WriteHDF5Parallel.cpp File Reference

#include <cstdarg>
#include <ctime>
#include <cstdlib>
#include <cstring>
#include <cassert>
#include <vector>
#include <set>
#include <map>
#include <utility>
#include <iostream>
#include <sstream>
#include <string>
#include "moab/Interface.hpp"
#include "Internals.hpp"
#include "MBTagConventions.hpp"
#include "MBParallelConventions.h"
#include "moab/ParallelComm.hpp"
#include "moab/CN.hpp"
#include "moab/Range.hpp"
#include "moab/CpuTimer.hpp"
#include "WriteHDF5Parallel.hpp"
#include <H5Tpublic.h>
#include <H5Ppublic.h>
#include <H5FDmpi.h>
#include <H5FDmpio.h>
#include "mhdf.h"
#include "IODebugTrack.hpp"
#include "moab/FileOptions.hpp"

Include dependency graph for WriteHDF5Parallel.cpp:

Go to the source code of this file.

Classes
class	moab::TagNameCompare
struct	moab::serial_tag_data
struct	moab::DatasetVals
struct	moab::elemtype

Namespaces
	moab
	Class representing axis-aligned bounding box.

Macros
#define	PP_CAT_(a, b)   a##b
#define	PP_CAT(a, b)   PP_CAT_( a, b )
#define	STATIC_ASSERT(Condition)
#define	MPI_FAILURE_MSG(A)    "MPI Failure at " __FILE__ ":%d : (Code %d) %s\n", __LINE__, (int)( A ), mpi_err_str( ( A ) )
#define	CHECK_MPI(A)
#define	MB_FAILURE_MSG(A)   "MOAB_Failure at " __FILE__ ":%d : %s (%d)\n", __LINE__, ErrorCodeStr[( A )], (int)( A )
#define	CHECK_MB(A)
#define	HDF_FAILURE_MSG(A)   "MHDF Failure at " __FILE__ ":%d : %s\n", __LINE__, mhdf_message( &( A ) )
#define	CHECK_HDF(A)
#define	CHECK_HDFN(A)
#define	VALGRIND_CHECK_MEM_IS_DEFINED(a, b)   ( (void)0 )
#define	VALGRIND_CHECK_MEM_IS_ADDRESSABLE(a, b)   ( (void)0 )
#define	VALGRIND_MAKE_MEM_UNDEFINED(a, b)   ( (void)0 )
#define	START_SERIAL
#define	END_SERIAL
#define	debug_barrier()   debug_barrier_line( __LINE__ )

Functions
	moab::STATIC_ASSERT (sizeof(unsigned long) >=sizeof(EntityHandle))
static ErrorCode	moab::error (ErrorCode rval)
const char *	moab::mpi_err_str (int errorcode)
template<typename T >
void	moab::VALGRIND_MAKE_VEC_UNDEFINED (std::vector< T > &)
static int	moab::my_Gatherv (void *sendbuf, int sendcount, MPI_Datatype sendtype, std::vector< unsigned char > &recvbuf, std::vector< int > &recvcounts, int root, MPI_Comm comm)
static void	moab::print_type_sets (Interface *iFace, DebugOutput *str, Range &sets)
static void	moab::set_bit (int position, unsigned char *bytes)
static bool	moab::get_bit (int position, const unsigned char *bytes)
	moab::STATIC_ASSERT ((sizeof(DatasetVals)==3 *sizeof(long)))
template<typename TYPE >
static void	moab::convert_to_ranged_ids (const TYPE *buffer, size_t len, std::vector< WriteHDF5::wid_t > &result)
static void	moab::merge_ranged_ids (const unsigned long *range_list, size_t len, std::vector< WriteHDF5::wid_t > &result)
static void	moab::merge_vector_ids (const unsigned long *list, size_t len, std::vector< WriteHDF5::wid_t > &result)

Variables
const unsigned	moab::SSVB = 3

Macro Definition Documentation

CHECK_HDF

#define CHECK_HDF

(

A

)

Value:

 do \
 { \
 if( mhdf_isError( &( A ) ) ) \
 { \
 MB_SET_ERR_CONT( "MHDF Failure : " << mhdf_message( &( A ) ) ); \
 dbgOut.printf( 1, HDF_FAILURE_MSG( ( A ) ) ); \
 return error( MB_FAILURE ); \
 } \
 } while( false )

Definition at line 118 of file WriteHDF5Parallel.cpp.

CHECK_HDFN

#define CHECK_HDFN

(

A

)

Value:

 do \
 { \
 if( mhdf_isError( &( A ) ) ) \
 { \
 MB_SET_ERR_CONT( "MHDF Failure : " << mhdf_message( &( A ) ) ); \
 return error( MB_FAILURE ); \
 } \
 } while( false )

Definition at line 129 of file WriteHDF5Parallel.cpp.

CHECK_MB

#define CHECK_MB

(

A

)

Value:

 do \
 { \
 if( MB_SUCCESS != ( A ) ) \
 { \
 MB_SET_ERR_CONT( "MOAB Failure : " << ErrorCodeStr[( A )] ); \
 dbgOut.printf( 1, MB_FAILURE_MSG( ( A ) ) ); \
 return error( A ); \
 } \
 } while( false )

Definition at line 105 of file WriteHDF5Parallel.cpp.

CHECK_MPI

#define CHECK_MPI

(

A

)

Value:

 do \
 { \
 if( MPI_SUCCESS != ( A ) ) \
 { \
 MB_SET_ERR_CONT( "MPI Failure : (Code " << (int)( A ) << ") " << mpi_err_str( ( A ) ) ); \
 dbgOut.printf( 1, MPI_FAILURE_MSG( ( A ) ) ); \
 return error( MB_FAILURE ); \
 } \
 } while( false )

Definition at line 92 of file WriteHDF5Parallel.cpp.

debug_barrier

#define debug_barrier

(

)

debug_barrier_line( __LINE__ )

Definition at line 261 of file WriteHDF5Parallel.cpp.

END_SERIAL

#define END_SERIAL

Value:

 } \
 MPI_Barrier( myPcomm->proc_config().proc_comm() )

Definition at line 176 of file WriteHDF5Parallel.cpp.

HDF_FAILURE_MSG

#define HDF_FAILURE_MSG

(

A

)

"MHDF Failure at " __FILE__ ":%d : %s\n", __LINE__, mhdf_message( &( A ) )

Definition at line 116 of file WriteHDF5Parallel.cpp.

MB_FAILURE_MSG

#define MB_FAILURE_MSG

(

A

)

"MOAB_Failure at " __FILE__ ":%d : %s (%d)\n", __LINE__, ErrorCodeStr[( A )], (int)( A )

Definition at line 103 of file WriteHDF5Parallel.cpp.

MPI_FAILURE_MSG

#define MPI_FAILURE_MSG

(

A

)

"MPI Failure at " __FILE__ ":%d : (Code %d) %s\n", __LINE__, (int)( A ), mpi_err_str( ( A ) )

Definition at line 89 of file WriteHDF5Parallel.cpp.

PP_CAT

#define PP_CAT	(		a,
			b
	)		PP_CAT_( a, b )

Definition at line 55 of file WriteHDF5Parallel.cpp.

PP_CAT_

#define PP_CAT_	(		a,
			b
	)		a##b

Definition at line 54 of file WriteHDF5Parallel.cpp.

START_SERIAL

#define START_SERIAL

Value:

 for( unsigned _x = 0; _x < myPcomm->proc_config().proc_size(); ++_x ) \
 { \
 MPI_Barrier( myPcomm->proc_config().proc_comm() ); \
 if( _x != myPcomm->proc_config().proc_rank() ) continue

Definition at line 171 of file WriteHDF5Parallel.cpp.

STATIC_ASSERT

#define STATIC_ASSERT

(

Condition

)

Value:

 enum \
 { \
 PP_CAT( dummy, __LINE__ ) = sizeof( ::STATIC_ASSERTION< (bool)( Condition ) > ) \
 }

Definition at line 56 of file WriteHDF5Parallel.cpp.

VALGRIND_CHECK_MEM_IS_ADDRESSABLE

#define VALGRIND_CHECK_MEM_IS_ADDRESSABLE	(		a,
			b
	)		( (void)0 )

Definition at line 156 of file WriteHDF5Parallel.cpp.

VALGRIND_CHECK_MEM_IS_DEFINED

#define VALGRIND_CHECK_MEM_IS_DEFINED	(		a,
			b
	)		( (void)0 )

Definition at line 153 of file WriteHDF5Parallel.cpp.

VALGRIND_MAKE_MEM_UNDEFINED

#define VALGRIND_MAKE_MEM_UNDEFINED	(		a,
			b
	)		( (void)0 )

Definition at line 159 of file WriteHDF5Parallel.cpp.