#include "Mesquite.hpp"
#include "MsqIBase.hpp"
#include "MsqIGeom.hpp"
#include "MsqIMesh.hpp"
#include "MBiMesh.hpp"
#include "MeshImpl.hpp"
#include "moab/Core.hpp"
#include "moab/Skinner.hpp"
#include "moab/LloydSmoother.hpp"
#include "FacetModifyEngine.hpp"
#include "MsqError.hpp"
#include "InstructionQueue.hpp"
#include "PatchData.hpp"
#include "TerminationCriterion.hpp"
#include "QualityAssessor.hpp"
#include "SphericalDomain.hpp"
#include "PlanarDomain.hpp"
#include "MeshWriter.hpp"
#include "moab/ProgOptions.hpp"
#include "IdealWeightInverseMeanRatio.hpp"
#include "TMPQualityMetric.hpp"
#include "AspectRatioGammaQualityMetric.hpp"
#include "ConditionNumberQualityMetric.hpp"
#include "VertexConditionNumberQualityMetric.hpp"
#include "MultiplyQualityMetric.hpp"
#include "LPtoPTemplate.hpp"
#include "LInfTemplate.hpp"
#include "PMeanPTemplate.hpp"
#include "SteepestDescent.hpp"
#include "FeasibleNewton.hpp"
#include "QuasiNewton.hpp"
#include "ConjugateGradient.hpp"
#include "SmartLaplacianSmoother.hpp"
#include "Randomize.hpp"
#include "ReferenceMesh.hpp"
#include "RefMeshTargetCalculator.hpp"
#include "TShapeB1.hpp"
#include "TQualityMetric.hpp"
#include "IdealShapeTarget.hpp"
#include <sys/stat.h>
#include <iostream>
#include "iBase.h"

Include dependency graph for OptimizeMeshMesquite.cpp:

Macros
#define	CHECK_IGEOM(STR) if( err != iBase_SUCCESS ) return print_iGeom_error( STR, err, geom, __FILE__, __LINE__ )

#define	CHECK_IMESH(STR) if( err != iBase_SUCCESS ) return print_iMesh_error( STR, err, instance, __FILE__, __LINE__ )

Functions
static int	print_iGeom_error (const char desc, int err, iGeom_Instance geom, const char file, int line)

static int	print_iMesh_error (const char desc, int err, iMesh_Instance mesh, const char file, int line)

int	write_vtk_mesh (Mesh mesh, const char filename)

int	get_imesh_mesh (MBMesquite::Mesh *, const char file_name, int dimension)

int	get_native_mesh (MBMesquite::Mesh *, const char file_name, int dimension)

int	get_itaps_domain (MeshDomain *, const char )

int	get_mesquite_domain (MeshDomain *, const char )

int	run_global_smoother (MeshDomainAssoc &mesh, MsqError &err, double OF_value=1e-4)

int	run_local_smoother (MeshDomainAssoc &mesh, MsqError &err, double OF_value=1e-3)

int	run_local_smoother2 (MeshDomainAssoc &mesh_and_domain, MsqError &err, double OF_value=1e-3)

int	run_quality_optimizer (MeshDomainAssoc &mesh_and_domain, MsqError &err)

int	run_solution_mesh_optimizer (MeshDomainAssoc &mesh_and_domain, MsqError &err)

bool	file_exists (const std::string &name)

int	main (int argc, char *argv[])

Variables
const std::string	default_file_name = std::string( MESH_DIR ) + std::string( "/surfrandomtris-4part.h5m" )

const std::string	default_geometry_file_name = std::string( MESH_DIR ) + std::string( "/surfrandom.facet" )

std::vector< double >	solution_indicator

Macro Definition Documentation

◆ CHECK_IGEOM

#define CHECK_IGEOM ( STR ) if( err != iBase_SUCCESS ) return print_iGeom_error( STR, err, geom, __FILE__, __LINE__ )

Examples: OptimizeMeshMesquite.cpp.

Definition at line 99 of file OptimizeMeshMesquite.cpp.

◆ CHECK_IMESH

#define CHECK_IMESH ( STR ) if( err != iBase_SUCCESS ) return print_iMesh_error( STR, err, instance, __FILE__, __LINE__ )

Examples: OptimizeMeshMesquite.cpp.

Definition at line 102 of file OptimizeMeshMesquite.cpp.

Function Documentation

◆ file_exists()

bool file_exists ( const std::string & name )

Examples: OptimizeMeshMesquite.cpp.

Definition at line 132 of file OptimizeMeshMesquite.cpp.

 {
     struct stat buffer;
     return ( stat( name.c_str(), &buffer ) == 0 );
 }

References buffer.

Referenced by main().

◆ get_imesh_mesh()

int get_imesh_mesh	(	MBMesquite::Mesh **	mesh,
		const char *	file_name,
		int	dimension
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 606 of file OptimizeMeshMesquite.cpp.

 {
     int err;
     iMesh_Instance instance = 0;
     iMesh_newMesh( NULL, &instance, &err, 0 );
     CHECK_IMESH( "Creation of mesh instance failed" );
  
     iBase_EntitySetHandle root_set;
     iMesh_getRootSet( instance, &root_set, &err );
     CHECK_IMESH( "Could not get root set" );
  
     iMesh_load( instance, root_set, file_name, 0, &err, strlen( file_name ), 0 );
     CHECK_IMESH( "Could not load mesh from file" );
  
     iBase_TagHandle fixed_tag;
     iMesh_getTagHandle( instance, "fixed", &fixed_tag, &err, strlen( "fixed" ) );
     // if (iBase_SUCCESS != err)
     {
         // get the skin vertices of those cells and mark them as fixed; we don't want to fix the
         // vertices on a part boundary, but since we exchanged a layer of ghost cells, those
         // vertices aren't on the skin locally ok to mark non-owned skin vertices too, I won't move
         // those anyway use MOAB's skinner class to find the skin
  
         // get all vertices and cells
         // make tag to specify fixed vertices, since it's input to the algorithm; use a default
         // value of non-fixed so we only need to set the fixed tag for skin vertices
         moab::Interface* mbi       = reinterpret_cast< MBiMesh* >( instance )->mbImpl;
         moab::EntityHandle currset = 0;
         moab::Tag fixed;
         int def_val = 0;
         err         = 0;
         moab::MB_CHK_SET_ERR( mbi->tag_get_handle( "fixed", 1, moab::MB_TYPE_INTEGER, fixed,
                                                    moab::MB_TAG_CREAT | moab::MB_TAG_DENSE, &def_val ),
                               "Getting tag handle failed" );
         moab::Range verts, cells, skin_verts;
         MB_CHK_SET_ERR( mbi->get_entities_by_type( currset, moab::MBVERTEX, verts ), "Querying vertices failed" );
         MB_CHK_SET_ERR( mbi->get_entities_by_dimension( currset, dimension, cells ), "Querying elements failed" );
         std::cout << "Found " << verts.size() << " vertices and " << cells.size() << " elements" << std::endl;
  
         moab::Skinner skinner( mbi );
         MB_CHK_SET_ERR( skinner.find_skin( currset, cells, true, skin_verts ),
                         "Finding the skin of the mesh failed" );  // 'true' param indicates we want
                                                                   // vertices back, not cells
  
         std::vector< int > fix_tag( skin_verts.size(), 1 );  // initialized to 1 to indicate fixed
         MB_CHK_SET_ERR( mbi->tag_set_data( fixed, skin_verts, &fix_tag[0] ), "Setting tag data failed" );
         std::cout << "Found " << skin_verts.size() << " vertices on the skin of the domain." << std::endl;
  
         // fix_tag.resize(verts.size(),0);
         // MB_CHK_SET_ERR( mbi->tag_get_data(fixed, verts, &fix_tag[0]), "Getting tag
         // data failed" );
  
         iMesh_getTagHandle( instance, "fixed", &fixed_tag, &err, strlen( "fixed" ) );
         CHECK_IMESH( "Getting tag handle (fixed) failed" );
  
         // Set some arbitrary solution indicator
         moab::Tag solindTag;
         double def_val_dbl = 0.0;
         MB_CHK_SET_ERR( mbi->tag_get_handle( "solution_indicator", 1, moab::MB_TYPE_DOUBLE, solindTag,
                                              moab::MB_TAG_CREAT | moab::MB_TAG_DENSE, &def_val_dbl ),
                         "Getting tag handle failed" );
         solution_indicator.resize( cells.size(), 0.01 );
         for( unsigned i = 0; i < cells.size() / 4; i++ )
             solution_indicator[i] = 0.1;
         for( unsigned i = cells.size() / 4; i < 2 * cells.size() / 4; i++ )
             solution_indicator[i] = 0.5;
         for( unsigned i = 2 * cells.size() / 4; i < 3 * cells.size() / 4; i++ )
             solution_indicator[i] = 0.5;
         for( unsigned i = 3 * cells.size() / 4; i < cells.size(); i++ )
             solution_indicator[i] = 0.5;
  
         MB_CHK_SET_ERR( mbi->tag_set_data( solindTag, cells, &solution_indicator[0] ), "Setting tag data failed" );
     }
  
     MsqError ierr;
     MBMesquite::MsqIMesh* imesh =
         new MBMesquite::MsqIMesh( instance, root_set, ( dimension == 3 ? iBase_REGION : iBase_FACE ), ierr,
                                   &fixed_tag );
     if( MSQ_CHKERR( ierr ) )
     {
         delete imesh;
         cerr << err << endl;
         err = iBase_FAILURE;
         CHECK_IMESH( "Creation of MsqIMesh instance failed" );
         return 0;
     }
  
     *mesh = imesh;
     return iBase_SUCCESS;
 }

References CHECK_IMESH, moab::Skinner::find_skin(), moab::Interface::get_entities_by_dimension(), moab::Interface::get_entities_by_type(), MB_CHK_SET_ERR, MB_TAG_CREAT, MB_TAG_DENSE, MB_TYPE_DOUBLE, MB_TYPE_INTEGER, MBVERTEX, moab::Range::size(), solution_indicator, moab::Interface::tag_get_handle(), and moab::Interface::tag_set_data().

Referenced by main().

◆ get_itaps_domain()

int get_itaps_domain	(	MeshDomain **	odomain,
		const char *	filename
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 712 of file OptimizeMeshMesquite.cpp.

 {
  
     if( filename == 0 || strlen( filename ) == 0 )
     {
         *odomain = new PlanarDomain( PlanarDomain::XY );
         return 0;
     }
  
     int err;
     iGeom_Instance geom;
     iGeom_newGeom( "", &geom, &err, 0 );
     CHECK_IGEOM( "ERROR: iGeom creation failed" );
  
 #ifdef MOAB_HAVE_CGM_FACET
     FacetModifyEngine::set_modify_enabled( CUBIT_TRUE );
 #endif
  
     iGeom_load( geom, filename, 0, &err, strlen( filename ), 0 );
     CHECK_IGEOM( "Cannot load the geometry" );
  
     iBase_EntitySetHandle root_set;
     iGeom_getRootSet( geom, &root_set, &err );
     CHECK_IGEOM( "getRootSet failed!" );
  
     // print out the number of entities
     std::cout << "Model contents: " << std::endl;
     const char* gtype[] = { "vertices: ", "edges: ", "faces: ", "regions: " };
     int nents[4];
     for( int i = 0; i <= 3; ++i )
     {
         iGeom_getNumOfType( geom, root_set, i, &nents[i], &err );
         CHECK_IGEOM( "Error: problem getting entities after gLoad." );
         std::cout << gtype[i] << nents[i] << std::endl;
     }
  
     iBase_EntityHandle* hd_geom_ents;
     int csize = 0, sizealloc = 0;
     if( nents[3] > 0 )
     {
         hd_geom_ents = (iBase_EntityHandle*)malloc( sizeof( iBase_EntityHandle ) * nents[2] );
         csize        = nents[2];
         iGeom_getEntities( geom, root_set, 2, &hd_geom_ents, &csize, &sizealloc, &err );
     }
     else
     {
         hd_geom_ents = (iBase_EntityHandle*)malloc( sizeof( iBase_EntityHandle ) * nents[1] );
         csize        = nents[1];
         iGeom_getEntities( geom, root_set, 1, &hd_geom_ents, &csize, &sizealloc, &err );
     }
     CHECK_IGEOM( "ERROR: Could not get entities" );
  
     *odomain = new MsqIGeom( geom, hd_geom_ents[0] );
     return iBase_SUCCESS;
 }

References CHECK_IGEOM.

Referenced by main().

◆ get_mesquite_domain()

int get_mesquite_domain	(	MeshDomain **	,
		const char *
	)

Examples: OptimizeMeshMesquite.cpp.

◆ get_native_mesh()

int get_native_mesh	(	MBMesquite::Mesh **	mesh,
		const char *	file_name,
		int	dimension
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 697 of file OptimizeMeshMesquite.cpp.

 {
     MsqError err;
     MBMesquite::MeshImpl* imesh = new MBMesquite::MeshImpl();
     imesh->read_vtk( file_name, err );
     if( err )
     {
         cerr << err << endl;
         exit( 3 );
     }
     *mesh = imesh;
  
     return iBase_SUCCESS;
 }

Referenced by main().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 138 of file OptimizeMeshMesquite.cpp.

 {
     MBMesquite::MsqPrintError err( cout );
     // command line arguments
     std::string file_name, geometry_file_name;
     bool use_native = false;
     int dimension   = 2;
  
 #ifdef MOAB_HAVE_MPI
 //  MPI_Init(&argc, &argv);
 #endif
     ProgOptions opts;
  
     opts.addOpt< void >( std::string( "native,N" ), std::string( "Use native representation (default=false)" ),
                          &use_native );
     opts.addOpt< int >( std::string( "dim,d" ), std::string( "Topological dimension of the mesh (default=2)" ),
                         &dimension );
     opts.addOpt< std::string >( std::string( "input_geo,i" ),
                                 std::string( "Input file name for the geometry (pattern=*.stl, *.facet)" ),
                                 &geometry_file_name );
     opts.addOpt< std::string >( std::string( "input_mesh,m" ),
                                 std::string( "Input file name for the mesh (pattern=*.vtk, *.h5m)" ), &file_name );
  
     opts.parseCommandLine( argc, argv );
  
     if( !geometry_file_name.length() )
     {
         file_name          = default_file_name;
         geometry_file_name = default_geometry_file_name;
         cout << "No file specified: Using defaults.\n";
     }
     cout << "\t Mesh filename = " << file_name << endl;
     cout << "\t Geometry filename = " << geometry_file_name << endl;
  
     // Vector3D pnt(0,0,0);
     // Vector3D s_norm(0,0,1);
     // PlanarDomain plane(s_norm, pnt);
  
     //  PlanarDomain plane( PlanarDomain::XY );
     MeshDomain* plane;
     int ierr;
     if( !file_exists( geometry_file_name ) ) geometry_file_name = "";
     ierr = get_itaps_domain( &plane, geometry_file_name.c_str() );  // MB_CHK_ERR(ierr);
  
     // Try running a global smoother on the mesh
     Mesh* mesh = 0;
     if( use_native )
     {
         ierr = get_native_mesh( &mesh, file_name.c_str(), dimension );  // MB_CHK_ERR(ierr);
     }
     else
     {
         ierr = get_imesh_mesh( &mesh, file_name.c_str(), dimension );  // MB_CHK_ERR(ierr);
     }
  
     if( !mesh )
     {
         std::cerr << "Failed to load input file.  Aborting." << std::endl;
         return 1;
     }
  
     MeshDomainAssoc mesh_and_domain( mesh, plane );
  
     // ierr = write_vtk_mesh( mesh, "original.vtk");MB_CHK_ERR(ierr);
     // cout << "Wrote \"original.vtk\"" << endl;
  
     // run_global_smoother( mesh_and_domain, err );
     // if (err) return 1;
  
     // Try running a local smoother on the mesh
     //  Mesh* meshl=0;
     //  if(use_native)
     //    ierr = get_native_mesh(&meshl, file_name.c_str(), dimension);
     //  else
     //    ierr = get_imesh_mesh(&meshl, file_name.c_str(), dimension);
     //  if (!mesh || ierr) {
     //    std::cerr << "Failed to load input file.  Aborting." << std::endl;
     //    return 1;
     //  }
  
     //  MeshDomainAssoc mesh_and_domain_local(meshl, plane);
  
     // run_solution_mesh_optimizer( mesh_and_domain, err );
     // if (err) return 1;
  
     run_local_smoother( mesh_and_domain, err, 1e-4 );  // MB_CHK_ERR(err);
     if( err ) return 1;
  
     double reps = 5e-2;
     for( int iter = 0; iter < 5; iter++ )
     {
  
         if( !( iter % 2 ) )
         {
             run_local_smoother2( mesh_and_domain, err,
                                  reps * 10 );  // CHECK_IMESH("local smoother2 failed");
             if( err ) return 1;
         }
  
         // run_global_smoother( mesh_and_domain, err, reps );MB_CHK_ERR(ierr);
  
         run_solution_mesh_optimizer( mesh_and_domain,
                                      err );  // CHECK_IMESH("solution mesh optimizer failed");
         if( err ) return 1;
  
         reps *= 0.01;
     }
  
     run_local_smoother2( mesh_and_domain, err, 1e-4 );  // CHECK_IMESH("local smoother2 failed");
     if( err ) return 1;
  
     // run_quality_optimizer( mesh_and_domain, err );MB_CHK_ERR(ierr);
  
     // run_local_smoother( mesh_and_domain, err );MB_CHK_ERR(ierr);
  
     // Delete MOAB instance
     delete mesh;
     delete plane;
  
 #ifdef MOAB_HAVE_MPI
     // MPI_Finalize();
 #endif
  
     return 0;
 }

References ProgOptions::addOpt(), default_file_name, default_geometry_file_name, file_exists(), get_imesh_mesh(), get_itaps_domain(), get_native_mesh(), ProgOptions::parseCommandLine(), run_local_smoother(), run_local_smoother2(), and run_solution_mesh_optimizer().

◆ print_iGeom_error()

static int print_iGeom_error	(	const char *	desc,
		int	err,
		iGeom_Instance	geom,
		const char *	file,
		int	line
	)

static

Examples: OptimizeMeshMesquite.cpp.

Definition at line 71 of file OptimizeMeshMesquite.cpp.

 {
     char buffer[1024];
     iGeom_getDescription( geom, buffer, sizeof( buffer ) );
     buffer[sizeof( buffer ) - 1] = '\0';
  
     std::cerr << "ERROR: " << desc << std::endl
               << "  Error code: " << err << std::endl
               << "  Error desc: " << buffer << std::endl
               << "  At        : " << file << ':' << line << std::endl;
  
     return -1;  // must always return false or CHECK macro will break
 }

References buffer.

◆ print_iMesh_error()

static int print_iMesh_error	(	const char *	desc,
		int	err,
		iMesh_Instance	mesh,
		const char *	file,
		int	line
	)

static

Examples: OptimizeMeshMesquite.cpp.

Definition at line 85 of file OptimizeMeshMesquite.cpp.

 {
     char buffer[1024];
     iMesh_getDescription( mesh, buffer, sizeof( buffer ) );
     buffer[sizeof( buffer ) - 1] = '\0';
  
     std::cerr << "ERROR: " << desc << std::endl
               << "  Error code: " << err << std::endl
               << "  Error desc: " << buffer << std::endl
               << "  At        : " << file << ':' << line << std::endl;
  
     return -1;  // must always return false or CHECK macro will break
 }

References buffer.

◆ run_global_smoother()

int run_global_smoother	(	MeshDomainAssoc &	mesh,
		MsqError &	err,
		double	OF_value = `1e-4`
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 264 of file OptimizeMeshMesquite.cpp.

 {
     // double OF_value = 1e-6;
  
     Mesh* mesh         = mesh_and_domain.get_mesh();
     MeshDomain* domain = mesh_and_domain.get_domain();
  
     // creates an intruction queue
     InstructionQueue queue1;
  
     // creates a mean ratio quality metric ...
     IdealWeightInverseMeanRatio* mean_ratio = new IdealWeightInverseMeanRatio( err );
     // ConditionNumberQualityMetric* mean_ratio = new ConditionNumberQualityMetric();
     // TMPQualityMetric* mean_ratio = new TMPQualityMetric();
  
     // VertexConditionNumberQualityMetric* mean_ratio = new VertexConditionNumberQualityMetric();
     if( err ) return 1;
     mean_ratio->set_averaging_method( QualityMetric::RMS, err );
     if( err ) return 1;
  
     // ... and builds an objective function with it
     LPtoPTemplate* obj_func = new LPtoPTemplate( mean_ratio, 1, err );
     // LInfTemplate* obj_func = new LInfTemplate(mean_ratio);
     if( err ) return 1;
  
     // creates the feas newt optimization procedures
     // ConjugateGradient* pass1 = new ConjugateGradient( obj_func, err );
     // FeasibleNewton* pass1 = new FeasibleNewton( obj_func );
     SteepestDescent* pass1 = new SteepestDescent( obj_func );
     pass1->use_element_on_vertex_patch();
     pass1->do_block_coordinate_descent_optimization();
     pass1->use_global_patch();
     if( err ) return 1;
  
     QualityAssessor stop_qa( mean_ratio );
  
     // **************Set stopping criterion****************
     TerminationCriterion tc_inner;
     tc_inner.add_absolute_vertex_movement( OF_value );
     if( err ) return 1;
     TerminationCriterion tc_outer;
     tc_inner.add_iteration_limit( 10 );
     tc_outer.add_iteration_limit( 5 );
     tc_outer.set_debug_output_level( 3 );
     tc_inner.set_debug_output_level( 3 );
     pass1->set_inner_termination_criterion( &tc_inner );
     pass1->set_outer_termination_criterion( &tc_outer );
  
     queue1.add_quality_assessor( &stop_qa, err );
     if( err ) return 1;
  
     // adds 1 pass of pass1 to mesh_set1
     queue1.set_master_quality_improver( pass1, err );
     if( err ) return 1;
  
     queue1.add_quality_assessor( &stop_qa, err );
     if( err ) return 1;
  
     // launches optimization on mesh_set
     if( domain )
     {
         queue1.run_instructions( &mesh_and_domain, err );
     }
     else
     {
         queue1.run_instructions( mesh, err );
     }
     if( err ) return 1;
  
     // Construct a MeshTSTT from the file
     int ierr = write_vtk_mesh( mesh, "feasible-newton-result.vtk" );
     if( ierr ) return 1;
     // MeshWriter::write_vtk(mesh, "feasible-newton-result.vtk", err);
     // if (err) return 1;
     cout << "Wrote \"feasible-newton-result.vtk\"" << endl;
  
     // print_timing_diagnostics( cout );
     return 0;
 }

References write_vtk_mesh().

◆ run_local_smoother()

int run_local_smoother	(	MeshDomainAssoc &	mesh,
		MsqError &	err,
		double	OF_value = `1e-3`
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 355 of file OptimizeMeshMesquite.cpp.

 {
     Mesh* mesh = mesh_and_domain.get_mesh();
     moab::Interface* mbi =
         reinterpret_cast< MBiMesh* >( dynamic_cast< MsqIMesh* >( mesh )->get_imesh_instance() )->mbImpl;
  
     moab::Tag fixed;
     MB_CHK_SET_ERR( mbi->tag_get_handle( "fixed", 1, moab::MB_TYPE_INTEGER, fixed ), "Getting tag handle failed" );
     moab::Range cells;
     MB_CHK_SET_ERR( mbi->get_entities_by_dimension( 0, 2, cells ), "Querying elements failed" );
  
     moab::LloydSmoother lloyd( mbi, 0, cells, 0, 0 /*fixed*/ );
  
     lloyd.perform_smooth();
  
     // run_local_smoother2(mesh_and_domain, err, OF_value);
  
     // Construct a MeshTSTT from the file
     int ierr = write_vtk_mesh( mesh, "smart-laplacian-result.vtk" );
     if( ierr ) return 1;
     // MeshWriter::write_vtk(mesh, "smart-laplacian-result.vtk", err);
     // if (err) return 1;
     cout << "Wrote \"smart-laplacian-result.vtk\"" << endl;
     return 0;
 }

References moab::Interface::get_entities_by_dimension(), MB_CHK_SET_ERR, MB_TYPE_INTEGER, moab::LloydSmoother::perform_smooth(), moab::Interface::tag_get_handle(), and write_vtk_mesh().

Referenced by main().

◆ run_local_smoother2()

int run_local_smoother2	(	MeshDomainAssoc &	mesh_and_domain,
		MsqError &	err,
		double	OF_value = `1e-3`
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 381 of file OptimizeMeshMesquite.cpp.

 {
     // double OF_value = 1e-5;
  
     Mesh* mesh         = mesh_and_domain.get_mesh();
     MeshDomain* domain = mesh_and_domain.get_domain();
  
     // creates an intruction queue
     InstructionQueue queue1;
  
     // creates a mean ratio quality metric ...
     // IdealWeightInverseMeanRatio* mean_ratio = new IdealWeightInverseMeanRatio(err);
     ConditionNumberQualityMetric* mean_ratio = new ConditionNumberQualityMetric();
     // VertexConditionNumberQualityMetric* mean_ratio = new VertexConditionNumberQualityMetric();
     if( err ) return 1;
     //  mean_ratio->set_gradient_type(QualityMetric::NUMERICAL_GRADIENT);
     //   mean_ratio->set_hessian_type(QualityMetric::NUMERICAL_HESSIAN);
     mean_ratio->set_averaging_method( QualityMetric::RMS, err );
     if( err ) return 1;
  
     // ... and builds an objective function with it
     LPtoPTemplate* obj_func = new LPtoPTemplate( mean_ratio, 1, err );
     if( err ) return 1;
  
     if( false )
     {
         InstructionQueue qtmp;
         Randomize rand( -0.005 );
         TerminationCriterion sc_rand;
         sc_rand.add_iteration_limit( 2 );
         rand.set_outer_termination_criterion( &sc_rand );
         qtmp.set_master_quality_improver( &rand, err );
         if( err ) return 1;
         if( domain )
         {
             qtmp.run_instructions( &mesh_and_domain, err );
         }
         else
         {
             qtmp.run_instructions( mesh, err );
         }
         if( err ) return 1;
     }
  
     // creates the smart laplacian optimization procedures
     SmartLaplacianSmoother* pass1 = new SmartLaplacianSmoother( obj_func );
     // SteepestDescent* pass1 = new SteepestDescent( obj_func );
  
     QualityAssessor stop_qa( mean_ratio );
  
     // **************Set stopping criterion****************
     TerminationCriterion tc_inner;
     tc_inner.add_absolute_vertex_movement( OF_value );
     TerminationCriterion tc_outer;
     tc_outer.add_iteration_limit( 10 );
     pass1->set_inner_termination_criterion( &tc_inner );
     pass1->set_outer_termination_criterion( &tc_outer );
  
     queue1.add_quality_assessor( &stop_qa, err );
     if( err ) return 1;
  
     // adds 1 pass of pass1 to mesh_set
     queue1.set_master_quality_improver( pass1, err );
     if( err ) return 1;
  
     queue1.add_quality_assessor( &stop_qa, err );
     if( err ) return 1;
  
     // launches optimization on mesh_set
     if( domain )
     {
         queue1.run_instructions( &mesh_and_domain, err );
     }
     else
     {
         queue1.run_instructions( mesh, err );
     }
     if( err ) return 1;
  
     // Construct a MeshTSTT from the file
     int ierr = write_vtk_mesh( mesh, "smart-laplacian-result.vtk" );
     if( ierr ) return 1;
     // MeshWriter::write_vtk(mesh, "smart-laplacian-result.vtk", err);
     // if (err) return 1;
     cout << "Wrote \"smart-laplacian-result.vtk\"" << endl;
  
     // print_timing_diagnostics( cout );
     return 0;
 }

References write_vtk_mesh().

Referenced by main().

◆ run_quality_optimizer()

int run_quality_optimizer	(	MeshDomainAssoc &	mesh_and_domain,
		MsqError &	err
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 471 of file OptimizeMeshMesquite.cpp.

 {
     Mesh* mesh         = mesh_and_domain.get_mesh();
     MeshDomain* domain = mesh_and_domain.get_domain();
  
     // creates an intruction queue
     InstructionQueue q;
  
     // do optimization
     const double eps = 0.01;
     IdealShapeTarget w;
     TShapeB1 mu;
     TQualityMetric metric( &w, &mu );
     PMeanPTemplate func( 1.0, &metric );
  
     SteepestDescent solver( &func );
     solver.use_element_on_vertex_patch();
     solver.do_jacobi_optimization();
  
     TerminationCriterion inner, outer;
     inner.add_absolute_vertex_movement( 0.5 * eps );
     outer.add_absolute_vertex_movement( 0.5 * eps );
  
     QualityAssessor qa( &metric );
  
     q.add_quality_assessor( &qa, err );
     if( err ) return 1;
     q.set_master_quality_improver( &solver, err );
     if( err ) return 1;
     q.add_quality_assessor( &qa, err );
     if( err ) return 1;
  
     // launches optimization on mesh_set
     if( domain )
     {
         q.run_instructions( &mesh_and_domain, err );
     }
     else
     {
         q.run_instructions( mesh, err );
     }
     if( err ) return 1;
  
     // Construct a MeshTSTT from the file
     int ierr = write_vtk_mesh( mesh, "ideal-shape-result.vtk" );
     if( ierr ) return 1;
     // MeshWriter::write_vtk(mesh, "ideal-shape-result.vtk", err);
     // if (err) return 1;
     cout << "Wrote \"ideal-shape-result.vtk\"" << endl;
  
     print_timing_diagnostics( cout );
     return 0;
 }

References inner(), and write_vtk_mesh().

◆ run_solution_mesh_optimizer()

int run_solution_mesh_optimizer	(	MeshDomainAssoc &	mesh_and_domain,
		MsqError &	err
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 525 of file OptimizeMeshMesquite.cpp.

 {
     double OF_value = 0.01;
  
     Mesh* mesh         = mesh_and_domain.get_mesh();
     MeshDomain* domain = mesh_and_domain.get_domain();
  
     // creates an intruction queue
     InstructionQueue queue1;
  
     // creates a mean ratio quality metric ...
     // IdealWeightInverseMeanRatio* mean_ratio = new IdealWeightInverseMeanRatio(err);
     ConditionNumberQualityMetric* mean_ratio = new ConditionNumberQualityMetric();
     // VertexConditionNumberQualityMetric* mean_ratio = new VertexConditionNumberQualityMetric();
     // AspectRatioGammaQualityMetric* mean_ratio = new AspectRatioGammaQualityMetric();
  
     // ElementSolIndQM* solindqm = new ElementSolIndQM(solution_indicator);
     // MultiplyQualityMetric* mean_ratio = new MultiplyQualityMetric(new
     // VertexConditionNumberQualityMetric(), solindqm, err);
     // ElementSolIndQM* mean_ratio = solindqm;
  
     // LocalSizeQualityMetric* mean_ratio = new LocalSizeQualityMetric();
  
     mean_ratio->set_averaging_method( QualityMetric::SUM_OF_RATIOS_SQUARED, err );
     if( err ) return 1;
  
     // ... and builds an objective function with it
     LPtoPTemplate* obj_func = new LPtoPTemplate( mean_ratio, 1, err );
     if( err ) return 1;
  
     // // creates the feas newt optimization procedures
     ConjugateGradient* pass1 = new ConjugateGradient( obj_func, err );
     // QuasiNewton* pass1 = new QuasiNewton( obj_func );
     // FeasibleNewton* pass1 = new FeasibleNewton( obj_func );
     pass1->use_global_patch();
  
     QualityAssessor stop_qa( mean_ratio );
  
     // **************Set stopping criterion****************
     TerminationCriterion tc_inner;
     tc_inner.add_absolute_vertex_movement( OF_value );
     if( err ) return 1;
     TerminationCriterion tc_outer;
     tc_inner.add_iteration_limit( 20 );
     tc_outer.add_iteration_limit( 5 );
     pass1->set_inner_termination_criterion( &tc_inner );
     pass1->set_outer_termination_criterion( &tc_outer );
     pass1->set_debugging_level( 3 );
  
     queue1.add_quality_assessor( &stop_qa, err );
     if( err ) return 1;
  
     // adds 1 pass of pass1 to mesh_set1
     queue1.set_master_quality_improver( pass1, err );
     if( err ) return 1;
  
     queue1.add_quality_assessor( &stop_qa, err );
     if( err ) return 1;
  
     // launches optimization on mesh_set
     if( domain )
     {
         queue1.run_instructions( &mesh_and_domain, err );
     }
     else
     {
         queue1.run_instructions( mesh, err );
     }
     if( err ) return 1;
  
     // Construct a MeshTSTT from the file
     int ierr = write_vtk_mesh( mesh, "solution-mesh-result.vtk" );
     if( ierr ) return 1;
     // MeshWriter::write_vtk(mesh, "solution-mesh-result.vtk", err);
     // if (err) return 1;
     cout << "Wrote \"solution-mesh-result.vtk\"" << endl;
  
     print_timing_diagnostics( cout );
     return 0;
 }

References write_vtk_mesh().

Referenced by main().

◆ write_vtk_mesh()

int write_vtk_mesh	(	Mesh *	mesh,
		const char *	filename
	)

Examples: OptimizeMeshMesquite.cpp.

Definition at line 344 of file OptimizeMeshMesquite.cpp.

 {
     moab::Interface* mbi =
         reinterpret_cast< MBiMesh* >( dynamic_cast< MsqIMesh* >( mesh )->get_imesh_instance() )->mbImpl;
  
     mbi->write_file( filename );
  
     return 0;
 }

References moab::Interface::write_file().

Referenced by run_global_smoother(), run_local_smoother(), run_local_smoother2(), run_quality_optimizer(), and run_solution_mesh_optimizer().

Variable Documentation

◆ default_file_name

const std::string default_file_name = std::string( MESH_DIR ) + std::string( "/surfrandomtris-4part.h5m" )

Examples: OptimizeMeshMesquite.cpp.

Definition at line 105 of file OptimizeMeshMesquite.cpp.

Referenced by main().

◆ default_geometry_file_name

const std::string default_geometry_file_name = std::string( MESH_DIR ) + std::string( "/surfrandom.facet" )

Examples: OptimizeMeshMesquite.cpp.

Definition at line 106 of file OptimizeMeshMesquite.cpp.

Referenced by main().

◆ solution_indicator

std::vector< double > solution_indicator

Examples: OptimizeMeshMesquite.cpp.

Definition at line 108 of file OptimizeMeshMesquite.cpp.

Referenced by get_imesh_mesh().

Macros

Functions

Variables

Macro Definition Documentation

◆ CHECK_IGEOM

◆ CHECK_IMESH

Function Documentation

◆ file_exists()

◆ get_imesh_mesh()

◆ get_itaps_domain()

◆ get_mesquite_domain()

◆ get_native_mesh()

◆ main()

◆ print_iGeom_error()

◆ print_iMesh_error()

◆ run_global_smoother()

◆ run_local_smoother()

◆ run_local_smoother2()

◆ run_quality_optimizer()

◆ run_solution_mesh_optimizer()

◆ write_vtk_mesh()

Variable Documentation

◆ default_file_name

◆ default_geometry_file_name

◆ solution_indicator