Child helper class for ucd mesh, e.g. CAM_SE (HOMME) or MPAS. More...

#include <NCWriteHelper.hpp>

Inheritance diagram for moab::UcdNCWriteHelper:

Collaboration diagram for moab::UcdNCWriteHelper:

Public Member Functions
	UcdNCWriteHelper (WriteNC *writeNC, int fileId, const FileOptions &opts, EntityHandle fileSet)

virtual	~UcdNCWriteHelper ()

Public Member Functions inherited from moab::NCWriteHelper
	NCWriteHelper (WriteNC *writeNC, int fileId, const FileOptions &opts, EntityHandle fileSet)

virtual	~NCWriteHelper ()

virtual ErrorCode	collect_mesh_info ()=0
	Collect necessary info about local mesh (implemented in child classes) More...

virtual ErrorCode	collect_variable_data (std::vector< std::string > &var_names, std::vector< int > &tstep_nums)
	Collect data for specified variables (partially implemented in child classes) More...

ErrorCode	init_file (std::vector< std::string > &var_names, std::vector< std::string > &desired_names, bool _append)
	Initialize file: this is where all defines are done The VarData dimension ids are filled up after define. More...

ErrorCode	write_values (std::vector< std::string > &var_names, std::vector< int > &tstep_nums)
	Take the info from VarData and write first non-set variables, then set variables. More...

Protected Member Functions
template<typename T >
void	jik_to_kji_stride (size_t, size_t nj, size_t nk, T dest, T source, Range &localGid)
	This version takes as input the moab range, from which we actually need just the size of each sequence, for a proper transpose of the data. More...

Protected Member Functions inherited from moab::NCWriteHelper
virtual ErrorCode	write_nonset_variables (std::vector< WriteNC::VarData > &vdatas, std::vector< int > &tstep_nums)=0

Protected Attributes
int	cDim
	Dimension numbers for nCells, nEdges and nVertices. More...

int	eDim

int	vDim

Range	localGidCellsOwned
	Local global ID for owned cells, edges and vertices. More...

Range	localGidEdgesOwned

Range	localGidVertsOwned

Protected Attributes inherited from moab::NCWriteHelper
WriteNC *	_writeNC
	Allow NCWriteHelper to directly access members of WriteNC. More...

int	_fileId
	Cache some information from WriteNC. More...

const FileOptions &	_opts

EntityHandle	_fileSet

int	nTimeSteps
	Dimensions of time and level. More...

int	nLevels

int	tDim
	Dimension numbers for time and level. More...

int	levDim

Range	localCellsOwned
	Local owned cells, edges and vertices. More...

Range	localEdgesOwned

Range	localVertsOwned

std::vector< double >	timeStepVals
	Time values of output timesteps. More...

Additional Inherited Members
Static Public Member Functions inherited from moab::NCWriteHelper
static NCWriteHelper *	get_nc_helper (WriteNC *writeNC, int fileId, const FileOptions &opts, EntityHandle fileSet)
	Get appropriate helper instance for WriteNC class based on some info in the file set. More...

Detailed Description

Child helper class for ucd mesh, e.g. CAM_SE (HOMME) or MPAS.

Definition at line 124 of file NCWriteHelper.hpp.

Constructor & Destructor Documentation

◆ UcdNCWriteHelper()

moab::UcdNCWriteHelper::UcdNCWriteHelper	(	WriteNC *	writeNC,
		int	fileId,
		const FileOptions &	opts,
		EntityHandle	fileSet
	)

inline

Definition at line 127 of file NCWriteHelper.hpp.

         : NCWriteHelper( writeNC, fileId, opts, fileSet ), cDim( -1 ), eDim( -1 ), vDim( -1 )
     {
     }

◆ ~UcdNCWriteHelper()

virtual moab::UcdNCWriteHelper::~UcdNCWriteHelper ( )

inlinevirtual

Definition at line 131 of file NCWriteHelper.hpp.

131 {}

Member Function Documentation

◆ jik_to_kji_stride()

template<typename T >

void moab::UcdNCWriteHelper::jik_to_kji_stride	(	size_t	,
		size_t	nj,
		size_t	nk,
		T *	dest,
		T *	source,
		Range &	localGid
	)

inlineprotected

This version takes as input the moab range, from which we actually need just the size of each sequence, for a proper transpose of the data.

Definition at line 137 of file NCWriteHelper.hpp.

     {
         std::size_t idxInSource = 0;  // Position of the start of the stride
         // For each subrange, we will transpose a matrix of size
         // subrange*nj*nk (subrange takes the role of ni)
         for( Range::pair_iterator pair_iter = localGid.pair_begin(); pair_iter != localGid.pair_end(); ++pair_iter )
         {
             std::size_t size_range = pair_iter->second - pair_iter->first + 1;
             std::size_t nik = size_range * nk, nij = size_range * nj;
             for( std::size_t k = 0; k != nk; k++ )
                 for( std::size_t j = 0; j != nj; j++ )
                     for( std::size_t i = 0; i != size_range; i++ )
                         dest[idxInSource + k * nij + j * size_range + i] = source[idxInSource + j * nik + i * nk + k];
             idxInSource += ( size_range * nj * nk );
         }
     }

References moab::Range::pair_begin(), and moab::Range::pair_end().

Referenced by moab::NCWriteHOMME::write_nonset_variables().

Member Data Documentation

◆ cDim

int moab::UcdNCWriteHelper::cDim

protected

Dimension numbers for nCells, nEdges and nVertices.

Definition at line 155 of file NCWriteHelper.hpp.

◆ eDim

int moab::UcdNCWriteHelper::eDim

protected

Definition at line 155 of file NCWriteHelper.hpp.

◆ localGidCellsOwned

Range moab::UcdNCWriteHelper::localGidCellsOwned

protected

Local global ID for owned cells, edges and vertices.

Definition at line 158 of file NCWriteHelper.hpp.

Referenced by moab::NCWriteGCRM::collect_mesh_info(), moab::NCWriteMPAS::collect_mesh_info(), moab::NCWriteGCRM::collect_variable_data(), moab::NCWriteMPAS::collect_variable_data(), moab::NCWriteGCRM::write_nonset_variables(), and moab::NCWriteMPAS::write_nonset_variables().

◆ localGidEdgesOwned

Range moab::UcdNCWriteHelper::localGidEdgesOwned

protected

Definition at line 158 of file NCWriteHelper.hpp.

Referenced by moab::NCWriteGCRM::collect_mesh_info(), moab::NCWriteMPAS::collect_mesh_info(), moab::NCWriteGCRM::collect_variable_data(), moab::NCWriteMPAS::collect_variable_data(), moab::NCWriteGCRM::write_nonset_variables(), and moab::NCWriteMPAS::write_nonset_variables().

◆ localGidVertsOwned

Range moab::UcdNCWriteHelper::localGidVertsOwned

protected

Definition at line 158 of file NCWriteHelper.hpp.

Referenced by moab::NCWriteGCRM::collect_mesh_info(), moab::NCWriteHOMME::collect_mesh_info(), moab::NCWriteMPAS::collect_mesh_info(), moab::NCWriteGCRM::collect_variable_data(), moab::NCWriteHOMME::collect_variable_data(), moab::NCWriteMPAS::collect_variable_data(), moab::NCWriteGCRM::write_nonset_variables(), moab::NCWriteHOMME::write_nonset_variables(), and moab::NCWriteMPAS::write_nonset_variables().

◆ vDim

int moab::UcdNCWriteHelper::vDim

protected

Definition at line 155 of file NCWriteHelper.hpp.

The documentation for this class was generated from the following file:

NCWriteHelper.hpp

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ UcdNCWriteHelper()

◆ ~UcdNCWriteHelper()

Member Function Documentation

◆ jik_to_kji_stride()

Member Data Documentation

◆ cDim

◆ eDim

◆ localGidCellsOwned

◆ localGidEdgesOwned

◆ localGidVertsOwned

◆ vDim