#include <ReadVtk.hpp>

Inheritance diagram for moab::ReadVtk:

Collaboration diagram for moab::ReadVtk:

Public Member Functions
ErrorCode	load_file (const char file_name, const EntityHandle file_set, const FileOptions &opts, const SubsetList subset_list=0, const Tag file_id_tag=0)
	load a file More...

ErrorCode	read_tag_values (const char file_name, const char tag_name, const FileOptions &opts, std::vector< int > &tag_values_out, const SubsetList *subset_list=0)
	Read tag values from a file. More...

	ReadVtk (Interface *impl=NULL)
	Constructor. More...

virtual	~ReadVtk ()
	Destructor. More...

Public Member Functions inherited from moab::ReaderIface
virtual	~ReaderIface ()

Static Public Member Functions
static ReaderIface *	factory (Interface *)

Protected Member Functions
ErrorCode	allocate_vertices (long num_vtx, EntityHandle &start_handle_out, double &x_coord_array_out, double &y_coord_array_out, double *&z_coord_array_out)

ErrorCode	read_vertices (FileTokenizer &tokens, long num_verts, EntityHandle &start_handle_out)

ErrorCode	allocate_elements (long num_elements, int vert_per_element, EntityType type, EntityHandle &start_handle_out, EntityHandle *&conn_array_out, std::vector< Range > &append_to_this)

ErrorCode	vtk_read_dataset (FileTokenizer &tokens, Range &vertex_list, std::vector< Range > &element_list)

ErrorCode	vtk_read_structured_points (FileTokenizer &tokens, Range &vertex_list, std::vector< Range > &elem_list)

ErrorCode	vtk_read_structured_grid (FileTokenizer &tokens, Range &vertex_list, std::vector< Range > &elem_list)

ErrorCode	vtk_read_rectilinear_grid (FileTokenizer &tokens, Range &vertex_list, std::vector< Range > &elem_list)

ErrorCode	vtk_read_polydata (FileTokenizer &tokens, Range &vertex_list, std::vector< Range > &elem_list)

ErrorCode	vtk_read_polygons (FileTokenizer &tokens, EntityHandle first_vtx, std::vector< Range > &elem_list)

ErrorCode	vtk_read_unstructured_grid (FileTokenizer &tokens, Range &vertex_list, std::vector< Range > &elem_list)

ErrorCode	vtk_create_structured_elems (const long *dims, EntityHandle first_vtx, std::vector< Range > &elem_list)

ErrorCode	vtk_read_field (FileTokenizer &tokens)

ErrorCode	vtk_read_attrib_data (FileTokenizer &tokens, std::vector< Range > &entities)

ErrorCode	vtk_read_tag_data (FileTokenizer &tokens, int type, size_t per_elem, std::vector< Range > &entities, const char *name)

ErrorCode	vtk_read_scalar_attrib (FileTokenizer &tokens, std::vector< Range > &entities, const char *name)

ErrorCode	vtk_read_color_attrib (FileTokenizer &tokens, std::vector< Range > &entities, const char *name)

ErrorCode	vtk_read_vector_attrib (FileTokenizer &tokens, std::vector< Range > &entities, const char *name)

ErrorCode	vtk_read_texture_attrib (FileTokenizer &tokens, std::vector< Range > &entities, const char *name)

ErrorCode	vtk_read_tensor_attrib (FileTokenizer &tokens, std::vector< Range > &entities, const char *name)

ErrorCode	vtk_read_field_attrib (FileTokenizer &tokens, std::vector< Range > &entities, const char *name)

ErrorCode	store_file_ids (Tag tag, const Range &vertices, const std::vector< Range > &elements)

Private Attributes
ReadUtilIface *	readMeshIface

Interface *	mdbImpl
	interface instance More...

std::string	mPartitionTagName
	A field which, if present and having a single integer for storage, should be used to partition the mesh by range. Defaults to MATERIAL_SET_TAG_NAME. More...

Detailed Description

Definition at line 30 of file ReadVtk.hpp.

Constructor & Destructor Documentation

◆ ReadVtk()

ReadVtk::ReadVtk ( Interface * impl = NULL )

Constructor.

Definition at line 161 of file ReadVtk.cpp.

  : mdbImpl( impl ), mPartitionTagName( MATERIAL_SET_TAG_NAME )
 {
  mdbImpl->query_interface( readMeshIface );
 }

References mdbImpl, moab::Interface::query_interface(), and readMeshIface.

Referenced by factory().

◆ ~ReadVtk()

ReadVtk::~ReadVtk ( )

virtual

Destructor.

Definition at line 166 of file ReadVtk.cpp.

 {
  if( readMeshIface )
  {
  mdbImpl->release_interface( readMeshIface );
  readMeshIface = 0;
  }
 }

References mdbImpl, readMeshIface, and moab::Interface::release_interface().

Member Function Documentation

◆ allocate_elements()

ErrorCode ReadVtk::allocate_elements	(	long	num_elements,
		int	vert_per_element,
		EntityType	type,
		EntityHandle &	start_handle_out,
		EntityHandle *&	conn_array_out,
		std::vector< Range > &	append_to_this
	)

protected

Definition at line 359 of file ReadVtk.cpp.

 {
  ErrorCode result;
  
  start_handle_out = 0;
  result = readMeshIface->get_element_connect( num_elements, vert_per_element, type, MB_START_ID, start_handle_out,
  conn_array_out );
  if( MB_SUCCESS != result ) return result;
  
  Range range( start_handle_out, start_handle_out + num_elements - 1 );
  append_to_this.push_back( range );
  return MB_SUCCESS;
 }

References ErrorCode, moab::ReadUtilIface::get_element_connect(), MB_START_ID, MB_SUCCESS, and readMeshIface.

Referenced by vtk_create_structured_elems(), and vtk_read_unstructured_grid().

◆ allocate_vertices()

ErrorCode ReadVtk::allocate_vertices	(	long	num_vtx,
		EntityHandle &	start_handle_out,
		double *&	x_coord_array_out,
		double *&	y_coord_array_out,
		double *&	z_coord_array_out
	)

protected

Definition at line 320 of file ReadVtk.cpp.

 {
  ErrorCode result;
  
  // Create vertices
  std::vector< double* > arrays;
  start_handle_out = 0;
  result = readMeshIface->get_node_coords( 3, num_verts, MB_START_ID, start_handle_out, arrays );
  if( MB_SUCCESS != result ) return result;
  
  x_coord_array_out = arrays[0];
  y_coord_array_out = arrays[1];
  z_coord_array_out = arrays[2];
  
  return MB_SUCCESS;
 }

References ErrorCode, moab::ReadUtilIface::get_node_coords(), MB_START_ID, MB_SUCCESS, and readMeshIface.

Referenced by read_vertices(), vtk_read_rectilinear_grid(), and vtk_read_structured_points().

◆ factory()

ReaderIface * ReadVtk::factory ( Interface * iface )

static

Definition at line 156 of file ReadVtk.cpp.

 {
  return new ReadVtk( iface );
 }

References iface, and ReadVtk().

Referenced by moab::ReaderWriterSet::ReaderWriterSet().

◆ load_file()

ErrorCode ReadVtk::load_file	(	const char *	file_name,
		const EntityHandle *	file_set,
		const FileOptions &	opts,
		const SubsetList *	subset_list = `0`,
		const Tag *	file_id_tag = `0`
	)

virtual

load a file

Implements moab::ReaderIface.

Definition at line 188 of file ReadVtk.cpp.

 {
  ErrorCode result;
  
  int major, minor;
  char vendor_string[257];
  std::vector< Range > element_list;
  Range vertices;
  
  if( subset_list )
  {
  MB_SET_ERR( MB_UNSUPPORTED_OPERATION, "Reading subset of files not supported for VTK" );
  }
  
  // Does the caller want a field to be used for partitioning the entities?
  // If not, we'll assume any scalar integer field named MATERIAL_SET specifies partitions.
  std::string partition_tag_name;
  result = opts.get_option( "PARTITION", partition_tag_name );
  if( result == MB_SUCCESS ) mPartitionTagName = partition_tag_name;
  
  FILE* file = fopen( filename, "r" );
  if( !file ) return MB_FILE_DOES_NOT_EXIST;
  
  // Read file header
  
  if( !fgets( vendor_string, sizeof( vendor_string ), file ) )
  {
  fclose( file );
  return MB_FAILURE;
  }
  
  if( !strchr( vendor_string, '\n' ) || 2 != sscanf( vendor_string, "# vtk DataFile Version %d.%d", &major, &minor ) )
  {
  fclose( file );
  return MB_FAILURE;
  }
  
  if( !fgets( vendor_string, sizeof( vendor_string ), file ) )
  {
  fclose( file );
  return MB_FAILURE;
  }
  
  // VTK spec says this should not exceed 256 chars.
  if( !strchr( vendor_string, '\n' ) )
  {
  fclose( file );
  MB_SET_ERR( MB_FAILURE, "Vendor string (line 2) exceeds 256 characters" );
  }
  
  // Check file type
  
  FileTokenizer tokens( file, readMeshIface );
  const char* const file_type_names[] = { "ASCII", "BINARY", 0 };
  int filetype = tokens.match_token( file_type_names );
  switch( filetype )
  {
  case 2: // BINARY
  MB_SET_ERR( MB_FAILURE, "Cannot read BINARY VTK files" );
  default: // ERROR
  return MB_FAILURE;
  case 1: // ASCII
  break;
  }
  
  // Read the mesh
  if( !tokens.match_token( "DATASET" ) ) return MB_FAILURE;
  result = vtk_read_dataset( tokens, vertices, element_list );
  if( MB_SUCCESS != result ) return result;
  
  if( file_id_tag )
  {
  result = store_file_ids( *file_id_tag, vertices, element_list );
  if( MB_SUCCESS != result ) return result;
  }
  
  // Count the number of elements read
  long elem_count = 0;
  for( std::vector< Range >::iterator it = element_list.begin(); it != element_list.end(); ++it )
  elem_count += it->size();
  
  // Read attribute data until end of file.
  const char* const block_type_names[] = { "POINT_DATA", "CELL_DATA", 0 };
  std::vector< Range > vertex_list( 1 );
  vertex_list[0] = vertices;
  int blocktype = 0;
  while( !tokens.eof() )
  {
  // Get POINT_DATA or CELL_DATA
  int new_block_type = tokens.match_token( block_type_names, false );
  if( tokens.eof() ) break;
  
  if( !new_block_type )
  {
  // If next token was neither POINT_DATA nor CELL_DATA,
  // then there's another attribute under the current one.
  if( blocktype )
  tokens.unget_token();
  else
  break;
  }
  else
  {
  blocktype = new_block_type;
  long count;
  if( !tokens.get_long_ints( 1, &count ) ) return MB_FAILURE;
  
  if( blocktype == 1 && (unsigned long)count != vertices.size() )
  {
  MB_SET_ERR( MB_FAILURE, "Count inconsistent with number of vertices at line " << tokens.line_number() );
  }
  else if( blocktype == 2 && count != elem_count )
  {
  MB_SET_ERR( MB_FAILURE, "Count inconsistent with number of elements at line " << tokens.line_number() );
  }
  }
  
  if( blocktype == 1 )
  result = vtk_read_attrib_data( tokens, vertex_list );
  else
  result = vtk_read_attrib_data( tokens, element_list );
  
  if( MB_SUCCESS != result ) return result;
  }
  
  return MB_SUCCESS;
 }

References moab::FileTokenizer::eof(), ErrorCode, moab::FileTokenizer::get_long_ints(), moab::FileOptions::get_option(), moab::FileTokenizer::line_number(), moab::major, moab::FileTokenizer::match_token(), MB_FILE_DOES_NOT_EXIST, MB_SET_ERR, MB_SUCCESS, MB_UNSUPPORTED_OPERATION, moab::minor, mPartitionTagName, readMeshIface, moab::Range::size(), store_file_ids(), moab::FileTokenizer::unget_token(), vtk_read_attrib_data(), and vtk_read_dataset().

◆ read_tag_values()

ErrorCode ReadVtk::read_tag_values	(	const char *	file_name,
		const char *	tag_name,
		const FileOptions &	opts,
		std::vector< int > &	tag_values_out,
		const SubsetList *	subset_list = `0`
	)

virtual

Read tag values from a file.

Read the list if all integer tag values from the file for a tag that is a single integer value per entity.

Parameters

file_name	The file to read.
tag_name	The tag for which to read values
tag_values_out	Output: The list of tag values.
subset_list	An array of tag name and value sets specifying the subset of the file to read. If multiple tags are specified, the sets that match all tags (intersection) should be read.
subset_list_length	The length of the 'subset_list' array.

Implements moab::ReaderIface.

Definition at line 179 of file ReadVtk.cpp.

 {
  return MB_NOT_IMPLEMENTED;
 }

References MB_NOT_IMPLEMENTED.

◆ read_vertices()

ErrorCode ReadVtk::read_vertices	(	FileTokenizer &	tokens,
		long	num_verts,
		EntityHandle &	start_handle_out
	)

protected

Definition at line 341 of file ReadVtk.cpp.

 {
  ErrorCode result;
  double *x, *y, *z;
  
  result = allocate_vertices( num_verts, start_handle_out, x, y, z );
  if( MB_SUCCESS != result ) return result;
  
  // Read vertex coordinates
  for( long vtx = 0; vtx < num_verts; ++vtx )
  {
  if( !tokens.get_doubles( 1, x++ ) || !tokens.get_doubles( 1, y++ ) || !tokens.get_doubles( 1, z++ ) )
  return MB_FAILURE;
  }
  
  return MB_SUCCESS;
 }

References allocate_vertices(), ErrorCode, moab::FileTokenizer::get_doubles(), and MB_SUCCESS.

Referenced by vtk_read_polydata(), vtk_read_structured_grid(), and vtk_read_unstructured_grid().

◆ store_file_ids()

ErrorCode ReadVtk::store_file_ids	(	Tag	tag,
		const Range &	vertices,
		const std::vector< Range > &	elements
	)

protected

Definition at line 1221 of file ReadVtk.cpp.

 {
  ErrorCode rval;
  
  rval = readMeshIface->assign_ids( tag, verts );
  if( MB_SUCCESS != rval ) return rval;
  
  int id = 0;
  for( size_t i = 0; i < elems.size(); ++i )
  {
  rval = readMeshIface->assign_ids( tag, elems[i], id );
  id += elems[i].size();
  }
  
  return MB_SUCCESS;
 }

References moab::ReadUtilIface::assign_ids(), ErrorCode, MB_SUCCESS, and readMeshIface.

Referenced by load_file().

◆ vtk_create_structured_elems()

ErrorCode ReadVtk::vtk_create_structured_elems	(	const long *	dims,
		EntityHandle	first_vtx,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 864 of file ReadVtk.cpp.

 {
  ErrorCode result;
  // int non_zero[3] = {0, 0, 0}; // True if dim > 0 for x, y, z respectively
  long elem_dim = 0; // Element dimension (2->quad, 3->hex)
  long num_elems = 1; // Total number of elements
  long vert_per_elem; // Element connectivity length
  long edims[3] = { 1, 1, 1 }; // Number of elements in each grid direction
  
  // Populate above data
  for( int d = 0; d < 3; d++ )
  {
  if( dims[d] > 1 )
  {
  // non_zero[elem_dim] = d;
  ++elem_dim;
  edims[d] = dims[d] - 1;
  num_elems *= edims[d];
  }
  }
  vert_per_elem = 1 << elem_dim;
  
  // Get element type from element dimension
  EntityType type;
  switch( elem_dim )
  {
  case 1:
  type = MBEDGE;
  break;
  case 2:
  type = MBQUAD;
  break;
  case 3:
  type = MBHEX;
  break;
  default:
  MB_SET_ERR( MB_FAILURE, "Invalid dimension for structured elements: " << elem_dim );
  }
  
  // Allocate storage for elements
  EntityHandle start_handle = 0;
  EntityHandle* conn_array;
  result = allocate_elements( num_elems, vert_per_elem, type, start_handle, conn_array, elem_list );
  if( MB_SUCCESS != result ) return MB_FAILURE;
  
  EntityHandle* conn_sav = conn_array;
  
  // Offsets of element vertices in grid relative to corner closest to origin
  long k = dims[0] * dims[1];
  const long corners[8] = { 0, 1, 1 + dims[0], dims[0], k, k + 1, k + 1 + dims[0], k + dims[0] };
  
  // Populate element list
  for( long z = 0; z < edims[2]; ++z )
  for( long y = 0; y < edims[1]; ++y )
  for( long x = 0; x < edims[0]; ++x )
  {
  const long index = x + y * dims[0] + z * ( dims[0] * dims[1] );
  for( long j = 0; j < vert_per_elem; ++j, ++conn_array )
  *conn_array = index + corners[j] + first_vtx;
  }
  
  // Notify MOAB of the new elements
  result = readMeshIface->update_adjacencies( start_handle, num_elems, vert_per_elem, conn_sav );
  if( MB_SUCCESS != result ) return result;
  
  return MB_SUCCESS;
 }

References allocate_elements(), ErrorCode, MB_SET_ERR, MB_SUCCESS, MBEDGE, MBHEX, MBQUAD, readMeshIface, and moab::ReadUtilIface::update_adjacencies().

Referenced by vtk_read_rectilinear_grid(), vtk_read_structured_grid(), and vtk_read_structured_points().

◆ vtk_read_attrib_data()

ErrorCode ReadVtk::vtk_read_attrib_data	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities
	)

protected

Definition at line 972 of file ReadVtk.cpp.

 {
  const char* const type_names[] = { "SCALARS", "COLOR_SCALARS", "VECTORS", "NORMALS", "TEXTURE_COORDINATES",
  "TENSORS", "FIELD", 0 };
  
  int type = tokens.match_token( type_names );
  const char* tmp_name = tokens.get_string();
  if( !type || !tmp_name ) return MB_FAILURE;
  
  std::string name_alloc( tmp_name );
  const char* name = name_alloc.c_str();
  switch( type )
  {
  case 1:
  return vtk_read_scalar_attrib( tokens, entities, name );
  case 2:
  return vtk_read_color_attrib( tokens, entities, name );
  case 3:
  return vtk_read_vector_attrib( tokens, entities, name );
  case 4:
  return vtk_read_vector_attrib( tokens, entities, name );
  case 5:
  return vtk_read_texture_attrib( tokens, entities, name );
  case 6:
  return vtk_read_tensor_attrib( tokens, entities, name );
  case 7:
  return vtk_read_field_attrib( tokens, entities, name );
  }
  
  return MB_FAILURE;
 }

References entities, moab::FileTokenizer::get_string(), moab::FileTokenizer::match_token(), vtk_read_color_attrib(), vtk_read_field_attrib(), vtk_read_scalar_attrib(), vtk_read_tensor_attrib(), vtk_read_texture_attrib(), and vtk_read_vector_attrib().

Referenced by load_file().

◆ vtk_read_color_attrib()

ErrorCode ReadVtk::vtk_read_color_attrib	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1154 of file ReadVtk.cpp.

 {
  long size;
  if( !tokens.get_long_ints( 1, &size ) || size < 1 ) return MB_FAILURE;
  
  return vtk_read_tag_data( tokens, 10, size, entities, name );
 }

References entities, moab::FileTokenizer::get_long_ints(), size, and vtk_read_tag_data().

Referenced by vtk_read_attrib_data().

◆ vtk_read_dataset()

ErrorCode ReadVtk::vtk_read_dataset	(	FileTokenizer &	tokens,
		Range &	vertex_list,
		std::vector< Range > &	element_list
	)

protected

Definition at line 378 of file ReadVtk.cpp.

 {
  const char* const data_type_names[] = {
  "STRUCTURED_POINTS", "STRUCTURED_GRID", "UNSTRUCTURED_GRID", "POLYDATA", "RECTILINEAR_GRID", "FIELD", 0 };
  int datatype = tokens.match_token( data_type_names );
  switch( datatype )
  {
  case 1:
  return vtk_read_structured_points( tokens, vertex_list, element_list );
  case 2:
  return vtk_read_structured_grid( tokens, vertex_list, element_list );
  case 3:
  return vtk_read_unstructured_grid( tokens, vertex_list, element_list );
  case 4:
  return vtk_read_polydata( tokens, vertex_list, element_list );
  case 5:
  return vtk_read_rectilinear_grid( tokens, vertex_list, element_list );
  case 6:
  return vtk_read_field( tokens );
  default:
  return MB_FAILURE;
  }
 }

References moab::FileTokenizer::match_token(), vtk_read_field(), vtk_read_polydata(), vtk_read_rectilinear_grid(), vtk_read_structured_grid(), vtk_read_structured_points(), and vtk_read_unstructured_grid().

Referenced by load_file().

◆ vtk_read_field()

ErrorCode ReadVtk::vtk_read_field ( FileTokenizer & tokens )

protected

Definition at line 934 of file ReadVtk.cpp.

 {
  // This is not supported yet.
  // Parse the data but throw it away because
  // Mesquite has no internal representation for it.
  
  // Could save this in tags, but the only useful thing that
  // could be done with the data is to write it back out
  // with the modified mesh. As there's no way to save the
  // type of a tag in Mesquite, it cannot be written back
  // out correctly either.
  // FIXME: Don't know what to do with this data.
  // For now, read it and throw it out.
  
  long num_arrays;
  if( !tokens.get_string() || // Name
  !tokens.get_long_ints( 1, &num_arrays ) )
  return MB_FAILURE;
  
  for( long i = 0; i < num_arrays; ++i )
  {
  /*const char* name =*/tokens.get_string();
  
  long dims[2];
  if( !tokens.get_long_ints( 2, dims ) || !tokens.match_token( vtk_type_names ) ) return MB_FAILURE;
  
  long num_vals = dims[0] * dims[1];
  
  for( long j = 0; j < num_vals; j++ )
  {
  double junk;
  if( !tokens.get_doubles( 1, &junk ) ) return MB_FAILURE;
  }
  }
  
  return MB_SUCCESS;
 }

References moab::FileTokenizer::get_doubles(), moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_string(), moab::FileTokenizer::match_token(), MB_SUCCESS, and moab::vtk_type_names.

Referenced by vtk_read_dataset(), and vtk_read_unstructured_grid().

◆ vtk_read_field_attrib()

ErrorCode ReadVtk::vtk_read_field_attrib	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1191 of file ReadVtk.cpp.

 {
  long num_fields;
  if( !tokens.get_long_ints( 1, &num_fields ) ) return MB_FAILURE;
  
  long i;
  for( i = 0; i < num_fields; ++i )
  {
  const char* tok = tokens.get_string();
  if( !tok ) return MB_FAILURE;
  
  std::string name_alloc( tok );
  
  long num_comp;
  if( !tokens.get_long_ints( 1, &num_comp ) ) return MB_FAILURE;
  
  long num_tuples;
  if( !tokens.get_long_ints( 1, &num_tuples ) ) return MB_FAILURE;
  
  int type = tokens.match_token( vtk_type_names );
  if( !type ) return MB_FAILURE;
  
  ErrorCode result = vtk_read_tag_data( tokens, type, num_comp, entities, name_alloc.c_str() );MB_CHK_SET_ERR( result, "Error reading data for field \"" << name_alloc << "\" (" << num_comp << " components, "
  << num_tuples << " tuples, type " << type
  << ") at line " << tokens.line_number() );
  }
  
  return MB_SUCCESS;
 }

References entities, ErrorCode, moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_string(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_CHK_SET_ERR, MB_SUCCESS, vtk_read_tag_data(), and moab::vtk_type_names.

Referenced by vtk_read_attrib_data().

◆ vtk_read_polydata()

ErrorCode ReadVtk::vtk_read_polydata	(	FileTokenizer &	tokens,
		Range &	vertex_list,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 540 of file ReadVtk.cpp.

 {
  ErrorCode result;
  long num_verts;
  const char* const poly_data_names[] = { "VERTICES", "LINES", "POLYGONS", "TRIANGLE_STRIPS", 0 };
  
  if( !tokens.match_token( "POINTS" ) || !tokens.get_long_ints( 1, &num_verts ) ||
  !tokens.match_token( vtk_type_names ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  if( num_verts < 1 )
  {
  MB_SET_ERR( MB_FAILURE, "Invalid point count at line " << tokens.line_number() );
  }
  
  // Create vertices and read coordinates
  EntityHandle start_handle = 0;
  result = read_vertices( tokens, num_verts, start_handle );
  if( MB_SUCCESS != result ) return result;
  vertex_list.insert( start_handle, start_handle + num_verts - 1 );
  
  int poly_type = tokens.match_token( poly_data_names );
  switch( poly_type )
  {
  case 0:
  result = MB_FAILURE;
  break;
  case 1:
  MB_SET_ERR( MB_FAILURE, "Vertex element type at line " << tokens.line_number() );
  break;
  case 2:
  MB_SET_ERR( MB_FAILURE, "Unsupported type: polylines at line " << tokens.line_number() );
  result = MB_FAILURE;
  break;
  case 3:
  result = vtk_read_polygons( tokens, start_handle, elem_list );
  break;
  case 4:
  MB_SET_ERR( MB_FAILURE, "Unsupported type: triangle strips at line " << tokens.line_number() );
  result = MB_FAILURE;
  break;
  }
  
  return result;
 }

References ErrorCode, moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_newline(), moab::Range::insert(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_SET_ERR, MB_SUCCESS, read_vertices(), vtk_read_polygons(), and moab::vtk_type_names.

Referenced by vtk_read_dataset().

◆ vtk_read_polygons()

ErrorCode ReadVtk::vtk_read_polygons	(	FileTokenizer &	tokens,
		EntityHandle	first_vtx,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 586 of file ReadVtk.cpp.

 {
  ErrorCode result;
  long size[2];
  
  if( !tokens.get_long_ints( 2, size ) || !tokens.get_newline() ) return MB_FAILURE;
  
  const Range empty;
  std::vector< EntityHandle > conn_hdl;
  std::vector< long > conn_idx;
  EntityHandle first = 0, prev = 0, handle;
  for( int i = 0; i < size[0]; ++i )
  {
  long count;
  if( !tokens.get_long_ints( 1, &count ) ) return MB_FAILURE;
  conn_idx.resize( count );
  conn_hdl.resize( count );
  if( !tokens.get_long_ints( count, &conn_idx[0] ) ) return MB_FAILURE;
  
  for( long j = 0; j < count; ++j )
  conn_hdl[j] = first_vtx + conn_idx[j];
  
  result = mdbImpl->create_element( MBPOLYGON, &conn_hdl[0], count, handle );
  if( MB_SUCCESS != result ) return result;
  
  if( prev + 1 != handle )
  {
  if( first )
  { // True except for first iteration (first == 0)
  if( elem_list.empty() || first < elem_list.back().front() ) // Only need new range if order would get
  // mixed up, or we just began inserting
  elem_list.push_back( empty );
  elem_list.back().insert( first, prev );
  }
  first = handle;
  }
  prev = handle;
  }
  if( first )
  { // True unless no elements (size[0] == 0)
  if( elem_list.empty() || first < elem_list.back().front() ) // Only need new range if order would get mixed
  // up, or we just began inserting
  elem_list.push_back( empty );
  elem_list.back().insert( first, prev );
  }
  
  return MB_SUCCESS;
 }

References moab::Interface::create_element(), ErrorCode, moab::GeomUtil::first(), moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_newline(), MB_SUCCESS, MBPOLYGON, mdbImpl, and size.

Referenced by vtk_read_polydata().

◆ vtk_read_rectilinear_grid()

ErrorCode ReadVtk::vtk_read_rectilinear_grid	(	FileTokenizer &	tokens,
		Range &	vertex_list,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 482 of file ReadVtk.cpp.

 {
  int i, j, k;
  long dims[3];
  const char* labels[] = { "X_COORDINATES", "Y_COORDINATES", "Z_COORDINATES" };
  std::vector< double > coords[3];
  ErrorCode result;
  
  if( !tokens.match_token( "DIMENSIONS" ) || !tokens.get_long_ints( 3, dims ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  if( dims[0] < 1 || dims[1] < 1 || dims[2] < 1 )
  {
  MB_SET_ERR( MB_FAILURE, "Invalid dimension at line " << tokens.line_number() );
  }
  
  for( i = 0; i < 3; i++ )
  {
  long count;
  if( !tokens.match_token( labels[i] ) || !tokens.get_long_ints( 1, &count ) ||
  !tokens.match_token( vtk_type_names ) )
  return MB_FAILURE;
  
  if( count != dims[i] )
  {
  MB_SET_ERR( MB_FAILURE, "Coordinate count inconsistent with dimensions at line " << tokens.line_number() );
  }
  
  coords[i].resize( count );
  if( !tokens.get_doubles( count, &coords[i][0] ) ) return MB_FAILURE;
  }
  
  // Create vertices
  double *x, *y, *z;
  EntityHandle start_handle = 0;
  long num_verts = dims[0] * dims[1] * dims[2];
  result = allocate_vertices( num_verts, start_handle, x, y, z );
  if( MB_SUCCESS != result ) return result;
  vertex_list.insert( start_handle, start_handle + num_verts - 1 );
  
  // Calculate vertex coordinates
  for( k = 0; k < dims[2]; ++k )
  for( j = 0; j < dims[1]; ++j )
  for( i = 0; i < dims[0]; ++i )
  {
  *x = coords[0][i];
  ++x;
  *y = coords[1][j];
  ++y;
  *z = coords[2][k];
  ++z;
  }
  
  return vtk_create_structured_elems( dims, start_handle, elem_list );
 }

References allocate_vertices(), ErrorCode, moab::FileTokenizer::get_doubles(), moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_newline(), moab::Range::insert(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_SET_ERR, MB_SUCCESS, vtk_create_structured_elems(), and moab::vtk_type_names.

Referenced by vtk_read_dataset().

◆ vtk_read_scalar_attrib()

ErrorCode ReadVtk::vtk_read_scalar_attrib	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1126 of file ReadVtk.cpp.

 {
  int type = tokens.match_token( vtk_type_names );
  if( !type ) return MB_FAILURE;
  
  long size;
  const char* tok = tokens.get_string();
  if( !tok ) return MB_FAILURE;
  
  const char* end = 0;
  size = strtol( tok, (char**)&end, 0 );
  if( *end )
  {
  size = 1;
  tokens.unget_token();
  }
  
  // VTK spec says cannot be greater than 4--do we care?
  if( size < 1 )
  { //|| size > 4)
  MB_SET_ERR( MB_FAILURE, "Scalar count out of range [1,4] at line " << tokens.line_number() );
  }
  
  if( !tokens.match_token( "LOOKUP_TABLE" ) || !tokens.match_token( "default" ) ) return MB_FAILURE;
  
  return vtk_read_tag_data( tokens, type, size, entities, name );
 }

References entities, moab::FileTokenizer::get_string(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_SET_ERR, size, moab::FileTokenizer::unget_token(), vtk_read_tag_data(), and moab::vtk_type_names.

Referenced by vtk_read_attrib_data().

◆ vtk_read_structured_grid()

ErrorCode ReadVtk::vtk_read_structured_grid	(	FileTokenizer &	tokens,
		Range &	vertex_list,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 449 of file ReadVtk.cpp.

 {
  long num_verts, dims[3];
  ErrorCode result;
  
  if( !tokens.match_token( "DIMENSIONS" ) || !tokens.get_long_ints( 3, dims ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  if( dims[0] < 1 || dims[1] < 1 || dims[2] < 1 )
  {
  MB_SET_ERR( MB_FAILURE, "Invalid dimension at line " << tokens.line_number() );
  }
  
  if( !tokens.match_token( "POINTS" ) || !tokens.get_long_ints( 1, &num_verts ) ||
  !tokens.match_token( vtk_type_names ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  if( num_verts != ( dims[0] * dims[1] * dims[2] ) )
  {
  MB_SET_ERR( MB_FAILURE, "Point count not consistent with dimensions at line " << tokens.line_number() );
  }
  
  // Create and read vertices
  EntityHandle start_handle = 0;
  result = read_vertices( tokens, num_verts, start_handle );
  if( MB_SUCCESS != result ) return result;
  vertex_list.insert( start_handle, start_handle + num_verts - 1 );
  
  return vtk_create_structured_elems( dims, start_handle, elem_list );
 }

References ErrorCode, moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_newline(), moab::Range::insert(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_SET_ERR, MB_SUCCESS, read_vertices(), vtk_create_structured_elems(), and moab::vtk_type_names.

Referenced by vtk_read_dataset().

◆ vtk_read_structured_points()

ErrorCode ReadVtk::vtk_read_structured_points	(	FileTokenizer &	tokens,
		Range &	vertex_list,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 402 of file ReadVtk.cpp.

 {
  long i, j, k;
  long dims[3];
  double origin[3], space[3];
  ErrorCode result;
  
  if( !tokens.match_token( "DIMENSIONS" ) || !tokens.get_long_ints( 3, dims ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  if( dims[0] < 1 || dims[1] < 1 || dims[2] < 1 )
  {
  MB_SET_ERR( MB_FAILURE, "Invalid dimension at line " << tokens.line_number() );
  }
  
  if( !tokens.match_token( "ORIGIN" ) || !tokens.get_doubles( 3, origin ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  const char* const spacing_names[] = { "SPACING", "ASPECT_RATIO", 0 };
  if( !tokens.match_token( spacing_names ) || !tokens.get_doubles( 3, space ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  // Create vertices
  double *x, *y, *z;
  EntityHandle start_handle = 0;
  long num_verts = dims[0] * dims[1] * dims[2];
  result = allocate_vertices( num_verts, start_handle, x, y, z );
  if( MB_SUCCESS != result ) return result;
  vertex_list.insert( start_handle, start_handle + num_verts - 1 );
  
  for( k = 0; k < dims[2]; ++k )
  for( j = 0; j < dims[1]; ++j )
  for( i = 0; i < dims[0]; ++i )
  {
  *x = origin[0] + i * space[0];
  ++x;
  *y = origin[1] + j * space[1];
  ++y;
  *z = origin[2] + k * space[2];
  ++z;
  }
  
  return vtk_create_structured_elems( dims, start_handle, elem_list );
 }

References allocate_vertices(), ErrorCode, moab::FileTokenizer::get_doubles(), moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_newline(), moab::Range::insert(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_SET_ERR, MB_SUCCESS, and vtk_create_structured_elems().

Referenced by vtk_read_dataset().

◆ vtk_read_tag_data()

ErrorCode ReadVtk::vtk_read_tag_data	(	FileTokenizer &	tokens,
		int	type,
		size_t	per_elem,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1004 of file ReadVtk.cpp.

 {
  ErrorCode result;
  DataType mb_type;
  if( type == 1 )
  {
  mb_type = MB_TYPE_BIT;
  }
  else if( type >= 2 && type <= 9 )
  {
  mb_type = MB_TYPE_INTEGER;
  }
  else if( type == 10 || type == 11 )
  {
  mb_type = MB_TYPE_DOUBLE;
  }
  else if( type == 12 )
  {
  mb_type = MB_TYPE_INTEGER;
  }
  else
  return MB_FAILURE;
  
 #ifdef MB_VTK_MATERIAL_SETS
  size_t size;
  if( type == 1 )
  {
  size = sizeof( bool );
  }
  else if( type >= 2 && type <= 9 )
  {
  size = sizeof( int );
  }
  else if( type == 10 || type == 11 )
  {
  size = sizeof( double );
  }
  else /* (type == 12) */
  {
  size = 4; // Could be 4 or 8, but we don't know. Hope it's 4 because MOAB doesn't support
  // 64-bit ints.
  }
  Modulator materialMap( this->mdbImpl );
  result = materialMap.initialize( this->mPartitionTagName, mb_type, size, per_elem );MB_CHK_SET_ERR( result, "MaterialMap tag (" << this->mPartitionTagName << ") creation failed." );
  bool isMaterial = size * per_elem <= 4 && // Must have int-sized values (ParallelComm requires it)
  !this->mPartitionTagName.empty() && // Must have a non-empty field name...
  !strcmp( name, this->mPartitionTagName.c_str() ); // ... that matches our spec.
 #endif // MB_VTK_MATERIAL_SETS
  
  // Get/create tag
  Tag handle;
  result = mdbImpl->tag_get_handle( name, per_elem, mb_type, handle, MB_TAG_DENSE | MB_TAG_CREAT );MB_CHK_SET_ERR( result, "Tag name conflict for attribute \"" << name << "\" at line " << tokens.line_number() );
  
  std::vector< Range >::iterator iter;
  
  if( type == 1 )
  {
  for( iter = entities.begin(); iter != entities.end(); ++iter )
  {
  bool* data = new bool[iter->size() * per_elem];
  if( !tokens.get_booleans( per_elem * iter->size(), data ) )
  {
  delete[] data;
  return MB_FAILURE;
  }
  
  bool* data_iter = data;
  Range::iterator ent_iter = iter->begin();
  for( ; ent_iter != iter->end(); ++ent_iter )
  {
  unsigned char bits = 0;
  for( unsigned j = 0; j < per_elem; ++j, ++data_iter )
  bits |= (unsigned char)( *data_iter << j );
 #ifdef MB_VTK_MATERIAL_SETS
  if( isMaterial ) materialMap.add_entity( *ent_iter, &bits, 1 );
 #endif // MB_VTK_MATERIAL_SETS
  result = mdbImpl->tag_set_data( handle, &*ent_iter, 1, &bits );
  if( MB_SUCCESS != result )
  {
  delete[] data;
  return result;
  }
  }
  delete[] data;
  }
  }
  else if( ( type >= 2 && type <= 9 ) || type == 12 )
  {
  std::vector< int > data;
  for( iter = entities.begin(); iter != entities.end(); ++iter )
  {
  data.resize( iter->size() * per_elem );
  if( !tokens.get_integers( iter->size() * per_elem, &data[0] ) ) return MB_FAILURE;
 #ifdef MB_VTK_MATERIAL_SETS
  if( isMaterial ) materialMap.add_entities( *iter, (unsigned char*)&data[0], per_elem * size );
 #endif // MB_VTK_MATERIAL_SETS
  result = mdbImpl->tag_set_data( handle, *iter, &data[0] );
  if( MB_SUCCESS != result ) return result;
  }
  }
  else if( type == 10 || type == 11 )
  {
  std::vector< double > data;
  for( iter = entities.begin(); iter != entities.end(); ++iter )
  {
  data.resize( iter->size() * per_elem );
  if( !tokens.get_doubles( iter->size() * per_elem, &data[0] ) ) return MB_FAILURE;
 #ifdef MB_VTK_MATERIAL_SETS
  if( isMaterial ) materialMap.add_entities( *iter, (unsigned char*)&data[0], per_elem * size );
 #endif // MB_VTK_MATERIAL_SETS
  result = mdbImpl->tag_set_data( handle, *iter, &data[0] );
  if( MB_SUCCESS != result ) return result;
  }
  }
  
  return MB_SUCCESS;
 }

References entities, ErrorCode, moab::FileTokenizer::get_booleans(), moab::FileTokenizer::get_doubles(), moab::FileTokenizer::get_integers(), moab::FileTokenizer::line_number(), MB_CHK_SET_ERR, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_DENSE, MB_TYPE_BIT, MB_TYPE_DOUBLE, MB_TYPE_INTEGER, mdbImpl, mPartitionTagName, size, moab::Interface::tag_get_handle(), and moab::Interface::tag_set_data().

Referenced by vtk_read_color_attrib(), vtk_read_field_attrib(), vtk_read_scalar_attrib(), vtk_read_tensor_attrib(), vtk_read_texture_attrib(), and vtk_read_vector_attrib().

◆ vtk_read_tensor_attrib()

ErrorCode ReadVtk::vtk_read_tensor_attrib	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1183 of file ReadVtk.cpp.

 {
  int type = tokens.match_token( vtk_type_names );
  if( !type ) return MB_FAILURE;
  
  return vtk_read_tag_data( tokens, type, 9, entities, name );
 }

References entities, moab::FileTokenizer::match_token(), vtk_read_tag_data(), and moab::vtk_type_names.

Referenced by vtk_read_attrib_data().

◆ vtk_read_texture_attrib()

ErrorCode ReadVtk::vtk_read_texture_attrib	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1170 of file ReadVtk.cpp.

 {
  int type, dim;
  if( !tokens.get_integers( 1, &dim ) || !( type = tokens.match_token( vtk_type_names ) ) ) return MB_FAILURE;
  
  if( dim < 1 || dim > 3 )
  {
  MB_SET_ERR( MB_FAILURE, "Invalid dimension (" << dim << ") at line " << tokens.line_number() );
  }
  
  return vtk_read_tag_data( tokens, type, dim, entities, name );
 }

References dim, entities, moab::FileTokenizer::get_integers(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_SET_ERR, vtk_read_tag_data(), and moab::vtk_type_names.

Referenced by vtk_read_attrib_data().

◆ vtk_read_unstructured_grid()

ErrorCode ReadVtk::vtk_read_unstructured_grid	(	FileTokenizer &	tokens,
		Range &	vertex_list,
		std::vector< Range > &	elem_list
	)

protected

Definition at line 635 of file ReadVtk.cpp.

 {
  ErrorCode result;
  long i, num_verts, num_elems[2];
  EntityHandle tmp_conn_list[27];
  
  // Poorly formatted VTK legacy format document seems to
  // lead many to think that a FIELD block can occur within
  // an UNSTRUCTURED_GRID dataset rather than as its own data
  // set. So allow for field data between other blocks of
  // data.
  
  const char* pts_str[] = { "FIELD", "POINTS", 0 };
  while( 1 == ( i = tokens.match_token( pts_str ) ) )
  {
  result = vtk_read_field( tokens );
  if( MB_SUCCESS != result ) return result;
  }
  if( i != 2 ) return MB_FAILURE;
  
  if( !tokens.get_long_ints( 1, &num_verts ) || !tokens.match_token( vtk_type_names ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  if( num_verts < 1 )
  {
  MB_SET_ERR( MB_FAILURE, "Invalid point count at line " << tokens.line_number() );
  }
  
  // Create vertices and read coordinates
  EntityHandle first_vertex = 0;
  result = read_vertices( tokens, num_verts, first_vertex );
  if( MB_SUCCESS != result ) return result;
  vertex_list.insert( first_vertex, first_vertex + num_verts - 1 );
  
  const char* cell_str[] = { "FIELD", "CELLS", 0 };
  while( 1 == ( i = tokens.match_token( cell_str ) ) )
  {
  result = vtk_read_field( tokens );
  if( MB_SUCCESS != result ) return result;
  }
  if( i != 2 ) return MB_FAILURE;
  
  if( !tokens.get_long_ints( 2, num_elems ) || !tokens.get_newline() ) return MB_FAILURE;
  
  // Read element connectivity for all elements
  std::vector< long > connectivity( num_elems[1] );
  if( !tokens.get_long_ints( num_elems[1], &connectivity[0] ) ) return MB_FAILURE;
  
  if( !tokens.match_token( "CELL_TYPES" ) || !tokens.get_long_ints( 1, &num_elems[1] ) || !tokens.get_newline() )
  return MB_FAILURE;
  
  // Read element types
  std::vector< long > types( num_elems[0] );
  if( !tokens.get_long_ints( num_elems[0], &types[0] ) ) return MB_FAILURE;
  
  // Create elements in blocks of the same type
  // It is important to preserve the order in
  // which the elements were read for later reading
  // attribute data.
  long id = 0;
  std::vector< long >::iterator conn_iter = connectivity.begin();
  while( id < num_elems[0] )
  {
  unsigned vtk_type = types[id];
  if( vtk_type >= VtkUtil::numVtkElemType ) return MB_FAILURE;
  
  EntityType type = VtkUtil::vtkElemTypes[vtk_type].mb_type;
  if( type == MBMAXTYPE )
  {
  MB_SET_ERR( MB_FAILURE, "Unsupported VTK element type: " << VtkUtil::vtkElemTypes[vtk_type].name << " ("
  << vtk_type << ")" );
  }
  
  int num_vtx = *conn_iter;
  if( type != MBPOLYGON && type != MBPOLYHEDRON && num_vtx != (int)VtkUtil::vtkElemTypes[vtk_type].num_nodes )
  {
  MB_SET_ERR( MB_FAILURE, "Cell " << id << " is of type '" << VtkUtil::vtkElemTypes[vtk_type].name
  << "' but has " << num_vtx << " vertices" );
  }
  
  // Find any subsequent elements of the same type
  // if polyhedra, need to look at the number of faces to put in the same range
  std::vector< long >::iterator conn_iter2 = conn_iter + num_vtx + 1;
  long end_id = id + 1;
  if( MBPOLYHEDRON != type )
  {
  while( end_id < num_elems[0] && (unsigned)types[end_id] == vtk_type && *conn_iter2 == num_vtx )
  {
  ++end_id;
  conn_iter2 += num_vtx + 1;
  }
  }
  else
  {
  // advance only if next is polyhedron too, and if number of faces is the same
  int num_faces = conn_iter[1];
  while( end_id < num_elems[0] && (unsigned)types[end_id] == vtk_type && conn_iter2[1] == num_faces )
  {
  ++end_id;
  conn_iter2 += num_vtx + 1;
  }
  // num_vtx becomes in this case num_faces
  num_vtx = num_faces; // for polyhedra, this is what we want
  // trigger vertex adjacency call
  Range firstFaces;
  mdbImpl->get_adjacencies( &first_vertex, 1, 2, false, firstFaces );
  }
  
  // Allocate element block
  long num_elem = end_id - id;
  EntityHandle start_handle = 0;
  EntityHandle* conn_array;
  
  // if type is MBVERTEX, skip, we will not create elements with one vertex
  if( MBVERTEX == type )
  {
  id += num_elem;
  conn_iter += 2 * num_elem; // skip 2 * number of 1-vertex elements
  continue;
  }
  
  result = allocate_elements( num_elem, num_vtx, type, start_handle, conn_array, elem_list );
  if( MB_SUCCESS != result ) return result;
  
  EntityHandle* conn_sav = conn_array;
  
  // Store element connectivity
  if( type != MBPOLYHEDRON )
  {
  for( ; id < end_id; ++id )
  {
  if( conn_iter == connectivity.end() )
  {
  MB_SET_ERR( MB_FAILURE, "Connectivity data truncated at cell " << id );
  }
  // Make sure connectivity length is correct.
  if( *conn_iter != num_vtx )
  {
  MB_SET_ERR( MB_FAILURE, "Cell " << id << " is of type '" << VtkUtil::vtkElemTypes[vtk_type].name
  << "' but has " << num_vtx << " vertices" );
  }
  ++conn_iter;
  
  for( i = 0; i < num_vtx; ++i, ++conn_iter )
  {
  if( conn_iter == connectivity.end() )
  {
  MB_SET_ERR( MB_FAILURE, "Connectivity data truncated at cell " << id );
  }
  
  conn_array[i] = *conn_iter + first_vertex;
  }
  
  const unsigned* order = VtkUtil::vtkElemTypes[vtk_type].node_order;
  if( order )
  {
  assert( num_vtx * sizeof( EntityHandle ) <= sizeof( tmp_conn_list ) );
  memcpy( tmp_conn_list, conn_array, num_vtx * sizeof( EntityHandle ) );
  for( int j = 0; j < num_vtx; ++j )
  conn_array[order[j]] = tmp_conn_list[j];
  }
  
  conn_array += num_vtx;
  }
  }
  else // type == MBPOLYHEDRON
  {
  // in some cases, we may need to create new elements; will it screw the tags?
  // not if the file was not from moab
  ErrorCode rv = MB_SUCCESS;
  for( ; id < end_id; ++id )
  {
  if( conn_iter == connectivity.end() )
  {
  MB_SET_ERR( MB_FAILURE, "Connectivity data truncated at polyhedra cell " << id );
  }
  ++conn_iter;
  // iterator is now at number of faces
  // we should check it is indeed num_vtx
  int num_faces = *conn_iter;
  if( num_faces != num_vtx ) MB_SET_ERR( MB_FAILURE, "Connectivity data wrong at polyhedra cell " << id );
  
  EntityHandle connec[20]; // we bet we will have only 20 vertices at most, in a
  // face in a polyhedra
  for( int j = 0; j < num_faces; j++ )
  {
  conn_iter++;
  int numverticesInFace = (int)*conn_iter;
  if( numverticesInFace > 20 )
  MB_SET_ERR( MB_FAILURE,
  "too many vertices in face index " << j << " for polyhedra cell " << id );
  // need to find the face, but first fill with vertices
  for( int k = 0; k < numverticesInFace; k++ )
  {
  connec[k] = first_vertex + *( ++conn_iter ); //
  }
  Range adjFaces;
  // find a face with these vertices; if not, we need to create one, on the fly :(
  rv = mdbImpl->get_adjacencies( connec, numverticesInFace, 2, false, adjFaces );MB_CHK_ERR( rv );
  if( adjFaces.size() >= 1 )
  {
  conn_array[j] = adjFaces[0]; // get the first face found
  }
  else
  {
  // create the face; tri, quad or polygon
  EntityType etype = MBTRI;
  if( 4 == numverticesInFace ) etype = MBQUAD;
  if( 4 < numverticesInFace ) etype = MBPOLYGON;
  
  rv = mdbImpl->create_element( etype, connec, numverticesInFace, conn_array[j] );MB_CHK_ERR( rv );
  }
  }
  
  conn_array += num_vtx; // advance for next polyhedra
  conn_iter++; // advance to the next field
  }
  }
  
  // Notify MOAB of the new elements
  result = readMeshIface->update_adjacencies( start_handle, num_elem, num_vtx, conn_sav );
  if( MB_SUCCESS != result ) return result;
  }
  
  return MB_SUCCESS;
 }

References allocate_elements(), moab::Interface::create_element(), ErrorCode, moab::Interface::get_adjacencies(), moab::FileTokenizer::get_long_ints(), moab::FileTokenizer::get_newline(), moab::Range::insert(), moab::FileTokenizer::line_number(), moab::FileTokenizer::match_token(), MB_CHK_ERR, MB_SET_ERR, MB_SUCCESS, moab::VtkElemType::mb_type, MBMAXTYPE, MBPOLYGON, MBPOLYHEDRON, MBQUAD, MBTRI, MBVERTEX, mdbImpl, moab::VtkElemType::node_order, moab::VtkUtil::numVtkElemType, read_vertices(), readMeshIface, moab::Range::size(), moab::ReadUtilIface::update_adjacencies(), vtk_read_field(), moab::vtk_type_names, and moab::VtkUtil::vtkElemTypes.

Referenced by vtk_read_dataset().

◆ vtk_read_vector_attrib()

ErrorCode ReadVtk::vtk_read_vector_attrib	(	FileTokenizer &	tokens,
		std::vector< Range > &	entities,
		const char *	name
	)

protected

Definition at line 1162 of file ReadVtk.cpp.

 {
  int type = tokens.match_token( vtk_type_names );
  if( !type ) return MB_FAILURE;
  
  return vtk_read_tag_data( tokens, type, 3, entities, name );
 }

References entities, moab::FileTokenizer::match_token(), vtk_read_tag_data(), and moab::vtk_type_names.

Referenced by vtk_read_attrib_data().

Member Data Documentation

◆ mdbImpl

Interface* moab::ReadVtk::mdbImpl

private

interface instance

Definition at line 117 of file ReadVtk.hpp.

Referenced by ReadVtk(), vtk_read_polygons(), vtk_read_tag_data(), vtk_read_unstructured_grid(), and ~ReadVtk().

◆ mPartitionTagName

std::string moab::ReadVtk::mPartitionTagName

private

A field which, if present and having a single integer for storage, should be used to partition the mesh by range. Defaults to MATERIAL_SET_TAG_NAME.

Definition at line 121 of file ReadVtk.hpp.

Referenced by load_file(), and vtk_read_tag_data().

◆ readMeshIface

ReadUtilIface* moab::ReadVtk::readMeshIface

private

Definition at line 112 of file ReadVtk.hpp.

Referenced by allocate_elements(), allocate_vertices(), load_file(), ReadVtk(), store_file_ids(), vtk_create_structured_elems(), vtk_read_unstructured_grid(), and ~ReadVtk().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ ReadVtk()

◆ ~ReadVtk()

Member Function Documentation

◆ allocate_elements()

◆ allocate_vertices()

◆ factory()

◆ load_file()

◆ read_tag_values()

◆ read_vertices()

◆ store_file_ids()

◆ vtk_create_structured_elems()

◆ vtk_read_attrib_data()

◆ vtk_read_color_attrib()

◆ vtk_read_dataset()

◆ vtk_read_field()

◆ vtk_read_field_attrib()

◆ vtk_read_polydata()

◆ vtk_read_polygons()

◆ vtk_read_rectilinear_grid()

◆ vtk_read_scalar_attrib()

◆ vtk_read_structured_grid()

◆ vtk_read_structured_points()

◆ vtk_read_tag_data()

◆ vtk_read_tensor_attrib()

◆ vtk_read_texture_attrib()

◆ vtk_read_unstructured_grid()

◆ vtk_read_vector_attrib()

Member Data Documentation

◆ mdbImpl

◆ mPartitionTagName

◆ readMeshIface