cgm2moab.cpp File Reference

#include "cgm2moab.hpp"
#include "moab/ProgOptions.hpp"
#include "moab/Core.hpp"
#include "moab/Range.hpp"
#include "moab/CartVect.hpp"
#include "MBTagConventions.hpp"
#include "moab/GeomQueryTool.hpp"
#include "moab/GeomTopoTool.hpp"
#include <sstream>
#include <iomanip>
#include <cstdlib>
#include <algorithm>
#include <cstdio>

Include dependency graph for cgm2moab.cpp:

Go to the source code of this file.

Macros
#define	OPTION_APPEND(X)

Functions
void	chkerr (Interface *mbi, ErrorCode code, int line, const char *file)
void	chkerr (Interface &mbi, ErrorCode code, int line, const char *file)
void	chkerr (GeomTopoTool &gtt, ErrorCode code, int line, const char *file)
static ErrorCode	get_signed_volume (Interface *MBI, const EntityHandle surf_set, const CartVect &offset, double &signed_volume)
static ErrorCode	replace_surface (Interface *mbi, EntityHandle old_surf, EntityHandle old_file_set, EntityHandle new_surf, const Tag &senseTag)
static ErrorCode	merge_input_surfs (Interface *mbi, const EntityHandle old_file_set, const EntityHandle new_file_set, const Tag &idTag, const Tag &dimTag, const Tag &senseTag)
int	main (int argc, char *argv[])

Variables
bool	verbose = false
	program-wide verbose output flag More...

Macro Definition Documentation

OPTION_APPEND

#define OPTION_APPEND

(

X

)

Value:

    {                                          \
        if( options.length() ) options += ";"; \
        options += ( X );                      \
    }

Function Documentation

chkerr() [1/3]

void chkerr	(	GeomTopoTool &	gtt,
		ErrorCode	code,
		int	line,
		const char *	file
	)

Definition at line 46 of file cgm2moab.cpp.

{
    chkerr( gtt.get_moab_instance(), code, line, file );
}

References chkerr(), and moab::GeomTopoTool::get_moab_instance().

chkerr() [2/3]

void chkerr	(	Interface &	mbi,
		ErrorCode	code,
		int	line,
		const char *	file
	)

Definition at line 41 of file cgm2moab.cpp.

{
    chkerr( &mbi, code, line, file );
}

References chkerr().

chkerr() [3/3]

void chkerr	(	Interface *	mbi,
		ErrorCode	code,
		int	line,
		const char *	file
	)

Generic halt-on-error error checking

Definition at line 21 of file cgm2moab.cpp.

{
 
    if( code != MB_SUCCESS )
    {
        std::cerr << "Error: " << mbi->get_error_string( code ) << " (" << code << ")" << std::endl;
        std::string message;
        if( MB_SUCCESS == mbi->get_last_error( message ) && !message.empty() )
            std::cerr << "Error message: " << message << std::endl;
        std::string fname = file;
        size_t slash      = fname.find_last_of( '/' );
        if( slash != fname.npos )
        {
            fname = fname.substr( slash + 1 );
        }
        std::cerr << "At " << fname << " line: " << line << std::endl;
        std::exit( EXIT_FAILURE );
    }
}

References moab::Interface::get_error_string(), moab::Interface::get_last_error(), and MB_SUCCESS.

Referenced by chkerr().

get_signed_volume()

static ErrorCode get_signed_volume ( Interface *  MBI, const EntityHandle  surf_set, const CartVect &  offset, double &  signed_volume  )

static

Estimate the volume of the surface (actually multiplied by a factor of six). See DagMC::measure_volume, from which this code is borrowed, for algorithmic details. For our purpose, all that matters is the signedness.

Parameters

offset

Offset to apply to surface to avoid a zero result.

Definition at line 58 of file cgm2moab.cpp.

{
    ErrorCode rval;
    Range tris;
    rval = MBI->get_entities_by_type( surf_set, MBTRI, tris );
    if( MB_SUCCESS != rval ) return rval;
 
    signed_volume = 0.0;
    const EntityHandle* conn;
    int len;
    CartVect coords[3];
    for( Range::iterator j = tris.begin(); j != tris.end(); ++j )
    {
        rval = MBI->get_connectivity( *j, conn, len, true );
        if( MB_SUCCESS != rval ) return rval;
        if( 3 != len ) return MB_INVALID_SIZE;
        rval = MBI->get_coords( conn, 3, coords[0].array() );
        if( MB_SUCCESS != rval ) return rval;
 
        // Apply offset to avoid calculating 0 for cases when the origin is in the
        // plane of the surface.
        for( unsigned int k = 0; k < 3; ++k )
        {
            coords[k] += offset;
        }
 
        coords[1] -= coords[0];
        coords[2] -= coords[0];
        signed_volume += ( coords[0] % ( coords[1] * coords[2] ) );
    }
    return MB_SUCCESS;
}

References moab::Range::begin(), moab::Range::end(), ErrorCode, MB_INVALID_SIZE, MB_SUCCESS, MBI, and MBTRI.

Referenced by replace_surface().

main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 260 of file cgm2moab.cpp.

{
 
    ProgOptions po( "cgm2moab: a tool for preprocessing CAD and mesh files for analysis" );
 
    std::string input_file;
    std::string output_file = "dagmc_preproc_out.h5m";
    int grid                = 50;
 
    po.addOpt< void >( ",v", "Verbose output", &verbose );
    po.addOpt< std::string >( "outmesh,o", "Specify output file name (default " + output_file + ")", &output_file );
    po.addOpt< void >( "no-outmesh,", "Do not write an output mesh" );
    po.addOpt< std::string >( ",m", "Specify alternate input mesh to override surfaces in input_file" );
    po.addOpt< std::string >( "obb-vis,O", "Specify obb visualization output file (default none)" );
    po.addOpt< int >( "obb-vis-divs", "Resolution of obb visualization grid (default 50)", &grid );
    po.addOpt< void >( "obb-stats,S", "Print obb statistics.  With -v, print verbose statistics." );
    po.addOpt< std::vector< int > >( "vols,V",
                                     "Specify a set of volumes (applies to --obb_vis and --obb_stats, default all)" );
    po.addOptionHelpHeading( "Options for loading CAD files" );
    po.addOpt< double >( "ftol,f", "Faceting distance tolerance", po.add_cancel_opt );
    po.addOpt< double >( "ltol,l", "Faceting edge length tolerance", po.add_cancel_opt );
    po.addOpt< int >( "atol,a", "Faceting normal angle tolerance (degrees)", po.add_cancel_opt );
    po.addOpt< void >( "all-warnings", "Verbose warnings about attributes and curve tolerances" );
    po.addOpt< void >( "no-attribs", "Do not actuate CGM attributes" );
    po.addOpt< void >( "fatal_curves", "Fatal Error when curves cannot be faceted" );
 
    po.addRequiredArg< std::string >( "input_file", "Path to input file for preprocessing", &input_file );
 
    po.parseCommandLine( argc, argv );
 
    /* Check that user has asked for at least one useful thing to be done */
    bool obb_task = po.numOptSet( "obb-vis" ) || po.numOptSet( "obb-stats" );
 
    if( po.numOptSet( "no-outmesh" ) && !obb_task )
    {
        po.error( "Nothing to do.  Please specify an OBB-related option, or remove --no_outmesh." );
    }
 
    /* Load input file, with CAD processing options, if specified */
    std::string options;
#define OPTION_APPEND( X )                     \
    {                                          \
        if( options.length() ) options += ";"; \
        options += ( X );                      \
    }
 
    if( po.numOptSet( "no-attribs" ) )
    {
        OPTION_APPEND( "CGM_ATTRIBS=no" );
    }
 
    if( po.numOptSet( "fatal_curves" ) )
    {
        OPTION_APPEND( "FATAL_ON_CURVES" );
    }
 
    if( po.numOptSet( "all-warnings" ) )
    {
        OPTION_APPEND( "VERBOSE_CGM_WARNINGS" );
    }
 
    // This is more roundabout than necessary, but we don't want *any* of the CGM-specific options
    //   to appear in the option string unless they were explicitly requested
    double tol;
    static const int tol_prec = 12;
    if( po.getOpt( "ftol", &tol ) )
    {
        std::stringstream s;
        s << "FACET_DISTANCE_TOLERANCE=" << std::setprecision( tol_prec ) << tol;
        OPTION_APPEND( s.str() );
    }
 
    if( po.getOpt( "ltol", &tol ) )
    {
        std::stringstream s;
        s << "MAX_FACET_EDGE_LENGTH=" << std::setprecision( tol_prec ) << tol;
        OPTION_APPEND( s.str() );
    }
 
    int atol;
    if( po.getOpt( "atol", &atol ) )
    {
        std::stringstream s;
        s << "FACET_NORMAL_TOLERANCE=" << atol;
        OPTION_APPEND( s.str() );
    }
 
#undef OPTION_APPEND
 
    /* Load main input file */
    if( verbose )
    {
        std::cout << "Loading file " << input_file << std::endl;
        if( options.length() ) std::cout << "Option string: " << options << std::endl;
    }
 
    EntityHandle input_file_set;
    ErrorCode ret;
    Core mbi;
 
    ret = mbi.create_meshset( 0, input_file_set );
    CHECKERR( mbi, ret );
 
    ret = mbi.load_file( input_file.c_str(), &input_file_set, options.c_str() );
    if( ret == MB_UNHANDLED_OPTION )
    {
        std::cerr << "Warning: unhandled option while loading input_file, will proceed anyway" << std::endl;
    }
    else
    {
        CHECKERR( mbi, ret );
    }
 
    /* Iterate through any -m alternate mesh files and replace surfaces */
 
    std::vector< std::string > m_list;
    po.getOptAllArgs( ",m", m_list );
 
    if( m_list.size() > 0 )
    {
 
        if( obb_task )
        {
            std::cerr << "Warning: using obb features in conjunction with -m may not work correctly!" << std::endl;
        }
 
        // Create tags
        Tag dimTag, idTag, senseTag;
        ret = mbi.tag_get_handle( GEOM_DIMENSION_TAG_NAME, 1, MB_TYPE_INTEGER, dimTag, MB_TAG_SPARSE | MB_TAG_CREAT );
        CHECKERR( mbi, ret );
 
        idTag = mbi.globalId_tag();
 
        ret = mbi.tag_get_handle( "GEOM_SENSE_2", 2, MB_TYPE_HANDLE, senseTag, MB_TAG_SPARSE | MB_TAG_CREAT );
        CHECKERR( mbi, ret );
 
        for( std::vector< std::string >::iterator i = m_list.begin(); i != m_list.end(); ++i )
        {
            std::cout << "Loading alternate mesh file " << *i << std::endl;
 
            EntityHandle alt_file_set;
            ret = mbi.create_meshset( 0, alt_file_set );
            CHECKERR( mbi, ret );
 
            ret = mbi.load_file( ( *i ).c_str(), &alt_file_set );
            CHECKERR( mbi, ret );
 
            if( verbose ) std::cout << "Merging input surfaces..." << std::flush;
 
            ret = merge_input_surfs( &mbi, input_file_set, alt_file_set, idTag, dimTag, senseTag );
            CHECKERR( mbi, ret );
 
            if( verbose ) std::cout << "done." << std::endl;
        }
    }
 
    /* Write output file */
 
    if( !po.numOptSet( "no-outmesh" ) )
    {
        if( verbose )
        {
            std::cout << "Writing " << output_file << std::endl;
        }
        ret = mbi.write_file( output_file.c_str(), NULL, NULL, &input_file_set, 1 );
        CHECKERR( mbi, ret );
    }
 
    /* OBB statistics and visualization */
    if( obb_task )
    {
 
        if( verbose )
        {
            std::cout << "Loading data into GeomTopoTool" << std::endl;
        }
        GeomTopoTool* gtt = new GeomTopoTool( &mbi, false );
        ret               = gtt->find_geomsets();
        CHECKERR( *gtt, ret );
        ret = gtt->construct_obb_trees();
        CHECKERR( *gtt, ret );
    }
    return 0;
}

References ProgOptions::add_cancel_opt, ProgOptions::addOpt(), ProgOptions::addOptionHelpHeading(), ProgOptions::addRequiredArg(), CHECKERR, moab::GeomTopoTool::construct_obb_trees(), moab::Core::create_meshset(), ProgOptions::error(), ErrorCode, moab::GeomTopoTool::find_geomsets(), GEOM_DIMENSION_TAG_NAME, ProgOptions::getOpt(), ProgOptions::getOptAllArgs(), moab::Core::globalId_tag(), idTag, input_file, moab::Core::load_file(), MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_HANDLE, MB_TYPE_INTEGER, MB_UNHANDLED_OPTION, merge_input_surfs(), ProgOptions::numOptSet(), OPTION_APPEND, ProgOptions::parseCommandLine(), moab::Core::tag_get_handle(), verbose, and moab::Core::write_file().

merge_input_surfs()

static ErrorCode merge_input_surfs ( Interface *  mbi, const EntityHandle  old_file_set, const EntityHandle  new_file_set, const Tag &  idTag, const Tag &  dimTag, const Tag &  senseTag  )

static

Given an "old" file and a "new" file, replace the facets in any surface of the old file with facets from the new file.

Definition at line 199 of file cgm2moab.cpp.

{
    ErrorCode rval;
 
    const int two           = 2;
    const Tag tags[2]       = { dimTag, idTag };
    const void* tag_vals[2] = { &two, NULL };
 
    Range old_surfs;
    rval = mbi->get_entities_by_type_and_tag( old_file_set, MBENTITYSET, &dimTag, tag_vals, 1, old_surfs );
    if( MB_SUCCESS != rval ) return rval;
 
    int count = 0;
 
    for( Range::iterator i = old_surfs.begin(); i != old_surfs.end(); ++i )
    {
        EntityHandle old_surf = *i;
 
        int surf_id;
        rval = mbi->tag_get_data( idTag, &old_surf, 1, &surf_id );
        if( MB_SUCCESS != rval ) return rval;
 
        Range new_surf_range;
        tag_vals[1] = &surf_id;
        rval        = mbi->get_entities_by_type_and_tag( new_file_set, MBENTITYSET, tags, tag_vals, 2, new_surf_range );
        if( MB_SUCCESS != rval ) return rval;
 
        if( new_surf_range.size() != 1 )
        {
            if( new_surf_range.size() > 1 )
            {
                std::cerr << "Warning: surface " << surf_id << " has more than one representation in new file"
                          << std::endl;
            }
            continue;
        }
 
        // Now we have found a surf in new_file_set to replace an old surf
        EntityHandle new_surf = new_surf_range[0];
 
        // TODO: check for quads and convert to triangles
 
        if( verbose )
        {
            std::cout << "Surface " << surf_id << ": " << std::flush;
        }
        rval = replace_surface( mbi, old_surf, old_file_set, new_surf, senseTag );
        if( MB_SUCCESS != rval ) return rval;
        count++;
    }
 
    std::cout << "Replaced " << count << " surface" << ( count == 1 ? "." : "s." ) << std::endl;
 
    return MB_SUCCESS;
}

References moab::Range::begin(), moab::Range::end(), ErrorCode, moab::Interface::get_entities_by_type_and_tag(), idTag, MB_SUCCESS, MBENTITYSET, replace_surface(), moab::Range::size(), moab::Interface::tag_get_data(), and verbose.

Referenced by main().

replace_surface()

static ErrorCode replace_surface ( Interface *  mbi, EntityHandle  old_surf, EntityHandle  old_file_set, EntityHandle  new_surf, const Tag &  senseTag  )

static

Replace the triangles in an old surface with those in a new surface, ensuring that their surfaces senses match before the replacement

Definition at line 98 of file cgm2moab.cpp.

{
 
    ErrorCode rval;
 
    // Get the signed volume for each surface representation. If a volume comes
    // back as zero, it's probably because a planar surface passes through the
    // origin.  In that case, try applying random offsets until reasonable
    // values are returned.
 
    CartVect offset;             // start with no offset
    const double min_vol = 0.1;  // try again if abs(vol) < this value
 
    double old_vol = 0, new_vol = 0;
 
    bool success     = false;
    int num_attempts = 100;
 
    while( num_attempts-- > 0 )
    {
 
        rval = get_signed_volume( mbi, old_surf, offset, old_vol );
        if( MB_SUCCESS != rval ) return rval;
 
        rval = get_signed_volume( mbi, new_surf, offset, new_vol );
        if( MB_SUCCESS != rval ) return rval;
 
        if( std::fabs( old_vol ) >= min_vol && std::fabs( new_vol ) >= min_vol )
        {
            success = true;
            break;
        }
 
        // haven't succeeded yet: randomize the offset vector
        const int max_random = 10;
        for( int i = 0; i < 3; ++i )
        {
            offset[i] = std::rand() % max_random;
        }
    }
 
    if( !success )
    {
        std::cerr << "Error: could not calculate a surface volume" << std::endl;
        return MB_FAILURE;
    }
 
    // If the sign is different, reverse the old surf senses so that both
    // representations have the same signed volume.
    if( ( old_vol < 0 && new_vol > 0 ) || ( old_vol > 0 && new_vol < 0 ) )
    {
 
        EntityHandle old_surf_volumes[2];
        rval = mbi->tag_get_data( senseTag, &old_surf, 1, old_surf_volumes );
        if( MB_SUCCESS != rval ) return rval;
 
        std::swap( old_surf_volumes[0], old_surf_volumes[1] );
 
        rval = mbi->tag_set_data( senseTag, &old_surf, 1, old_surf_volumes );
        if( MB_SUCCESS != rval ) return rval;
    }
 
    int num_old_tris, num_new_tris;
 
    // Remove the tris from the old surf. Also remove them from the
    // old_file_set because it is not TRACKING.
    Range old_tris;
    rval = mbi->get_entities_by_type( old_surf, MBTRI, old_tris );
    if( MB_SUCCESS != rval ) return rval;
    num_old_tris = old_tris.size();
    rval         = mbi->remove_entities( old_surf, old_tris );
    if( MB_SUCCESS != rval ) return rval;
    rval = mbi->remove_entities( old_file_set, old_tris );
    if( MB_SUCCESS != rval ) return rval;
    rval = mbi->delete_entities( old_tris );
    if( MB_SUCCESS != rval ) return rval;
 
    // Add the new_surf's triangles to the old_surf
    Range new_tris;
    rval = mbi->get_entities_by_type( new_surf, MBTRI, new_tris );
    if( MB_SUCCESS != rval ) return rval;
    num_new_tris = new_tris.size();
    rval         = mbi->add_entities( old_surf, new_tris );
    if( MB_SUCCESS != rval ) return rval;
 
    if( verbose )
    {
        std::cout << num_old_tris << " tris -> " << num_new_tris << " tris" << std::endl;
    }
 
    return MB_SUCCESS;
}

References moab::Interface::add_entities(), moab::Interface::delete_entities(), ErrorCode, moab::Interface::get_entities_by_type(), get_signed_volume(), MB_SUCCESS, MBTRI, moab::Interface::remove_entities(), moab::Range::size(), moab::Interface::tag_get_data(), moab::Interface::tag_set_data(), and verbose.

Referenced by merge_input_surfs().

Variable Documentation

verbose

bool verbose = false

program-wide verbose output flag

Definition at line 19 of file cgm2moab.cpp.

Referenced by main(), merge_input_surfs(), and replace_surface().