LloydSmoother.cpp

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#include "moab/LloydSmoother.hpp"
#include "moab/Skinner.hpp"
#include "moab/CN.hpp"
#include "moab/CartVect.hpp"
#include "moab/BoundBox.hpp"
 
#ifdef MOAB_HAVE_MPI
#include "moab/ParallelComm.hpp"
#include "MBParallelConventions.h"
#endif
 
#include <iostream>
 
namespace moab
{
 
LloydSmoother::LloydSmoother( Interface* impl, ParallelComm* pc, Range& elms, Tag ctag, Tag ftag, double at, double rt )
    : mbImpl( impl ), myPcomm( pc ), myElems( elms ), coordsTag( ctag ), fixedTag( ftag ), absTol( at ), relTol( rt ),
      reportIts( 0 ), numIts( 0 ), iCreatedTag( false )
{
}
 
LloydSmoother::~LloydSmoother()
{
    if( iCreatedTag && fixedTag )
    {
        ErrorCode rval = mbImpl->tag_delete( fixedTag );
        MB_CHK_SET_ERR_RET( rval, "Failed to delete the fixed tag" );
    }
}
 
ErrorCode LloydSmoother::perform_smooth()
{
    if( myElems.empty() )
    {
        MB_SET_ERR( MB_FAILURE, "No elements specified to Lloyd smoother" );
    }
    else if( mbImpl->dimension_from_handle( *myElems.begin() ) != mbImpl->dimension_from_handle( *myElems.rbegin() ) )
    {
        MB_SET_ERR( MB_FAILURE, "Elements of unequal dimension specified to Lloyd smoother" );
    }
 
    int dim = mbImpl->dimension_from_handle( *myElems.begin() );
 
    // first figure out tolerance to use
    if( 0 > absTol )
    {
        // no tolerance set - get one relative to bounding box around elements
        BoundBox bb;
        MB_CHK_SET_ERR( bb.update( *mbImpl, myElems ), "Failed to compute bounding box around elements" );
        absTol = relTol * bb.diagonal_length();
    }
 
    // initialize if we need to
    MB_CHK_SET_ERR( initialize(), "Failed to initialize" );
 
    // get all vertices
    Range verts;
    MB_CHK_SET_ERR( mbImpl->get_adjacencies( myElems, 0, false, verts, Interface::UNION ),
                    "Failed to get all vertices" );
 
    // perform Lloyd relaxation:
    // 1. setup: set vertex centroids from vertex coords; filter to owned verts; get fixed tags
 
    // get all verts coords into tag; don't need to worry about filtering out fixed verts,
    // we'll just be setting to their fixed coords
    std::vector< double > vcentroids( 3 * verts.size() );
    if( !coordsTag )
    {
        MB_CHK_SET_ERR( mbImpl->get_coords( verts, &vcentroids[0] ), "Failed to get vert coords" );
    }
    else
    {
        MB_CHK_SET_ERR( mbImpl->tag_get_data( coordsTag, verts, &vcentroids[0] ),
                        "Failed to get vert coords tag values" );
    }
 
    Tag centroid;
    MB_CHK_SET_ERR( mbImpl->tag_get_handle( "", 3, MB_TYPE_DOUBLE, centroid, MB_TAG_CREAT | MB_TAG_DENSE ),
                    "Couldn't get tag handle" );
    MB_CHK_SET_ERR( mbImpl->tag_set_data( centroid, verts, &vcentroids[0] ), "Failed setting centroid tag" );
 
    Range owned_verts, shared_owned_verts;
#ifdef MOAB_HAVE_MPI
    // filter verts down to owned ones and get fixed tag for them
    if( myPcomm && myPcomm->size() > 1 )
    {
        MB_CHK_SET_ERR( myPcomm->filter_pstatus( verts, PSTATUS_NOT_OWNED, PSTATUS_NOT, -1, &owned_verts ),
                        "Failed to filter on pstatus" );
        // get shared owned verts, for exchanging tags
        MB_CHK_SET_ERR( myPcomm->filter_pstatus( owned_verts, PSTATUS_SHARED, PSTATUS_AND, -1, &shared_owned_verts ),
                        "Failed to filter for shared owned" );
        // workaround: if no shared owned verts, put a non-shared one in the list, to prevent
        // exchanging tags for all shared entities
        if( shared_owned_verts.empty() ) shared_owned_verts.insert( *verts.begin() );
    }
    else
        owned_verts = verts;
#else
    owned_verts = verts;
#endif
 
    std::vector< unsigned char > fix_tag( owned_verts.size() );
    MB_CHK_SET_ERR( mbImpl->tag_get_data( fixedTag, owned_verts, &fix_tag[0] ), "Failed to get fixed tag" );
 
    // now fill vcentroids array with positions of just owned vertices, since those are the ones
    // we're actually computing
    vcentroids.resize( 3 * owned_verts.size() );
    MB_CHK_SET_ERR( mbImpl->tag_get_data( centroid, owned_verts, &vcentroids[0] ), "Failed to get centroid tag" );
 
    // some declarations for later iterations
    std::vector< double > fcentroids( 3 * myElems.size() );  // fcentroids for element centroids
    std::vector< double > ctag(
        3 * CN::MAX_NODES_PER_ELEMENT );  // temporary coordinate storage for verts bounding an element
    const EntityHandle* conn;             // const ptr & size to elem connectivity
    int nconn;
    Range::iterator eit, vit;               // for iterating over elems, verts
    int e, v;                               // for indexing into centroid vectors
    std::vector< EntityHandle > adj_elems;  // used in vertex iteration
 
    // 2. while !converged
    double resid = DBL_MAX;
    numIts       = 0;
    while( resid > absTol )
    {
        numIts++;
        resid = 0.0;
 
        // 2a. foreach elem: centroid = sum(vertex centroids)/num_verts_in_cell
        for( eit = myElems.begin(), e = 0; eit != myElems.end(); ++eit, e++ )
        {
            // get verts for this elem
            MB_CHK_SET_ERR( mbImpl->get_connectivity( *eit, conn, nconn ), "Failed to get connectivity" );
            // get centroid tags for those verts
            MB_CHK_SET_ERR( mbImpl->tag_get_data( centroid, conn, nconn, &ctag[0] ), "Failed to get centroid" );
            fcentroids[3 * e + 0] = fcentroids[3 * e + 1] = fcentroids[3 * e + 2] = 0.0;
            for( v = 0; v < nconn; v++ )
            {
                fcentroids[3 * e + 0] += ctag[3 * v + 0];
                fcentroids[3 * e + 1] += ctag[3 * v + 1];
                fcentroids[3 * e + 2] += ctag[3 * v + 2];
            }
            for( v = 0; v < 3; v++ )
                fcentroids[3 * e + v] /= nconn;
        }
        MB_CHK_SET_ERR( mbImpl->tag_set_data( centroid, myElems, &fcentroids[0] ), "Failed to set elem centroid" );
 
        // 2b. foreach owned vertex:
        for( vit = owned_verts.begin(), v = 0; vit != owned_verts.end(); ++vit, v++ )
        {
            // if !fixed
            if( fix_tag[v] ) continue;
            // vertex centroid = sum(cell centroids)/ncells
            adj_elems.clear();
            MB_CHK_SET_ERR( mbImpl->get_adjacencies( &( *vit ), 1, dim, false, adj_elems ), "Failed getting adjs" );
            MB_CHK_SET_ERR( mbImpl->tag_get_data( centroid, &adj_elems[0], adj_elems.size(), &fcentroids[0] ),
                            "Failed to get elem centroid" );
            double vnew[] = { 0.0, 0.0, 0.0 };
            for( e = 0; e < (int)adj_elems.size(); e++ )
            {
                vnew[0] += fcentroids[3 * e + 0];
                vnew[1] += fcentroids[3 * e + 1];
                vnew[2] += fcentroids[3 * e + 2];
            }
            for( e = 0; e < 3; e++ )
                vnew[e] /= adj_elems.size();
            double delta = ( CartVect( vnew ) - CartVect( &vcentroids[3 * v] ) ).length();
            resid        = ( v ? std::max( resid, delta ) : delta );
            for( e = 0; e < 3; e++ )
                vcentroids[3 * v + e] = vnew[e];
        }
 
        // set the centroid tag; having them only in vcentroids array isn't enough, as vertex
        // centroids are accessed randomly in loop over faces
        MB_CHK_SET_ERR( mbImpl->tag_set_data( centroid, owned_verts, &vcentroids[0] ),
                        "Failed to set vertex centroid" );
 
#ifdef MOAB_HAVE_MPI
        // 2c. exchange tags on owned verts
        if( myPcomm && myPcomm->size() > 1 )
        {
            MB_CHK_SET_ERR( myPcomm->exchange_tags( centroid, shared_owned_verts ), "Failed to exchange tags" );
        }
#endif
 
        if( reportIts && !( numIts % reportIts ) )
        {
            double global_max = resid;
#ifdef MOAB_HAVE_MPI
            // global reduce for maximum delta, then report it
            if( myPcomm && myPcomm->size() > 1 )
                MPI_Reduce( &resid, &global_max, 1, MPI_DOUBLE, MPI_MAX, 0, myPcomm->comm() );
            if( !myPcomm || !myPcomm->rank() )
#endif
                std::cout << "Max residual = " << global_max << std::endl;
        }
 
    }  // end while
 
    // write the tag back onto vertex coordinates
    if( !coordsTag )
    {
        MB_CHK_SET_ERR( mbImpl->set_coords( owned_verts, &vcentroids[0] ), "Failed to set vertex coords" );
    }
    else
    {
        MB_CHK_SET_ERR( mbImpl->tag_set_data( coordsTag, owned_verts, &vcentroids[0] ),
                        "Failed to set vert coords tag values" );
    }
 
    return MB_SUCCESS;
}
 
ErrorCode LloydSmoother::initialize()
{
    // first, check for tag; if we don't have it, make one and mark skin as fixed
    if( !fixedTag )
    {
        unsigned char fixed = 0x0;
        MB_CHK_SET_ERR( mbImpl->tag_get_handle( "", 1, MB_TYPE_OPAQUE, fixedTag, MB_TAG_DENSE | MB_TAG_CREAT, &fixed ),
                        "Trouble making fixed tag" );
        iCreatedTag = true;
 
        // get the skin; get facets, because we might need to filter on shared entities
        Skinner skinner( mbImpl );
        Range skin, skin_verts;
        MB_CHK_SET_ERR( skinner.find_skin( 0, myElems, false, skin ), "Unable to find skin" );
 
#ifdef MOAB_HAVE_MPI
        // need to do a little extra if we're working in parallel
        if( myPcomm )
        {
            // filter out ghost and interface facets
            MB_CHK_SET_ERR( myPcomm->filter_pstatus( skin, PSTATUS_GHOST | PSTATUS_INTERFACE, PSTATUS_NOT ),
                            "Failed to filter on shared status" );
        }
#endif
        // get the vertices from those entities
        MB_CHK_SET_ERR( mbImpl->get_adjacencies( skin, 0, false, skin_verts, Interface::UNION ),
                        "Trouble getting vertices" );
 
        // mark them fixed
        std::vector< unsigned char > marks( skin_verts.size(), 0x1 );
        MB_CHK_SET_ERR( mbImpl->tag_set_data( fixedTag, skin_verts, &marks[0] ), "Unable to set tag on skin" );
    }
 
    return MB_SUCCESS;
}
 
}  // namespace moab