Getting your code and documentation into PETSc#

PETSc uses git, GitLab, and its testing system, for its source code management. All new code in PETSc is accepted via merge requests (MRs).

By submitting code, the contributor gives irretrievable consent to the redistribution and/or modification of the contributed source code as described in the PETSc open source license.

Integration branches#

`release`#

The release branch contains the latest PETSc release including bug-fixes.

Bug-fixes, along with most documentation fixes, should start from release.

$ git fetch
$ git checkout -b yourname/fix-component-name origin/release

Bug-fix updates, about every month, (e.g. 3.17.1) are tagged on release (e.g. v3.17.1).

`main`#

The main branch contains everything in the release branch as well as new features that have passed all testing and will be in the next release (e.g. version 3.18). Users developing software based on recently-added features in PETSc should follow main.

New feature branches should start from main.

$ git fetch
$ git checkout -b yourname/fix-component-name origin/main

Before filing an MR#

Read the PETSc Style and Usage Guide.
Set up your git environment.
Start a new branch and make your changes. Only use a GitLab fork of PETSc if you do not have developer (write access) to the PETSc GitLab repository.
If your contribution can be logically decomposed into 2 or more separate contributions, submit them in sequence with different branches and merge requests instead of all at once.
Include tests which cover any changes to the source code.
Run the full test suite on your machine.
```
$ make alltests TIMEOUT=600
```
Run the source checkers on your machine.
```
$ make checkbadSource
$ make lint
```
Create a clean commit history, ensuring that the commits on your branch present a logical picture of your new development.

Submitting an MR#

git push prints a URL that directly starts a merge request. Alternatively, use GitLab’s web interface.

The default target branch is main; if your branch started from release, select that as the target branch.
If the merge request resolves an outstanding issue, include a closing pattern such as Closes #123 in the MR’s description to automatically have the issue closed when the MR is merged 1 .

If you have developer access (that is you are not contributing from a fork):

Select appropriate labels including a workflow label.
Assign yourself to the MR.
Select reviewers for the MR; clicking on > Approval Rules will list appropriate reviewers.
If the branch started from release select the milestone of Vxx.yy-release-fixes
If appropriate, once the MR has been submitted, refresh the browser and then select Pipelines to examine and run testing, see Working with Pipelines.

For MRs from forks:

Select the correct target repository petsc/petsc along with the target branch.
GitLab does not allow you to set labels so @-mention one of the developers in a comment so that they can assign someone to the MR to add labels, run pipelines, and generally assist with the MR. Both the submitter and the this assignee should be listed in the upper right corner as an assigned to the MR.

Docs-only MRs#

For changes only to documentation, add the docs-only label, which will trigger a modified pipeline to automatically build a preview of the documentation. Any warnings from Sphinx will cause the pipeline to fail. Once completed, click “View App” which is to the right side in the middle of the MR page.

Documentation changes should be made to the release branch in the typical case that they apply to the release version of PETSc (including changes for the website). Changes related only to new features in the main branch should be applied there.

MR reviewing#

Once the MR has passed the pipeline, it is ready for review. The submitter/assignee must change the workflow label to workflow::Review.

It is the submitter/assigner’s responsibility to track the progress of the MR and ensure it gets merged.

If the pipeline detects problems it is the submitter/assignee’s responsibility to fix the errors.

Reviewers comment on the MR, either

by clicking on the left end of a specific line in the changes. A useful feature is the “insert suggestion” button in the comment box, to suggest an exact replacement on a line or several adjacent lines.
or in the overview if it is a general comment. When introducing a new topic (thread) in reviewing an MR, one should submit with “Start Review” and not “Comment”.

Gitlab MRs use “threads” to track discussions. When responding to a thread make sure to use the “Reply” box for that thread; do not introduce a new thread or a comment.

The submitter/assignee must mark threads as resolved when they fix the related problem.

Often, the submitter/assignee will need to update their branch in response to these comments, and re-run the pipeline.

If the submitter/assignee feels the MR is not getting reviewed in a timely manner they may assign additional reviewers to the MR and request in the discussion these same people to review by @-mentioning them.

When reviewers believe an MR is ready to be merged, they approve it. You can determine who must approve your MR by clicking on the “View eligible reviewers” towards the top of the “Overview” page.

When the merge has been approved by a sufficient number of reviewers, the pipeline passes, new commits have been properly rearranged if needed, and all threads have been resolved, the submitter/assignee must set the label to workflow::Ready-For-Merge. An integrator will then merge the MR.

Workflow labels#

The MR process, including testing and reviewing, is managed by the workflow labels that indicate the state of the MR. Every MR should have exactly one of these labels.

The standard workflow has three steps.

workflow::Pipeline-Testing The user is testing their branch. Generally, unless asked, no one else has a reason to look at such an MR.
workflow::Review The user would like their branch reviewed.
workflow::Ready-For-Merge The MR has passed all tests, passed the review, has no outstanding threads, and has a clean commit history.

The submitter/assignee of the MR is responsible for changing the workflow label appropriately during the MR process.

Some MRs may begin with either of the following workflow states.

workflow::Request-For-Comment The branch is not being requested to be merged but the user would like feedback on the branch. You do not need to test the code in this state.
workflow::In-Development The developer is working on the branch. Other developers not involved in the branch have generally no reason to look at these MRs.

Both of these should also be marked as “Draft” on the MR page. These two states are usually eventually converted by the developer to workflow::Review.

You can run the pipelines on an MR in any workflow state.

Merge request management#

At any given time, at least one of the Current Core Developers is an “MR Shepherd” and ensures that open merge requests progress through the review process, examining open merge requests and taking appropriate action.

Table 20 MR Shepherd Checks#
MR State	Action
Missing a workflow label and other labels	Add an appropriate label, or label `workflow::Waiting-on-Submitter` and ask the submitter/assignee to update
Without an assignee	Assign the submitter (if the MR is from a fork also list an appropriate developer)
Without reviewers	Assign reviewers

If MRs are inactive for too long, remind the submitter/assignee, reviewer(s), or integrator(s) of actions to take. If the submitter/assignee must take action, change the label to workflow::Waiting-on-Submitter.

Table 21 MR Inactivity Thresholds#
MR state	Inactivity threshold
`workflow:Pipeline-Testing`	One week
`workflow::Review`	One week
`workflow::Ready-for-Merge`	One week
`workflow::Waiting-on-Submitter`	One month
`workflow::Request-for-Comment`	One month
`workflow::Requires-Discussion`	One month
All others	One year

If a submitter has been unresponsive for a year, close the MR, label workflow::Inactive-closed, and let the submitter know that they may reopen if desired.

Footnotes

1: Unfortunately, these closing patterns only work for MRs to a single default branch (main), so you must manually close related issues for MRs to release.

PETSc Style and Usage Guide

Working with Pipelines