WriteHDF5Parallel.hpp

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#ifndef WRITE_HDF5_PARALLEL_HPP
#define WRITE_HDF5_PARALLEL_HPP
 
#include "WriteHDF5.hpp"
#include <H5Spublic.h>
#include <map>
 
namespace moab
{
 
struct RemoteSetData;
class ParallelComm;
class IODebugTrack;
 
/**
 * \brief Write MOAB HDF5 file in parallel.
 * \author Jason Kraftcheck
 * \data   22 July 2004
 */
class WriteHDF5Parallel : public WriteHDF5
{
  public:
    static WriterIface* factory( Interface* );
 
    /** Consturctor
     */
    WriteHDF5Parallel( Interface* iface );
 
    virtual ~WriteHDF5Parallel();
 
  protected:
    virtual void debug_barrier_line( int lineno );
 
    virtual void print_times( const double* times ) const;
 
    //! Called by normal (non-parallel) writer.  Sets up
    //! necessary data for parallel write.
    virtual ErrorCode parallel_create_file( const char* filename,
                                            bool overwrite,
                                            const std::vector< std::string >& qa_records,
                                            const FileOptions& opts,
                                            const Tag* user_tag_list = 0,
                                            int user_tag_count       = 0,
                                            int dimension            = 3,
                                            double* times            = 0 );
 
    //! Figure out which mesh local mesh is duplicated on
    //! remote processors and which processor will write
    //! that mesh.
    //!\param non_local_ents Output list of entities that are not to
    //!                  be written by this processor but are
    //!                  referenced by other entities that are
    //!                  to be written.
    ErrorCode gather_interface_meshes( Range& non_local_ents );
 
    //! For entities that will be written by another
    //! processor but are referenced by entities on this
    //! processor, get the file Ids that will be assigned
    //! to those so they can be referenced by
    //! entities to be written on this processor.
    //!\param non_local_ents List of entities that are not to
    //!                  be written by this processor but are
    //!                  referenced by other entities that are
    //!                  to be written.
    ErrorCode exchange_file_ids( const Range& non_local_ents );
 
    //! Get remote ids for shared sets
    ErrorCode communicate_shared_set_ids( const Range& owned, const Range& remote );
 
    //! Pack set data for communication.
    //!
    //! If set_data_length is insufficient for the set data,
    //! the length entries at indices 1, 2, and 3 of set_data
    //! will be set with the necessary lengths, but no data will
    //! be written to set_data beyond that.
    ErrorCode pack_set( Range::const_iterator set, unsigned long* set_data, size_t set_data_length );
 
    //! Unpack set data from communication
    ErrorCode unpack_set( EntityHandle set, const unsigned long* set_data, size_t set_data_length );
 
    //! Communicate set contents between processors such that each
    //! owner knows the contents, parents, & child lists from all
    //! processors that have a copy of the set.
    ErrorCode communicate_shared_set_data( const Range& owned, const Range& remote );
 
    //! Create the node table in the file.
    ErrorCode create_node_table( int dimension );
 
    //! Communicate with other processors to negotiate
    //! the types of elements that will be written
    //! (the union of the types defined on each proc.)
    ErrorCode negotiate_type_list();
 
    //! Create tables to hold element connectivity
    ErrorCode create_element_tables();
 
    //! Create tables to hold element adjacencies.
    ErrorCode create_adjacency_tables();
 
    //! Create tables for mesh sets
    ErrorCode create_meshset_tables( double* times );
 
    //! Write tag descriptions and create tables to hold tag data.
    ErrorCode create_tag_tables();
 
    //! Remove any remote mesh entities from the passed range.
    void remove_remote_entities( EntityHandle relative, Range& range );
    void remove_remote_entities( EntityHandle relative, std::vector< EntityHandle >& vect );
    void remove_remote_sets( EntityHandle relative, Range& range );
    void remove_remote_sets( EntityHandle relative, std::vector< EntityHandle >& vect );
 
    //! get any existing tags which aren't excluded and add to shared set tags
    ErrorCode get_sharedset_tags();
 
    ErrorCode append_serial_tag_data( std::vector< unsigned char >& buffer, const WriteHDF5::TagDesc& tag );
 
    //! helper function for create_tag_tables
    ErrorCode check_serial_tag_data( const std::vector< unsigned char >& buffer,
                                     std::vector< TagDesc* >* missing = 0,
                                     std::vector< TagDesc* >* newlist = 0 );
 
    /**\brief Argument ot create_dataset */
    struct DataSetCreator
    {
        virtual ErrorCode operator()( WriteHDF5* writer,
                                      long data_set_size,
                                      const ExportSet* group,
                                      long& start_id_out ) const = 0;
    };
    struct NoopDescCreator : public DataSetCreator
    {
        ErrorCode operator()( WriteHDF5*, long, const ExportSet*, long& start_id ) const
        {
            start_id = -1;
            return MB_SUCCESS;
        }
    };
 
    /**\brief Do typical communication for dataset creation
     *
     * Given the number of entities each processor intends to write,
     * do necessary communication and create dataset on root, passing
     * back misc info to each proc.
     *
     *\param creator             Functor to do actual dataset creation.  Used
     *                           only on root process.
     *\param num_datasets        The number of datasets to create.
     *\param groups              Third argument passed to DataSetCreator.
     *                           Array of length \c num_datasets pr NULL.
     *\param num_owned_entities  The number of entities this proc will write.
     *                           Array of length \c num_datasets .
     *\param offsets_out         Output: The offset in the dataset at which
     *                           this process should write.
     *                           Array of length \c num_datasets .
     *\param max_proc_ents_out   Output: The maximun number of entities that
     *                           any proc will write
     *                           Array of length \c num_datasets .
     *\param total_ents_out      Output: The size of the created dataset (sum
     *                           of counts over all procs)
     *                           Array of length \c num_datasets .
     *\param first_ids_out       Output: The first ID of the first entity in the
     *                           data set.  First ID for this proc's entities is
     *                           first_id_out+offset_out
     *                           Array of length \c num_datasets or NULL.
     */
    ErrorCode create_dataset( int num_datasets,
                              const long* num_owned_entities,
                              long* offsets_out,
                              long* max_proc_ents_out,
                              long* total_ents_out,
                              const DataSetCreator& creator = NoopDescCreator(),
                              ExportSet* groups[]           = 0,
                              wid_t* first_ids_out          = NULL );
 
    void print_shared_sets();
    void print_set_sharing_data( const Range& range, const char* label, Tag idt );
 
  private:
    //! pcomm controlling parallel nature of mesh
    ParallelComm* myPcomm;
 
    //! whether this instance allocated (and dtor should delete) the pcomm
    bool pcommAllocated;
 
    //! Operation to use to append hyperslab selections
    H5S_seloper_t hslabOp;
};
 
}  // namespace moab
 
#endif