
 
        EntityHandle elem           = *i;
        const EntityHandle* connect = NULL;
        int conn_len                = 0;
        // Dummy storage vector for structured mesh "get_connectivity" function
        std::vector< EntityHandle > storage;
        rval = mbImpl->get_connectivity( elem, connect, conn_len, false, &storage );MB_CHK_ERR( rval );
 
        num_uses += conn_len;
        // if polyhedra, we will count the number of nodes in each face too
        if( TYPE_FROM_HANDLE( elem ) == MBPOLYHEDRON )
        {
            int numFields = 1;  // there will be one for number of faces; forgot about this one
            for( int j = 0; j < conn_len; j++ )
            {
                const EntityHandle* conn = NULL;
                int num_nd               = 0;
                rval                     = mbImpl->get_connectivity( connect[j], conn, num_nd );MB_CHK_ERR( rval );
                numFields += num_nd + 1;
            }
            sizeFieldsPolyhedra[elem] = numFields;  // will be used later, at writing
            num_uses += ( numFields - conn_len );
        }
    }
    freeNodes = (int)free_nodes.size();
    if( !createOneNodeCells ) freeNodes = 0;  // do not create one node cells
    stream << "CELLS " << num_elems + freeNodes << ' ' << num_uses + 2 * freeNodes << std::endl;
 
    // Write element connectivity
    std::vector< int > conn_data;
    std::vector< unsigned > vtk_types( elems.size() + freeNodes );
    std::vector< unsigned >::iterator t = vtk_types.begin();
    for( Range::const_iterator i = elems.begin(); i != elems.end(); ++i )
    {
        // Get type information for element
        EntityHandle elem = *i;
        EntityType type   = TYPE_FROM_HANDLE( elem );
 
        // Get element connectivity
        const EntityHandle* connect = NULL;
        int conn_len                = 0;
        // Dummy storage vector for structured mesh "get_connectivity" function
        std::vector< EntityHandle > storage;
        rval = mbImpl->get_connectivity( elem, connect, conn_len, false, &storage );MB_CHK_ERR( rval );
 
        // Get VTK type
        const VtkElemType* vtk_type = VtkUtil::get_vtk_type( type, conn_len );
        if( !vtk_type )
        {
            // Try connectivity with 1 fewer node
            vtk_type = VtkUtil::get_vtk_type( type, conn_len - 1 );
            if( vtk_type )
                conn_len--;
            else
            {
                MB_SET_ERR( MB_FAILURE, "Vtk file format does not support elements of type "
                                            << CN::EntityTypeName( type ) << " (" << (int)type << ") with " << conn_len
                                            << " nodes" );
            }
        }
 
        // Save VTK type index for later
        *t = vtk_type->vtk_type;
        ++t;
 
        if( type != MBPOLYHEDRON )
        {
            // Get IDs from vertex handles
            assert( conn_len > 0 );
            conn_data.resize( conn_len );
            for( int j = 0; j < conn_len; ++j )
                conn_data[j] = nodes.index( connect[j] );
 
            // Write connectivity list
            stream << conn_len;
            if( vtk_type->node_order )
                for( int k = 0; k < conn_len; ++k )
                    stream << ' ' << conn_data[vtk_type->node_order[k]];
            else
                for( int k = 0; k < conn_len; ++k )
                    stream << ' ' << conn_data[k];
            stream << std::endl;
        }
        else
        {
            // POLYHEDRON needs a special case, loop over faces to get nodes
            stream << sizeFieldsPolyhedra[elem] << " " << conn_len;
            for( int k = 0; k < conn_len; k++ )
            {
                EntityHandle face        = connect[k];
                const EntityHandle* conn = NULL;
                int num_nodes            = 0;
                rval                     = mbImpl->get_connectivity( face, conn, num_nodes );MB_CHK_ERR( rval );
                //        num_uses += num_nd + 1; // 1 for number of vertices in face
                conn_data.resize( num_nodes );
                for( int j = 0; j < num_nodes; ++j )
                    conn_data[j] = nodes.index( conn[j] );
 
                stream << ' ' << num_nodes;
 
                for( int j = 0; j < num_nodes; ++j )
                    stream << ' ' << conn_data[j];
            }
            stream << std::endl;
        }
    }
 
    if( createOneNodeCells )
        for( Range::const_iterator v = free_nodes.begin(); v != free_nodes.end(); ++v, ++t )
        {
            EntityHandle node = *v;
            stream << "1 " << nodes.index( node ) << std::endl;
            *t = 1;
        }
 
    // Write element types
    stream << "CELL_TYPES " << vtk_types.size() << std::endl;
    for( std::vector< unsigned >::const_iterator i = vtk_types.begin(); i != vtk_types.end(); ++i )
        stream << *i << std::endl;
 
    return MB_SUCCESS;
}

References moab::Range::begin(), createOneNodeCells, moab::Range::end(), moab::CN::EntityTypeName(), ErrorCode, freeNodes, moab::Interface::get_connectivity(), moab::VtkUtil::get_vtk_type(), moab::Range::index(), MB_CHK_ERR, MB_SET_ERR, MB_SUCCESS, mbImpl, MBPOLYHEDRON, MBVERTEX, moab::Range::merge(), moab::VtkElemType::node_order, moab::Range::size(), moab::Range::subset_by_type(), moab::subtract(), moab::Interface::type_from_handle(), moab::TYPE_FROM_HANDLE(), moab::CN::VerticesPerEntity(), and moab::VtkElemType::vtk_type.

Referenced by write_file().

write_file()

ErrorCode moab::WriteVtk::write_file ( const char *  file_name, const bool  overwrite, const FileOptions &  opts, const EntityHandle *  output_list, const int  num_sets, const std::vector< std::string > &  qa_list, const Tag *  tag_list = NULL, int  num_tags = 0, int  export_dimension = 3  )

virtual

writes out a file

Implements moab::WriterIface.

Definition at line 68 of file WriteVtk.cpp.

{
    ErrorCode rval;
 
    // Get precision for node coordinates
    int precision;
    if( MB_SUCCESS != opts.get_int_option( "PRECISION", precision ) ) precision = DEFAULT_PRECISION;
 
    if( MB_SUCCESS == opts.get_null_option( "STRICT" ) )
        mStrict = true;
    else if( MB_SUCCESS == opts.get_null_option( "RELAXED" ) )
        mStrict = false;
    else
        mStrict = DEFAULT_STRICT;
 
    if( MB_SUCCESS == opts.get_null_option( "CREATE_ONE_NODE_CELLS" ) ) createOneNodeCells = true;
 
    // Get entities to write
    Range nodes, elems;
    rval = gather_mesh( output_list, num_sets, nodes, elems );
    if( MB_SUCCESS != rval ) return rval;
 
    // Honor overwrite flag
    if( !overwrite )
    {
        rval = writeTool->check_doesnt_exist( file_name );
        if( MB_SUCCESS != rval ) return rval;
    }
 
    // Create file
    std::ofstream file( file_name );
    if( !file )
    {
        MB_SET_ERR( MB_FILE_WRITE_ERROR, "Could not open file: " << file_name );
    }
    file.precision( precision );
 
    // Write file
    if( ( rval = write_header( file ) ) != MB_SUCCESS || ( rval = write_nodes( file, nodes ) ) != MB_SUCCESS ||
        ( rval = write_elems( file, nodes, elems ) ) != MB_SUCCESS ||
        ( rval = write_tags( file, true, nodes, tag_list, num_tags ) ) != MB_SUCCESS ||
        ( rval = write_tags( file, false, elems, tag_list, num_tags ) ) != MB_SUCCESS )
    {
        file.close();
        remove( file_name );
        return rval;
    }
 
    return MB_SUCCESS;
}

References moab::WriteUtilIface::check_doesnt_exist(), createOneNodeCells, moab::DEFAULT_PRECISION, moab::DEFAULT_STRICT, ErrorCode, gather_mesh(), moab::FileOptions::get_int_option(), moab::FileOptions::get_null_option(), MB_FILE_WRITE_ERROR, MB_SET_ERR, MB_SUCCESS, mStrict, write_elems(), write_header(), write_nodes(), write_tags(), and writeTool.

Referenced by moab::Core::write_file().

write_header()

ErrorCode moab::WriteVtk::write_header ( std::ostream &  stream )

private

Write 4-line VTK file header.

Definition at line 205 of file WriteVtk.cpp.

{
    stream << "# vtk DataFile Version 3.0" << std::endl;
    stream << MOAB_VERSION_STRING << std::endl;
    stream << "ASCII" << std::endl;
    stream << "DATASET UNSTRUCTURED_GRID" << std::endl;
    return MB_SUCCESS;
}

References MB_SUCCESS, and MOAB_VERSION_STRING.

Referenced by write_file().

write_nodes()

ErrorCode moab::WriteVtk::write_nodes ( std::ostream &  stream, const Range &  nodes  )

private

Write node coordinates.

Definition at line 214 of file WriteVtk.cpp.

{
    ErrorCode rval;
 
    stream << "POINTS " << nodes.size() << " double" << std::endl;
 
    double coords[3];
    for( Range::const_iterator i = nodes.begin(); i != nodes.end(); ++i )
    {
        coords[1] = coords[2] = 0.0;
        rval                  = mbImpl->get_coords( &( *i ), 1, coords );
        if( MB_SUCCESS != rval ) return rval;
        stream << coords[0] << ' ' << coords[1] << ' ' << coords[2] << std::endl;
    }
 
    return MB_SUCCESS;
}

References moab::Range::begin(), moab::Range::end(), ErrorCode, moab::Interface::get_coords(), MB_SUCCESS, mbImpl, and moab::Range::size().

Referenced by write_file().

write_tag() [1/2]

ErrorCode moab::WriteVtk::write_tag ( std::ostream &  stream, Tag  tag, const Range &  entities, const Range &  tagged_entities  )

private

Write the tad description for the passed tag and call the template write_tag function to write the tag data.

Definition at line 600 of file WriteVtk.cpp.

{
    // Get tag properties
    std::string name;
    DataType type;
    int vals_per_tag;
    if( MB_SUCCESS != mbImpl->tag_get_name( tag, name ) || MB_SUCCESS != mbImpl->tag_get_length( tag, vals_per_tag ) ||
        MB_SUCCESS != mbImpl->tag_get_data_type( tag, type ) )
        return MB_FAILURE;
 
    // Skip tags of type ENTITY_HANDLE
    if( MB_TYPE_HANDLE == type ) return MB_FAILURE;
 
    // Now that we're past the point where the name would be used in
    // an error message, remove any spaces to conform to VTK file.
    for( std::string::iterator i = name.begin(); i != name.end(); ++i )
    {
        if( isspace( *i ) || iscntrl( *i ) ) *i = '_';
    }
 
    // Write the tag description
    if( 3 == vals_per_tag && MB_TYPE_DOUBLE == type )
        s << "VECTORS " << name << ' ' << VtkUtil::vtkTypeNames[type] << std::endl;
    else if( 9 == vals_per_tag )
        s << "TENSORS " << name << ' ' << VtkUtil::vtkTypeNames[type] << std::endl;
    else
        s << "SCALARS " << name << ' ' << VtkUtil::vtkTypeNames[type] << ' ' << vals_per_tag << std::endl
          << "LOOKUP_TABLE default" << std::endl;
 
    // Write the tag data
    switch( type )
    {
        case MB_TYPE_OPAQUE:
            return write_tag< unsigned char >( s, tag, entities, tagged, 0 );
        case MB_TYPE_INTEGER:
            return write_tag< int >( s, tag, entities, tagged, 0 );
        case MB_TYPE_DOUBLE:
            return write_tag< double >( s, tag, entities, tagged, 0 );
        case MB_TYPE_BIT:
            return write_bit_tag( s, tag, entities, tagged );
        default:
            return MB_FAILURE;
    }
}

References entities, MB_SUCCESS, MB_TYPE_BIT, MB_TYPE_DOUBLE, MB_TYPE_HANDLE, MB_TYPE_INTEGER, MB_TYPE_OPAQUE, mbImpl, moab::Interface::tag_get_data_type(), moab::Interface::tag_get_length(), moab::Interface::tag_get_name(), moab::VtkUtil::vtkTypeNames, and write_bit_tag().

Referenced by write_tags().

write_tag() [2/2]

template<typename T >

ErrorCode moab::WriteVtk::write_tag ( std::ostream &  stream, Tag  tag, const Range &  entities, const Range &  tagged_entities, const int    )

private

Write tag data.

Definition at line 505 of file WriteVtk.cpp.

{
    ErrorCode rval;
    int addFreeNodes = 0;
    if( TYPE_FROM_HANDLE( entities[0] ) > MBVERTEX ) addFreeNodes = freeNodes;
    // we created freeNodes 1-node cells, so we have to augment cell data too
    // we know that the 1 node cells are added at the end, after all other cells;
    // so the default values will be set to those extra , artificial cells
    const unsigned long n = entities.size() + addFreeNodes;
 
    // Get tag properties
 
    std::string name;
    int vals_per_tag;
    if( MB_SUCCESS != mbImpl->tag_get_name( tag, name ) || MB_SUCCESS != mbImpl->tag_get_length( tag, vals_per_tag ) )
        return MB_FAILURE;
 
    // Get a tag value for each entity. Do this by initializing the
    // "data" vector with zero, and then filling in the values for
    // the entities that actually have the tag set.
    std::vector< T > data;
    data.resize( n * vals_per_tag, 0 );
    // If there is a default value for the tag, set the actual default value
    std::vector< T > def_value( vals_per_tag );
    rval = mbImpl->tag_get_default_value( tag, &( def_value[0] ) );
    if( MB_SUCCESS == rval ) SysUtil::setmem( &( data[0] ), &( def_value[0] ), vals_per_tag * sizeof( T ), n );
 
    Range::const_iterator t               = tagged.begin();
    typename std::vector< T >::iterator d = data.begin();
    for( Range::const_iterator i = entities.begin(); i != entities.end() && t != tagged.end(); ++i, d += vals_per_tag )
    {
        if( *i == *t )
        {
            ++t;
            rval = mbImpl->tag_get_data( tag, &( *i ), 1, &( *d ) );
            if( MB_SUCCESS != rval ) return rval;
        }
    }
 
    // Write the tag values, one entity per line.
    write_data( stream, data, vals_per_tag );
 
    return MB_SUCCESS;
}

References moab::Range::begin(), moab::Range::end(), entities, ErrorCode, freeNodes, MB_SUCCESS, mbImpl, MBVERTEX, moab::SysUtil::setmem(), moab::Interface::tag_get_data(), moab::Interface::tag_get_default_value(), moab::Interface::tag_get_length(), moab::Interface::tag_get_name(), moab::TYPE_FROM_HANDLE(), and write_data().

write_tags()

ErrorCode moab::WriteVtk::write_tags ( std::ostream &  stream, bool  nodes, const Range &  entities, const Tag *  tag_list, int  num_tags  )

private

Write all tags on either the list of nodes or the list of elements.

Definition at line 382 of file WriteVtk.cpp.

{
    ErrorCode rval;
 
    // The #$%@#$% MOAB interface does not have a function to retrieve
    // all entities with a tag, only all entities with a specified type
    // and tag. Define types to loop over depending on the if vertex
    // or element tag data is being written. It seems horribly inefficient
    // to have the implementation subdivide the results by type and have
    // to call that function once for each type just to recombine the results.
    // Unfortunately, there doesn't seem to be any other way.
    EntityType low_type, high_type;
    if( nodes )
    {
        low_type  = MBVERTEX;
        high_type = MBEDGE;
    }
    else
    {
        low_type  = MBEDGE;
        high_type = MBENTITYSET;
    }
 
    // Get all defined tags
    std::vector< Tag > tags;
    std::vector< Tag >::iterator i;
    rval = writeTool->get_tag_list( tags, tag_list, num_tags, false );
    if( MB_SUCCESS != rval ) return rval;
 
    // For each tag...
    bool entities_have_tags = false;
    for( i = tags.begin(); i != tags.end(); ++i )
    {
        // Skip tags holding entity handles -- no way to save them
        DataType dtype;
        rval = mbImpl->tag_get_data_type( *i, dtype );
        if( MB_SUCCESS != rval ) return rval;
        if( dtype == MB_TYPE_HANDLE ) continue;
 
        // If in strict mode, don't write tags that do not fit in any
        // attribute type (SCALAR : 1 to 4 values, VECTOR : 3 values, TENSOR : 9 values)
        if( mStrict )
        {
            int count;
            rval = mbImpl->tag_get_length( *i, count );
            if( MB_SUCCESS != rval ) return rval;
            if( count < 1 || ( count > 4 && count != 9 ) ) continue;
        }
 
        // Get subset of input entities that have the tag set
        Range tagged;
        for( EntityType type = low_type; type < high_type; ++type )
        {
            Range tmp_tagged;
            rval = mbImpl->get_entities_by_type_and_tag( 0, type, &( *i ), 0, 1, tmp_tagged );
            if( MB_SUCCESS != rval ) return rval;
            tmp_tagged = intersect( tmp_tagged, entities );
            tagged.merge( tmp_tagged );
        }
 
        // If any entities were tagged
        if( !tagged.empty() )
        {
            // If this is the first tag being written for the
            // entity type, write the label marking the beginning
            // of the tag data.
            if( !entities_have_tags )
            {
                entities_have_tags = true;
                if( nodes )
                    stream << "POINT_DATA " << entities.size() << std::endl;
                else
                    stream << "CELL_DATA " << entities.size() + freeNodes << std::endl;
            }
 
            // Write the tag
            rval = write_tag( stream, *i, entities, tagged );
            if( MB_SUCCESS != rval ) return rval;
        }
    }
 
    return MB_SUCCESS;
}

References moab::Range::empty(), entities, ErrorCode, freeNodes, moab::Interface::get_entities_by_type_and_tag(), moab::WriteUtilIface::get_tag_list(), moab::intersect(), MB_SUCCESS, MB_TYPE_HANDLE, MBEDGE, MBENTITYSET, mbImpl, MBVERTEX, moab::Range::merge(), mStrict, moab::Interface::tag_get_data_type(), moab::Interface::tag_get_length(), write_tag(), and writeTool.

Referenced by write_file().

Member Data Documentation

createOneNodeCells

bool moab::WriteVtk::createOneNodeCells

private

Definition at line 91 of file WriteVtk.hpp.

Referenced by write_elems(), and write_file().

freeNodes

int moab::WriteVtk::freeNodes

private

Definition at line 90 of file WriteVtk.hpp.

Referenced by write_elems(), write_tag(), and write_tags().

mbImpl

Interface* moab::WriteVtk::mbImpl

private

Definition at line 86 of file WriteVtk.hpp.

Referenced by gather_mesh(), write_bit_tag(), write_elems(), write_nodes(), write_tag(), write_tags(), and ~WriteVtk().

mStrict

bool moab::WriteVtk::mStrict

private

Definition at line 89 of file WriteVtk.hpp.

Referenced by write_file(), and write_tags().

writeTool

WriteUtilIface* moab::WriteVtk::writeTool

private

Definition at line 87 of file WriteVtk.hpp.

Referenced by write_file(), write_tags(), WriteVtk(), and ~WriteVtk().

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The documentation for this class was generated from the following files:

• WriteVtk.hpp
• WriteVtk.cpp