@article{binyahib_tvcg18,
title={{A Scalable Hybrid Scheme for Ray-Casting of Unstructured Volume Data}},
author={Binyahib, Roba and Peterka, Tom and Larsen, Matthew and Ma, Kwan-Liu and Childs, Hank},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2018},
publisher={IEEE}
}

@inproceedings{caino-lores_bdcat18,
author = {Caino-Lores, S. and Carretero, J. and Nicolae, B. and Yildiz, O. and Peterka, T.},
title = {{Spark-DIY: A Framework for Interoperable Spark Operations with High Performance Block-Based Data Models}},
booktitle = {Proceedings of IEEE BDCAT},
year = {2018},
location = {Zurich, Switzerland},
organization = {IEEE}
}

@article{caino-lores_access19,
title={{Toward High-Performance Computing and Big Data Analytics Convergence: The Case of Spark-DIY}},
author={Ca{\'\i}no-Lores, Silvina and Carretero, Jes{\'u}s and Nicolae, Bogdan and Yildiz, Orcun and Peterka, Tom},
journal={IEEE Access},
volume={7},
pages={156929--156955},
year={2019},
publisher={IEEE}
}

@techreport{cappello_bdec14,
title={{The Need for Resilience Research in Workflows of Big Compute and Big Data Scientific Applications}},
author={Franck Cappello and Tom Peterka},
year={2014}
}

@techreport{cappello_trust15,
title={Improving the Trust in Results of Numerical Simulations and Scientific Data Analytics},
author={Cappello, Franck and Constantinescu, Emil and Hovland, Paul and Peterka, Tom and Phillips, Carolyn and Snir, Marc and Wild, Stefan},
year={2015},
institution={Argonne National Laboratory (ANL)}
}

@inproceedings{cappello_europar17,
title={{Understanding and Improving the Trust in Results of Numerical Simulations and Scientific Data Analytics}},
author={Cappello, Franck and Gupta, Rinku and Di, Sheng and Constantinescu, Emil and Peterka, Thomas and Wild, Stefan M},
booktitle={European Conference on Parallel Processing},
pages={545--556},
year={2017},
organization={Springer}
}

@inproceedings{chau_spie12,
author = "Dennis Chau and Bradley McGinnis and Jonas Talandis and Tom Peterka and Aaron Knoll and Aslihan Sumer and Michael Papka and Julius Jellinek",
title = "Autostereoscopic Display of Large-Scale Scientific Visualization",
booktitle = "Proceedings of IS\&T / SPIE Electronic Imaging 2012",
address = "San Francisco, CA",
year = "2012"
}

@inproceedings{chaudhuri_ldav12,
author = {Abon Chaudhuri and Teng-Yok Lee and Bo Zhou and Cong Wang and Tiantian Xu and Han-Wei Shen and Tom Peterka and Yi-Jen Chiang},
title = {{Scalable Computation of Distributions from Large Scale Data Sets}},
booktitle = {Proceedings of the 2012 IEEE Large Data Analysis and Visualization Symposium LDAV'12},
address = {Seattle, WA},
year = {2012}
}

@inproceedings{chaudhuri_pacvis14,
title={{Efficient Range Distribution Query for Visualizing Scientific Data}},
author={Chaudhuri, Abon and Wei, Tzu Hsuan and Lee, Teng Yok and Shen, Han Wei and Peterka, Tom},
booktitle={Pacific Visualization Symposium (PacificVis), 2014 IEEE},
pages={201--208},
year={2014},
organization={IEEE}
}

@inproceedings{chen_spie15,
title={Simultaneous x-ray nano-ptychographic and fluorescence microscopy at the bionanoprobe},
author={Chen, S and Deng, J and Vine, DJ and Nashed, YSG and Jin, Q and Peterka, T and Jacobsen, C and Vogt, S},
booktitle={SPIE Optical Engineering+ Applications},
pages={95920I--95920I},
year={2015},
organization={International Society for Optics and Photonics}
}

@article{cherukara_nanoletters16,
title={{Ultrafast Three-Dimensional X-ray Imaging of Deformation Modes in ZnO Nanocrystals}},
author={Cherukara, Mathew J and Sasikumar, Kiran and Cha, Wonsuk and Narayanan, Badri and Leake, Steven J and Dufresne, Eric M and Peterka, Tom and McNulty, Ian and Wen, Haidan and Sankaranarayanan, Subramanian KRS and others},
journal={Nano letters},
volume={17},
number={2},
pages={1102--1108},
year={2016},
publisher={ACS Publications}
}

@article{cherukara_nanoletters17,
title={{Ultrafast Three-Dimensional Integrated Imaging of Strain in Core/Shell Semiconductor/Metal Nanostructures}},
author={Cherukara, Mathew J and Sasikumar, Kiran and DiChiara, Anthony and Leake, Steven J and Cha, Wonsuk and Dufresne, Eric M and Peterka, Tom and McNulty, Ian and Walko, Donald A and Wen, Haidan and others},
journal={Nano letters},
volume={17},
number={12},
pages={7696--7701},
year={2017},
publisher={ACS Publications}
}

@article{childs_ijhpca20,
title={{A Terminology for in Situ Visualization and Analysis Systems}},
author={Childs, Hank and Ahern, Sean D and Ahrens, James and Bauer, Andrew C and Bennett, Janine and Bethel, E Wes and Bremer, Peer-Timo and Brugger, Eric and Cottam, Joseph and Dorier, Matthieu and others},
journal={The International Journal of High Performance Computing Applications},
volume={34},
number={6},
pages={676--691},
year={2020},
publisher={SAGE Publications Sage UK: London, England}
}

@inproceedings{choi_escience18,
title={{Coupling Exascale Multiphysics Applications: Methods and Lessons Learned}},
author={Choi, Jong Youl and Chang, Choong-Seock and Dominski, Julien and Klasky, Scott and Merlo, Gabriele and Suchyta, Eric and Ainsworth, Mark and Allen, Bryce and Cappello, Franck and Churchill, Michael and others},
booktitle={2018 IEEE 14th International Conference on e-Science (e-Science)},
pages={442--452},
year={2018},
organization={IEEE}
}

@techreport{deelman16,
author = "Ewa Deelman and Tom Peterka and Ilkay Altintas and Christopher Carothers and Kerstin Kleese van Dam and Kenneth Moreland and Manish Parashar and Lavanya Ramakrishnan and Michela Taufer and Jeffrey Vetter",
title = "{The Future of Scientific Workflows Report of the DOE NGNS/CS Scientific Workflows Workshop}",
year = "2016",
url = "http://science.energy.gov/~/media/ascr/pdf/programdocuments/docs/workflows_final_report.pdf"
}

@article{deelman_ijhpca17,
author = "Ewa Deelman and Tom Peterka and Ilkay Altintas and Christopher Carothers and Kerstin Kleese van Dam and Kenneth Moreland and Manish Parashar and Lavanya Ramakrishnan and Michela Taufer and Jeffrey Vetter",
title = "{The Future of Scientific Workflows}",
year = "2017",
journal = {International Journal of High Performance Computing Applications}
}

@article{deng_pnas15,
title={Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae},
author={Deng, Junjing and Vine, David J and Chen, Si and Nashed, Youssef SG and Jin, Qiaoling and Phillips, Nicholas W and Peterka, Tom and Ross, Rob and Vogt, Stefan and Jacobsen, Chris J},
journal={Proceedings of the National Academy of Sciences},
volume={112},
number={8},
pages={2314--2319},
year={2015},
publisher={National Acad Sciences}
}

@article{deng_oe15,
title={Continuous motion scan ptychography: characterization for increased speed in coherent x-ray imaging},
author={Deng, Junjing and Nashed, Youssef SG and Chen, Si and Phillips, Nicholas W and Peterka, Tom and Ross, Rob and Vogt, Stefan and Jacobsen, Chris and Vine, David J},
journal={Optics express},
volume={23},
number={5},
pages={5438--5451},
year={2015},
publisher={Optical Society of America}
}

@article{deng_scientificreports17,
title={{X-Ray Ptychographic and Fluorescence Microscopy of Frozen-Hydrated Cells using Continuous Scanning}},
author={Deng, Junjing and Vine, David J and Chen, Si and Jin, Qiaoling and Nashed, Youssef SG and Peterka, Tom and Vogt, Stefan and Jacobsen, Chris},
journal={Scientific Reports},
volume={7},
year={2017},
publisher={Nature Publishing Group}
}

@article{deng_prb17,
title={{Nanoscale X-Ray Imaging of Circuit Features Without Wafer Etching}},
author={Deng, Junjing and Hong, Young Pyo and Chen, Si and Nashed, Youssef SG and Peterka, Tom and Levi, Anthony JF and Damoulakis, John and Saha, Sayan and Eiles, Travis and Jacobsen, Chris},
journal={Physical Review B},
volume={95},
number={10},
pages={104111},
year={2017},
publisher={APS}
}

@inproceedings{do_ccgrid22,
title={{Accelerating Scientific Workflows on HPC Platforms with In Situ Processing}},
author={Do, Tu Mai Anh and Pottier, Lo{\"\i}c and Yildiz, Orcun and Vahi, Karan and Krawczuk, Patrycja and Peterka, Tom and Deelman, Ewa},
booktitle={2022 22nd IEEE International Symposium on Cluster, Cloud and Internet Computing (CCGrid)},
pages={1--10},
year={2022},
organization={IEEE}
}

@inproceedings{dorier_ldav13,
title={{Damaris/Viz: A nonintrusive, adaptable and user-friendly in situ visualization framework}},
author={Dorier, Matthieu and Sisneros, Robert and Peterka, Tom and Antoniu, Gabriel and Semeraro, Dave},
booktitle={Large-Scale Data Analysis and Visualization (LDAV), 2013 IEEE Symposium on},
pages={67--75},
year={2013},
organization={IEEE}
}

@inproceedings{dorier_isav15,
title={Lessons Learned from Building In Situ Coupling Frameworks},
author={Dorier, Matthieu and Dreher, Matthieu and Peterka, Tom and Wozniak, Justin M and Antoniu, Gabriel and Raffin, Bruno},
booktitle={Proceedings of the First Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization},
pages={19--24},
year={2015},
organization={ACM}
}

@inproceedings{dorier_cluster16,
title={Adaptive Performance-Constrained In Situ Visualization of Atmospheric Simulations},
author={Dorier, Matthieu and Sisneros, Robert and Gomez, Leonardo Bautista and Peterka, Tom and Orf, Leigh and Rahmani, Lokman and Antoniu, Gabriel and Boug{\'e}, Luc},
booktitle={Cluster 2016-The IEEE 2016 International Conference on Cluster Computing},
year={2016}
}

@article{dorier_topc16,
title={Damaris: Addressing Performance Variability in Data Management for Post-Petascale Simulations},
author={Dorier, M and Antoniu, G and Cappello, F and Snir, M and Sisneros, R and Yildiz, O and Ibrahim, S and Peterka, T and Orf, L},
journal={To appear Journal of Parallel and Distributed Computing},
year={2016}
}

@inproceedings{dorier_pdsw17,
title={{CoSS: Proposing a Contract-Based Storage System for HPC}},
author={Matthieu Dorier and Matthieu Dreher and Tom Peterka and Robert Ross},
booktitle={Proceedings of PDSW SC17 Workshop},
year={2017}
}

@inproceedings{dorier_isav19,
title={{The Challenges of Elastic In Situ Analysis and Visualization}},
author={Dorier, Matthieu and Yildiz, Orcun and Peterka, Tom and Ross, Robert},
booktitle={Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization},
pages={23--28},
year={2019},
organization={ACM}
}

@inproceedings{dreher_cluster16,
title={{Bredala: Semantic Data Redistribution for In Situ Applications}},
author={Dreher, Matthieu and Peterka, Tom},
booktitle={Proceedings of IEEE Cluster 2016},
year={2016},
organization={IEEE}
}

@techreport{dreher_anl17,
title={{Decaf: Decoupled Dataflows for In Situ High-Performance Workflows}},
author={Dreher, Matthieu and Peterka, Tom},
year={2017},
institution={Argonne National Lab.(ANL), Argonne, IL (United States)}
}

@inproceedings{dreher_isav17,
title={{In Situ Workflows at Exascale: System Software to the Rescue}},
author={Matthieu Dreher and Swann Perarnau and Tom Peterka and Kamil Iskra and
Pete Beckman},
booktitle={Proceedings of ISAV SC17 Workshop},
year={2017}
}

@inproceedings{dreher_cluster17,
title={{Manala: a Flexible Flow Control Library for Asynchronous Task Communication}},
author={Dreher, Matthieu and Sasikumar, Kiran and Sankaranarayanan, Subramanian and Peterka, Tom},
booktitle={Cluster Computing (CLUSTER), 2017 IEEE International Conference on},
pages={509--519},
year={2017},
organization={IEEE}
}

@inproceedings{foster_europar17,
title={{Computing Just What You Need: Online Data Analysis and Reduction at Extreme Scales}},
author={Foster, Ian and Ainsworth, Mark and Allen, Bryce and Bessac, Julie and Cappello, Franck and Choi, Jong Youl and Constantinescu, Emil and Davis, Philip E and Di, Sheng and Di, Wendy and others},
booktitle={European Conference on Parallel Processing},
pages={3--19},
year={2017},
organization={Springer}
}

@article{foster_ijhpca21,
title={{Online Data Analysis and Reduction: An Important Co-design Motif for Extreme-scale Computers}},
author={Foster, Ian and Ainsworth, Mark and Bessac, Julie and Cappello, Franck and Choi, Jong and Di, Sheng and Di, Zichao and Gok, Ali M and Guo, Hanqi and Huck, Kevin A and others},
journal={The International Journal of High Performance Computing Applications},
volume={35},
number={6},
pages={617--635},
year={2021},
publisher={SAGE Publications Sage UK: London, England}
}

@inproceedings{ge_procams05,
author = "Jinghua Ge and Daniel Sandin and Tom Peterka and Todd Margolis and Thomas DeFanti",
title = "Camera Based Automatic Calibration for the VarrierTM System",
booktitle = "Proceedings of IEEE International Workshop on Projector-Camera Systems 2005",
year = "2005"
}

@inproceedings{ge_vrcia06,
author = "Jinghua Ge and Daniel Sandin and Andrew Johnson and Tom Peterka and Robert Kooima and Javier Girado and Thomas DeFanti",
title = "Point-based VR Visualization for Large-Scale Scientific Datasets by Real-Time Remote Computation",
booktitle = "Proceedings of ACM VRCIA 2006 Conference",
year = "2006"
}

@article{ge_ijig08,
author = "Jinghua Ge and Daniel Sandin and Tom Peterka and Robert Kooima and Javier Girado and Andrew Johnson",
title = "A Point-based Asynchronous Remote Visualization Framework for Real-time Virtual Reality",
journal = "International Journal of Images and Graphics",
volume = "8",
number = "2",
year = "2008",
pages = "189--207"
}

@inproceedings{girado_vr07,
author = "Javier Girado and Tom Peterka and Robert Kooima and and Jinghua Ge and Daniel Sandin and Andrew Johnson and Jason Leigh and Thomas DeFanti",
title = "Real Time Neural Network-based Face Tracker for VR Displays",
booktitle = "Proceedings of IEEE Virtual Reality 2007",
address = "Charlotte NC",
year = "2007"
}

@inproceedings{grindeanu_cluster19,
title={{Scalable, High-Order Continuity Across Block Boundaries of Functional Approximations Computed in Parallel}},
author={Grindeanu, Iulian and Peterka, Tom and Mahadevan, Vijay S and Nashed, Youssef SG},
booktitle={2019 IEEE International Conference on Cluster Computing (CLUSTER)},
pages={1--9},
year={2019},
organization={IEEE}
}

@article{gu_vis15,
title={Mining Graphs for Understanding Time-Varying Volumetric Data},
author={Gu, Yi and Wang, Chaoli and Peterka, Tom and Jacob, Robert and Kim, Seung Hyun},
journal={Visualization and Computer Graphics, IEEE Transactions on},
volume={22},
number={1},
pages={965--974},
year={2016},
publisher={IEEE}
}

@article{guhur_europar16,
title={Lightweight and Accurate Silent Data Corruption Detection in Ordinary Differential Equation Solvers},
author={Guhur, Pierre-Louis and Zhang, Hong and Peterka, Tom and Constantinescu, Emil and Cappello, Franck},
year={2016},
booktitle={Proceedings of Euro-Par 2016},
location={Grenoble, France}
}

@inproceedings{guhur_cluster17,
title={{Detection of Silent Data Corruption in Adaptive Numerical Integration Solvers}},
author={Guhur, Pierre-Louis and Constantinescu, Emil and Ghosh, Debojyoti and Peterka, Tom and Cappello, Franck},
booktitle={Cluster Computing (CLUSTER), 2017 IEEE International Conference on},
pages={592--602},
year={2017},
organization={IEEE}
}

@article{guo_vis15,
title={{Extracting, Tracking, and Visualizing Magnetic Flux Vortices in 3D}},
author={Guo, Hanqi and Phillips, Carolyn and Peterka, Tom and Karpeyev, Dmitry and Glatz, Andreas},
journal = {IEEE Transactions on Visualization and Computer Graphics},
publisher={IEEE},
year={2016}
}

@inproceedings{guo_pacvis16,
title={{Finite-Time Lyanpunov Exponents and Lagrangian Coherent Structures in Uncertain Unsteady Flows}},
author={Hanqi Guo and Wenbin He and Tom Peterka and Han-Wei Shen and Scott Collis and Jonathan Helmus},
booktitle = {Transactions on Visualization and Computer Graphics (TVCG) Proceedings of Pacific Vis 2016},
publisher={IEEE},
year={2016}
}

@inproceedings{guo_pacvis17,
title={{In Situ Magnetic Flux Vortex Visualization in Time-Dependent Ginzburg-Landau Superconductor Simulations}},
author={Guo, Hanqi and Peterka, Tom and Glatz, Andreas},
booktitle={Pacific Visualization Symposium (PacificVis), 2017 IEEE},
pages={71--80},
year={2017},
organization={IEEE}
}

@inproceedings{guo_egpgv18,
title={{La VALSE: Scalable Log Visualization for Fault Characterization in Supercomputers}},
author={Guo, Hanqi and Di, Sheng and Gupta, Rinku and Peterka, Tom and Cappello, Franck},
booktitle={EGPGV},
pages={91--100},
year={2018}
}

@article{guo_tvcg18,
title={{Extreme-Scale Stochastic Particle Tracing for Uncertain Unsteady Flow Visualization and Analysis}},
author={Guo, Hanqi and He, Wenbin and Seo, Sangmin and Shen, Han-Wei and Constantinescu, Emil and Liu, Chunhui and Peterka, Tom},
journal={IEEE transactions on visualization and computer graphics},
year={2018},
publisher={IEEE}
}

@article{guo_tvcg21,
title={{FTK: A High-Dimensional Simplicial Meshing Framework for Robust and Scalable Feature Tracking}},
author={Guo, Hanqi and Lenz, David and Xu, Jiayi and Liang, Xin and He, Wenbin and Grindeanu, Iulian R and Shen, Han-Wei and Peterka, Tom and Munson, Todd and Foster, Ian},
journal={arXiv e-prints},
pages={arXiv--2011},
year={2020}
}

@inproceedings{guo_vis21,
title={{Exact Analytical Parallel Vectors}},
author={Guo, Hanqi and Peterka, Tom},
booktitle={2021 IEEE Visualization Conference (VIS)},
pages={101--105},
year={2021},
organization={IEEE}
}

@inproceedings{gyulassy_ipdps12,
author = "Attila Gyulassy and Tom Peterka and Valerio Pascucci and Robert Ross",
title = "Characterizing the Parallel Computation of Morse-Smale Complexes",
booktitle = "Proceedings of IPDPS '12",
address = "Shanghai, China",
year = "2012"
}

@inproceedings{habib_sc12,
author = "Salman Habib and Vitaly Morozov and Hal Finkel and Adrian Pope and Katrin Heitmann and Kalyan Kumaran and Tom Peterka and Joe Insley and D. Daniel and Pat Fasel and Nick Frontiere and Z. Lukic",
title = "{The Universe at Extreme Scale: Multi-Petaflop Sky Simulation on the BG/Q}",
booktitle = "Proceedings of SC12",
address = "Salt Lake City, UT",
year = "2012"
}

@article{habib_na15,
title={{HACC: Simulating Sky Surveys on State-of-the-Art Supercomputing Architectures}},
author={Habib, Salman and Pope, Adrian and Finkel, Hal and Frontiere, Nicholas and Heitmann, Katrin and Daniel, David and Fasel, Patricia and Morozov, Vitali and Zagaris, George and Peterka, Tom and others},
journal={New Astronomy},
year={2015}
}

@article{habib_cacm17,
title={{HACC: Extreme Scaling and Performance Across Diverse Architectures}},
author={Habib, Salman and Morozov, Vitali and Frontiere, Nicholas and Finkel, Hal and Pope, Adrian and Heitmann, Katrin and Kumaran, Kalyan and Vishwanath, Venkatram and Peterka, Tom and Insley, Joe and others},
journal={Communications of the ACM},
volume={60},
number={1},
pages={97--104},
year={2017},
publisher={ACM}
}

@inproceedings{he_ldav18,
title={{Parallel Partial Reduction for Large-Scale Data Analysis and Visualization}},
author={He, Wenbin and Guo, Hanqi and Peterka, Tom and Di, Sheng and Cappello, Franck and Shen, Han-Wei},
booktitle={Proceedings of 2018 IEEE Symposium on Large Data Analysis and Visualization},
year={2018}
}

@article{he_tvcg20,
title={{eFESTA: Ensemble Feature Exploration with Surface Density Estimates}},
author={He, Wenbin and Guo, Hanqi and Shen, Han-Wei and Peterka, Tom},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2020},
publisher={IEEE}
}

@article{he_vis19,
title={{InSituNet: Deep Image Synthesis for Parameter Space Exploration of Ensemble Simulations}},
author={He, Wenbin and Wang, Junpeng and Guo, Hanqi and Wang, Ko-Chih and Shen, Han-Wei and Raj, Mukund and Nashed, Youssef SG and Peterka, Tom},
journal={IEEE Transactions on Visualization and Computer Graphics},
volume={26},
number={1},
pages={23--33},
year={2019},
publisher={IEEE}
}

@article{he_visualinfo20,
title={{CECAV-DNN: Collective Ensemble Comparison and Visualization using Deep Neural Networks}},
author={He, Wenbin and Wang, Junpeng and Guo, Hanqi and Shen, Han-Wei and Peterka, Tom},
journal={Visual Informatics},
year={2020},
publisher={Elsevier}
}

@article{heitmann_cise14,
title={{Large Scale Simulations of Sky Surveys}},
author={Heitmann, Katrin and Habib, Salman and Finkel, Hal and Frontiere, Nicholas and Pope, Adrian and Morozov, Vitali and Rangel, Esteban and Kovacs, Eve and Kwan, Juliana and Nan, Li and others},
year={2014},
publisher={IEEE}
}

@inproceedings{hobson_ccgrid21,
title={{Shared-Memory Communication for Containerized Workflows}},
author={Hobson, Tanner and Yildiz, Orcun and Nicolae, Bogdan and Huang, Jian and Peterka, Tom},
booktitle={CCGrid'21: The 21th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing},
year={2021}
}

@inproceedings{hong_sc09,
author = "Yuan Hong and Tom Peterka and Han-Wei Shen",
title = "Histogram-based I/O Optimization for Visualizing Large-scale Data",
booktitle = "Proceedings of SC 09 Ultrascale Visualization Workshop",
address = "Portland OR",
year = "2009"
}

@inproceedings{imre_isvc19,
title={{ContourNet: Salient Local Contour Identification for Blob Detection in Plasma Fusion Simulation Data}},
author={Imre, Martin and Han, Jun and Dominski, Julien and Churchill, Michael and Kube, Ralph and Chang, Choong-Seock and Peterka, Tom and Guo, Hanqi and Wang, Chaoli},
booktitle={International Symposium on Visual Computing},
pages={289--301},
year={2019},
organization={Springer}
}

@article{jenkins_tpds13,
title={{Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data}},
author={Jenkins, John and Dinan, James and Balaji, Pavan and Peterka, Tom and Samatova, N and Thakur, Rajeev},
journal={IEEE Transactions on Parallel and Distributed Systems},
pages={1},
year={2013},
publisher={IEEE}
}

@inproceedings{kendall_sc09,
author = "Wesley Kendall and Markus Glatter and Jian Huang and Tom Peterka and Robert Latham and Robert Ross",
title = "Terascale Data Organization for Discovering Multivariate Climatic Trends",
booktitle = "Proceedings of SC 09",
address = "Portland OR",
year = "2009"
}

@inproceedings{kendall_egpgv10,
author = "Wesley Kendall and Tom Peterka and Jian Huang and Han-Wei Shen and Robert Ross",
title = "Accelerating and Benchmarking Radix-k Image Compositing at Large Scale",
booktitle = "Proceedings of Eurographics Symposium on Parallel Graphics and Visualization EG PGV'10",
address = "Norrkoping, Sweden",
year = "2010"
}

@article{kendall_scidac10,
author = "Wesley Kendall and Markus Glatter and Jian Huang and Tom Peterka and Rob Latham and Robert Ross",
title = "Expressive Feature Characterization for Ultrascale Data Visualization",
journal = "Journal of Physics",
year = "2010"
}

@article{kendall_cga11,
author = "Wesley Kendall and Jian Huang and Tom Peterka and Rob Latham and Robert Ross",
title = "Visualization Viewpoint: Towards a General I/O Layer for Parallel Visualization Applications",
journal = "IEEE Computer Graphics and Applications",
volume = "31",
number = "6",
date = "November / December",
year = "2011"
}

@article{kendall_cga12,
author = "Wesley Kendall and Jian Huang and Tom Peterka",
title = "Geometric Quantification of Features in Large Unsteady Flow",
journal = "IEEE Computer Graphics and Applications",
volume = "32",
number = "4",
year = "2012"
}

@inproceedings{kendall_sc11,
author = "Wesley Kendall and Jingyuan Wang and Melissa Allen and Tom Peterka and Jian Huang and David Erickson",
title = "Simplified Parallel Domain Traversal",
booktitle = "Proceedings of SC11",
address = "Seattle, WA",
year = "2011"
}

@article{knoll_scidac11,
author = "Aaron Knoll and Tom Peterka and Mark Hereld and Michael E. Papka and Bin Liu and Maria Chan and Jeff Greeley",
title = "A Volumetric Framework for Registration, Analysis, and Visualization of Nanostructured Materials",
journal = "Journal of Physics",
year = "2011"
}

@inproceedings{kooima_vr07,
author = "Robert Kooima and Tom Peterka and Javier Girado and Jinghua Ge and Daniel Sandin and Thomes DeFanti",
title = "A GPU Sub-pixel Algorithm for Autostereoscopic Virtual Reality",
booktitle = "Proceedings of IEEE Virtual Reality 2007",
address = "Charlotte, NC",
year = "2007"
}

@conference{kumar_pdsw10,
title = "Towards Parallel Access of Multi-dimensional, Multiresolution Scientific Data",
author = "Sidharth Kumar and Valerio Pascucci and Venkatram Vishwanath and Philip Carns and Robert Latham and Tom Peterka and Michael Papka and Robert Ross",
booktitle = "Proceedings of 2010 Petascale Data Storage Workshop",
month = "November",
year = "2010"
}

@inproceedings{liang_pacvis20,
title={{Toward Feature-Preserving 2D and 3D Vector Field Compression}},
author={Liang, Xin and Guo, Hanqi and Di, Sheng and Cappello, Franck and Raj, Mukund and Liu, Chunhui and Ono, Kenji and Chen, Zizhong and Peterka, Tom},
booktitle={PacificVis},
pages={81--90},
year={2020}
}

@article{liang_tvcg22,
title={{Toward Feature-Preserving Vector Field Compression}},
author={Liang, Xin and Di, Sheng and Cappello, Franck and Raj, Mukund and Liu, Chunhui and Ono, Kenji and Chen, Zizhong and Peterka, Tom and Guo, Hanqi},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2022},
publisher={IEEE}
}

@article{leigh_fgcs06,
author = "Jason Leigh and Luc Renambot and Andrew Johnson and Byungil Jeong and Ratko Jagodic and Nicholas Schwarz and Dmitry Svistula and Rajvikram Singh and Julieta Aguilera and Xi Wang and Venkatram Vishwanath and Brenda Lopez and Dan Sandin and Tom Peterka and Javier Girado and Robert Kooima and Jinghua Ge and Lance Long and Alan Verlo and Thomas A. DeFanti and Maxine Brown and Donna Cox and Robert Patterson and Patrick Dorn and Paul Wefel and Stuart Levy and Jonas Talandis and Joe Reitzer and Tom Prudhomme and Tom Coffin and Brian Davis and Paul Wielinga and Bram Stolk and Gee Bum Koo and Jaeyoun Kim and Sangwoo Han and Jong Won Kim and Brian Corrie and Todd Zimmerman and Pierre Boulanger and Manuel Garcia",
title = "The global lambda visualization facility: an international ultra-high-definition wide-area visualization collaboratory",
journal = "Future Generation Computing Systems",
volume = "22",
number = "8",
year = "2006",
pages = "964--971"
}

@inproceedings{leigh_isuc07,
author = "J. Leigh and A. Johnson and L. Renambot and D. Sandin and T. DeFanti and M. Brown and B. Jeong and R. Jagodic and C. Krumholz and D. Svistula and H. Hur and R. Kooima and T. Peterka and J. Ge and C. Falk",
title = "Emerging from the CAVE: Collaboration in Ultra High Resolution Environments",
booktitle = "Proceedings of First International Symposium on Universal Communication 2007",
address = "Kyoto, Japan",
year = "2007"
}

@article{leigh_ieeeproc12,
author = "Jason Leigh and Andrew Johnson and Luc Renambot and Tom Peterka and Byungil Jeong and Daniel J. Sandin and Jonas Talandis and Ratko Jagodic and Sungwon Nam and Hyejung Hur and Yiwen Sun",
title = "Scalable Resolution Display Walls",
journal = "Proceedings of the IEEE",
date = "May",
year = "2012"
}

@article{lenz_iccs22,
title={{Adaptive Regularization of B-Spline Models for Scientific Data}},
author={Lenz, David and Yeh, Raine and Mahadevan, Vijay and Grindeanu, Iulian and Peterka, Tom},
journal={arXiv preprint arXiv:2203.12730},
year={2022}
}

@article{lenz_jcs23,
title={{Customizable Adaptive Regularization Techniques for B-Spline Modeling}},
author={Lenz, David and Yeh, Raine and Mahadevan, Vijay and Grindeanu, Iulian and Peterka, Tom},
journal={Journal of Computational Science},
volume={71},
pages={102037},
year={2023},
publisher={Elsevier}
}

@article{lenz_matcom23,
title={{Fourier-Informed Knot Placement Schemes for B-Spline Approximation}},
author={Lenz, David and Marin, Oana and Mahadevan, Vijay and Yeh, Raine and Peterka, Tom},
journal={Mathematics and Computers in Simulation},
volume={213},
pages={374--393},
year={2023},
publisher={Elsevier}
}

@inproceedings{lu_sc14,
title={{Scalable Computation of Stream Surfaces on Large Scale Vector Fields}},
author={Lu, Kewei and Shen, Han-Wei and Peterka, Tom},
booktitle={Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis},
pages={1008--1019},
year={2014},
organization={IEEE Press}
}

@article{mahadevan_jcs24,
title={{Accelerating Multivariate Functional Approximation Computation with Domain Decomposition Techniques}},
author={Mahadevan, Vijay and Lenz, David and Grindeanu, Iulian and Peterka, Thomas},
journal={Journal of Computational Science},
pages={102268},
year={2024},
publisher={Elsevier}
}

@inproceedings{mahadevan_iccs23,
title={{Accelerating Multivariate Functional Approximation Computation with Domain Decomposition Techniques}},
author={Mahadevan, Vijay and Lenz, David and Grindeanu, Iulian and Peterka, Thomas},
booktitle={International Conference on Computational Science},
year={2023},
organization={Springer}
}

@article{manna_ncomms22,
title={{Learning in Continuous Action Space for Developing High Dimensional Potential Energy Models}},
author={Manna, Sukriti and Loeffler, Troy D and Batra, Rohit and Banik, Suvo and Chan, Henry and Varughese, Bilvin and Sasikumar, Kiran and Sternberg, Michael and Peterka, Tom and Cherukara, Mathew J and others},
journal={Nature communications},
volume={13},
number={1},
pages={1--10},
year={2022},
publisher={Nature Publishing Group}
}

@inproceedings{mommessin_cluster17,
title={{Automatic Data Filtering for In Situ Workflows}},
author={Mommessin, Cl{\'e}ment and Dreher, Matthieu and Raffin, Bruno and Peterka, Tom},
booktitle={Cluster Computing (CLUSTER), 2017 IEEE International Conference on},
pages={370--378},
year={2017},
organization={IEEE}
}

@inproceedings{moreland_sc11,
author = "Ken Moreland and Wesley Kendall and Tom Peterka and Jian Huang",
title = "An Image Compositing Solution at Scale",
booktitle = "Proceedings of SC11",
address = "Seattle, WA",
year = "2011"
}

@article{morozov_ldav16,
author = "Dmitriy Morozov and Tom Peterka",
title = "Block-Parallel Data Analysis with DIY2",
booktitle = "Proceedings of the 2016 IEEE Large Data Analysis and Visualization Symposium LDAV'16",
address = "Baltimore, MD",
year = "2016",
}

@inproceedings{morozov_sc16,
title={{Efficient Delaunay Tessellation through K-D Tree Decomposition}},
author={Dmitriy Morozov and Tom Peterka},
booktitle={Proceedings of SC16},
year={2016},
organization={IEEE Press},
}

@inproceedings{morozov_ldav21,
title={{IExchange: Asynchronous Communication and Termination Detection for Iterative Algorithms}},
author={Morozov, Dmitriy and Peterka, Tom and Guo, Hanqi and Raj, Mukund and Xu, Jiayi and Shen, Han-Wei},
booktitle={2021 IEEE 11th Symposium on Large Data Analysis and Visualization (LDAV)},
pages={12--21},
year={2021},
organization={IEEE}
}

@article{nashed_oe14,
title={{Parallel Ptychographic Reconstruction}},
author={Nashed, Youssef SG and Vine, David J and Peterka, Tom and Deng, Junjing and Ross, Rob and Jacobsen, Chris},
journal={Optics Express},
volume={22},
number={26},
pages={32082--32097},
year={2014},
publisher={Optical Society of America}
}

@article{nashed_iccs17,
title={{Distributed Automatic Differentiation for Ptychography}},
author={Nashed, Youssef SG and Peterka, Tom and Deng, Junjing and Jacobsen, Chris},
journal={Procedia Computer Science},
volume={108},
pages={404--414},
year={2017},
publisher={Elsevier}
}

@inproceedings{nashed_iccs19,
title={{Rational Approximation of Scientific Data}},
author={Nashed, Youssef SG and Peterka, Tom and Mahadevan, Vijay and Grindeanu, Iulian},
booktitle={International Conference on Computational Science},
pages={18--31},
year={2019},
organization={Springer}
}

@inproceedings{nicolae_ccgrid22,
title={{Towards Low-Overhead Resilience for Data Parallel Deep Learning}},
author={Nicolae, Bogdan and Hobson, Tanner and Yildiz, Orcun and Peterka, Tom and Morozov, Dmitry},
booktitle={CCGrid'22: The 22nd IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing},
year={2022}
}

@inproceedings{nouanesengsy_sc12,
author = "Boonthanome Nouanesengsy and Teng-Yok Lee and Kewei Lu and Han-Wei Shen and Tom Peterka",
title = "{Parallel Parrticle Advection and FTLE Computation for Time-Varying Flow Fields}",
booktitle = "Proceedings of SC12",
address = "Salt Lake City, UT",
year = "2012"
}

@book{peterka_thesis03,
author = "Tom Peterka",
title = "Scientific Visualization of N-Dimensional Attainable Regions",
note = "M.S. Thesis",
address = "University of Illinois at Chicago, Chicago IL",
year = "2003"
}

@article{peterka_fgcs06,
author = "Tom Peterka and Daniel Sandin and Jinghua Ge and Javier Girado and Robert Kooima and Jason Leigh and Andrew Johnson and Marcus Thiebaux and Thomas DeFanti",
title = "Personal Varrier: Autostereoscopic Virtual Reality for Distributed Scientific Visualization",
journal = "Future Generation Computing Systems",
volume = "22",
pages = "964-971",
year = "2006"
}

@book{peterka_dissertation07,
author = "Tom Peterka",
title = "Dynallax: Dynamic Parallax Barrier Autostereoscopic Display",
note = "Ph.D. Dissertation",
address = "University of Illinois at Chicago, Chicago IL",
year = "2007"
}

@inproceedings{peterka_spie07,
author = "Tom Peterka and Robert Kooima and Javier Girado and Jinghua Ge and Daniel Sandin and Thomas DeFanti",
title = "Evolution of the Varrier Autostereoscopic VR Display",
booktitle = "Proceedings of IS\&T / SPIE Electronic Imaging 2007",
address = "San Jose, CA",
year = "2007"
}

@inproceedings{peterka_vr07,
author = "Tom Peterka and Robert Kooima and Javier Girado and Jinghua Ge and Daniel Sandin and Andrew Johnson and Jason Leigh and Jurgen Schulze and Thomas DeFanti",
title = "Dynallax: Solid State Dynamic Barrier Autostereoscopic VR Display",
booktitle = "Proceedings of IEEE Virtual Reality 2007",
address = "Charlotte, NC",
year = "2007"
}

@article{peterka_tvcg08,
author = "Tom Peterka and Robert Kooima and Daniel Sandin and Andrew Johnson and Jason Leigh and Thomas DeFanti",
title = "Advances in the Dynallax Solid-State Dynamic Parallax Barrier Autostereoscopic Visualization Display System",
journal = "IEEE Transactions on Visualization and Computer Graphics",
volume = "14",
number = "3",
pages = "487-499",
year = "2008"
}

@inproceedings{peterka_egpgv08,
author = "Tom Peterka and Hongfeng Yu and Robert Ross and Kwan-Liu Ma",
title = "Parallel Volume Rendering on the IBM Blue Gene/P",
booktitle = "Proceedings of Eurographics Parallel Graphics and Visualization Symposium 2008",
address = "Crete, Greece",
year = "2008"
}

@inproceedings{peterka_sc08,
author = "Tom Peterka and Robert Ross and Hongfeng Yu and Kwan-Liu Ma and Wesley Kendall and Jian Huang",
title = "Assessing Improvements in the Parallel Volume Rendering Pipeline at Large Scale",
booktitle = "Proceedings of SC 08 Ultrascale Visualization Workshop",
address = "Austin TX",
year = "2008"
}

@inproceedings{peterka_sc09,
author = "Tom Peterka and David Goodell and Robert Ross and Han-Wei Shen and Rajeev Thakur",
title = "A Configurable Algorithm for Parallel Image-Compositing Applications",
booktitle = "Proceedings of SC 09",
address = "Portland OR",
year = "2009"
}

@article{peterka_scidac09,
author = "Tom Peterka and Robert Ross and Han-Wei Shen and Kwan-Liu Ma and Wesley Kendall and Hongfeng Yu",
title = "Parallel Visualization on Leadership Computing Resources",
journal = "Journal of Physics",
year = "2009"
}

@inproceedings{peterka_icpp09,
author = "Tom Peterka and Hongfeng Yu and Robert Ross and Kwan-Liu Ma and Rob Latham",
title = "End-to-End Study of Parallel Volume Rendering on the IBM Blue Gene/P",
booktitle = "Proceedings of ICPP 09",
address = "Vienna, Austria",
year = "2009"
}

@inproceedings{peterka_spie09,
author = "Tom Peterka and Robert Ross and Hongfeng Yu and Kwan-Liu Ma and Robert Kooima and Javier Girado",
title = "Autostereoscopic Display of Large-Scale Scientific Visualization",
booktitle = "Proceedings of IS\&T / SPIE Electronic Imaging 2009",
address = "San Jose, CA",
year = "2009"
}

@article{peterka_scidac10,
author = "Tom Peterka and Wesley Kendall and David Goodell and Boonthanome Nouanesengsey and Han-Wei Shen and Jian Huang and Kenneth Moreland and Rajeev Thakur and Robert Ross",
title = "Performance of Communication Patterns for Extreme-Scale Analysis and Visualization",
journal = "Journal of Physics",
year = "2010"
}

@inproceedings{peterka_ldav11,
author = "Tom Peterka and Robert Ross and Wesley Kendall and Attila Gyulassy and Valerio Pascucci and Han-Wei Shen and Teng-Yok Lee and Abon Chaudhuri",
title = "Scalable Parallel Building Blocks for Custom Data Analysis",
booktitle = "Proceedings of Large Data Analysis and Visualization Symposium LDAV'11",
address = "Providence, RI",
year = "2011"
}

@inproceedings{peterka_ipdps11,
author = "Tom Peterka and Robert Ross and Boonthanome Nouanesengsey and Teng-Yok Lee and Han-Wei Shen and Wesley Kendall and Jian Huang",
title = "A Study of Parallel Particle Tracing for Steady-State and Time-Varying Flow Fields",
booktitle = "Proceedings of IPDPS 11",
address = "Anchorage AK",
year = "2011"
}

@inproceedings{peterka_sc12,
author = "Tom Peterka and Juliana Kwan and Adrian Pope and Hal Finkel and Katrin Heitmann and Salman Habib and Jingyuan Wang and George Zagaris",
title = "Meshing the Universe: Integrating Analysis in Cosmological Simulations",
booktitle = "Proceedings of SC12 Ultrascale Visualization Workshop",
address = "Salt Lake City, UT",
year = "2012"
}

@inproceedings{peterka_imudi12,
author = "Tom Peterka and Robert B. Ross",
title = "Versatile Communication Algorithms for Data Analysis",
booktitle = "EuroMPI Special Session on Improving MPI User and Developer Interaction IMUDI'12",
address = "Vienna, AT",
year = "2012"
}

@incollection{peterka_hpv12,
author = "Tom Peterka and Kwan-Liu Ma",
title = "Parallel Image Compositing Methods",
booktitle = "High Performance Visualization: Enabling Extreme Scale Scientific Insight",
editor = "E. Wes Bethel and Hank Childs and Charles Hansen",
publisher = "CRC Press",
year = "2012"
}

@inproceedings{peterka_sc14,
title={{High-Performance Computation of Distributed-Memory Parallel 3D Voronoi and Delaunay Tessellation}},
author={Peterka, Tom and Morozov, Dmitriy and Phillips, Carolyn},
booktitle={Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis},
pages={997--1007},
year={2014},
organization={IEEE Press}
}

@article{peterka_siam15,
title={{Self-Adaptive Density Estimation of Particle Data}},
author={Tom Peterka and Hadrien Croubois and Nan Li and Steve Rangel and Franck Cappello},
journal={SIAM Journal on Scientific Computing SISC Special Edition on CSE'15: Software and Big Data},
year={2016}
}

@inproceedings{peterka_ldav18,
title={{Foundations of Multivariate Functional Approximation for Scientific Data}},
author={Peterka, Tom and Nashed, Youssef and Grindeanu, Iulian and Mahadevan, Vijay and Yeh, Raine and Trixoche, Xavier},
booktitle={Proceedings of 2018 IEEE Symposium on Large Data Analysis and Visualization},
year={2018}
}

@techreport{peterka_isdm19,
author={Tom Peterka and Deborah Bard and Janine Bennett and E. Wes Bethel and Ron Oldfield and Line Pouchard and Christine Sweeney and Matthew Wolf},
title={{ASCR Workshop on In Situ Data Management: Enabling Scientific Discovery from Diverse Data Sources}},
year={2019},
doi={10.2172/1493245}
}

@article{peterka_ijhpca20,
title={{Priority Research Directions for in Situ Data Management: Enabling Scientific Discovery from Diverse Data Sources}},
author={Peterka, Tom and Bard, Deborah and Bennett, Janine C and Bethel, E Wes and Oldfield, Ron A and Pouchard, Line and Sweeney, Christine and Wolf, Matthew},
journal={The International Journal of High Performance Computing Applications},
pages={1094342020913628},
year={2020},
publisher={SAGE Publications Sage UK: London, England}
}

@incollection{peterka_isvfsc22,
title={{Multivariate Functional Approximation of Scientific Data}},
author={Peterka, Tom and Nashed, Youssef and Grindeanu, Iulian and Mahadevan, Vijay and Yeh, Raine and Lenz, David},
booktitle={In Situ Visualization for Computational Science},
pages={375--397},
year={2022},
publisher={Springer}
}

@inproceedings{peterka_ipdps23,
title={{LowFive: In Situ Data Transport for High-Performance Workflows}},
author={Peterka, Tom and Morozov, Dmitriy and Nigmetov, Arnur and Yildiz, Orcun and Nicolae, Bogdan and Davis, Philip E},
booktitle={2023 IEEE International Parallel and Distributed Processing Symposium (IPDPS)},
pages={985--995},
year={2023},
organization={IEEE}
}

@inproceedings{peterka_ldav23,
title={{Towards Adaptive Refinement for Multivariate Functional Approximation of Scientific Data}},
author={Peterka, Tom and Lenz, David and Grindeanu, Iulian and Mahadevan, Vijay S},
booktitle={2023 IEEE 13th Symposium on Large Data Analysis and Visualization (LDAV)},
pages={32--41},
year={2023},
organization={IEEE}
}

@article{phatak_mam15,
title={Towards Multiresolution Phase Retrieval using Electron Ptychography},
author={Phatak, Charudatta and Nashed, Youssef and Peterka, Tom},
journal={Microscopy and Microanalysis},
volume={21},
number={S3},
pages={2151--2152},
year={2015},
publisher={Cambridge Univ Press}
}

@article{phillips_pre15,
title={Detecting vortices in superconductors: Extracting one-dimensional topological singularities from a discretized complex scalar field},
author={Phillips, Carolyn L and Peterka, Tom and Karpeyev, Dmitry and Glatz, Andreas},
journal={Physical Review E},
volume={91},
number={2},
pages={023311},
year={2015},
publisher={APS}
}

@article{phillips_pre16,
title={Tracking vortices in superconductors: Extracting singularities from a discretized complex scalar field evolving in time},
author={Phillips, Carolyn L and Guo, Hanqi and Peterka, Tom and Karpeyev, Dmitry and Glatz, Andreas},
journal={Physical Review E},
volume={93},
number={2},
pages={023305},
year={2016},
publisher={APS}
}

@incollection{pugmire_hpv12,
author = "Dave Pugmire and Tom Peterka and Christoph Garth",
title = "Parallel Integral Curves",
booktitle = "High Performance Visualization: Enabling Extreme Scale Scientific Insight",
editor = "E. Wes Bethel and Hank Childs and Charles Hansen",
publisher = "CRC Press",
year = "2012"
}

@inproceedings{rangel_cluster16,
title={{Parallel DTFE Surface Density Field Reconstruction}},
author={Esteban Rangel and Nan Li and Salman Habib and Tom Peterka and Ankit Agrawal and Wei-keng Liao and Alok Chowdhary},
booktitle={Proceedings of IEEE Cluster 2016},
year={2016},
organization={IEEE}
}

@article{ross_scidac08,
author = "Robert Ross and Tom Peterka and Han-Wei Shen and Yuan Hong and Kwan-Liu Ma and Hongfeng Yu and Kenneth Moreland",
title = "Visualization and Parallel I/O at Extreme Scale",
journal = "Journal of Physics",
year = "2008"
}

@article{sandin_siggraph05,
author = "Daniel Sandin and Todd Margolis and Jinghua Ge and Javier Girado and Tom Peterka and Thomas DeFanti",
title = "The Varrier Autostereoscopic Virtual Reality Display",
journal = "ACM Transactions on Graphics, Proceedings of ACM",
volume = "24",
number = "3",
pages = "894-903",
year = "2005"
}

@inproceedings{sewell_uv12,
author = {Sewell, Christopher and Meredith, Jeremy and Moreland, Kenneth and Peterka, Tom and DeMarle, Dave and Lo, Li-ta and Ahrens, James and Maynard, Robert and Geveci, Berk},
title = {{The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures}},
booktitle = {Proceedings of the 2012 SC Companion: High Performance Computing, Networking Storage and Analysis},
series = {SCC '12},
year = {2012},
isbn = {978-0-7695-4956-9},
pages = {206--214},
publisher = {IEEE Computer Society},
address = {Washington, DC, USA}
}

@inproceedings{sousa_chep18,
author = {Sousa, A. and Buchanan, N. and Calvez, S. and Ding, P. and Doyle, D. and Himmel, A. and Holtzman, B. and Kowalkowski, J. and Norman, A. and Peterka, T.},
title = {{Implementation of Feldman-Cousins Correction and Oscillation Calculations in the HPC Environment for the NOvA Experiment}},
booktitle = {Proceedings of the CHEP Conference},
year = {2018},
location = {Sofia, Bulgaria}
}

@article{sun_jov24,
title={{MFA-DVR: Direct Volume Rendering of MFA Models}},
author={Sun, Jianxin and Lenz, David and Yu, Hongfeng and Peterka, Tom},
journal={Journal of Visualization},
volume={27},
number={1},
pages={109--126},
year={2024},
publisher={Springer}
}

@inproceedings{sun_bigdata23,
title={{Scalable Volume Visualization for Big Scientific Data Modeled by Functional Approximation}},
author={Sun, Jianxin and Lenz, David and Yu, Hongfeng and Peterka, Tom},
booktitle={2023 IEEE International Conference on Big Data (BigData)},
pages={905--914},
year={2023},
organization={IEEE}
}

@inproceedings{woodring_uv13,
author = {Woodring, Jonathan and Ahrens, James and Tautges, Timothy J. and Peterka, Tom and Vishwanath, Venkatram and Geveci, Berk},
title = {{On-demand Unstructured Mesh Translation for Reducing Memory Pressure During in Situ Analysis}},
booktitle = {Proceedings of the 8th International Workshop on Ultrascale Visualization},
series = {UltraVis '13},
year = {2013},
location = {Denver, Colorado},
pages = {3:1--3:8},
publisher = {ACM},
address = {New York, NY, USA}
}

@article{wozniak_eurompi13,
title={{Dataflow Coordination of Data-Parallel Tasks via MPI 3.0}},
author={Wozniak, Justin M and Peterka, Tom and Armstrong, Timothy G and Dinan, James and Lusk, Ewing and Wilde, Michael and Foster, Ian},
year={2013},
booktitle={Proceedings of EuroMPI 2013},
location={Madrid, Spain}
}

@article{wurster_tvcg22,
title={{Deep Hierarchical Super Resolution for Scientific Data}},
author={Wurster, Skylar W and Guo, Hanqi and Shen, Han-Wei and Peterka, Tom and Xu, Jiayi},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2022},
publisher={IEEE}
}

@article{wurster_vis23,
title={{Adaptively Placed Multi-Grid Scene Representation Networks for Large-Scale Data Visualization}},
author={Wurster, Skylar W and Xiong, Tianyu and Shen, Han-Wei and Guo, Hanqi and Peterka, Tom},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2023},
publisher={IEEE}
}

@inproceedings{wurster_pacvis23,
title={{Neural Stream Functions}},
author={Wurster, Skylar W and Guo, Hanqi and Peterka, Tom and Shen, Han-Wei},
booktitle={2023 IEEE 16th Pacific Visualization Symposium (PacificVis)},
pages={132--141},
year={2023},
organization={IEEE}
}

@article{xu_tvcg21,
title={{Asynchronous and Load-Balanced Union-Find for Distributed and Parallel Scientific Data Visualization and Analysis}},
author={Xu, Jiayi and Guo, Hanqi and Shen, Han-Wei and Raj, Mukund and Wang, Xueyun and Xu, Xueqiao and Wang, Zhehui and Peterka, Tom},
journal={IEEE Transactions on Visualization and Computer Graphics},
volume={27},
number={6},
pages={2808--2820},
year={2021},
publisher={IEEE}
}

@article{xu_tvcg22,
title={{Reinforcement Learning for Load-balanced Parallel Particle Tracing}},
author={Xu, Jiayi and Guo, Hanqi and Shen, Han-Wei and Raj, Mukund and Wurster, Skylar Wolfgang and Peterka, Tom},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2022},
publisher={IEEE}
}

@article{yan_vis23,
title={{TROPHY: A Topologically Robust Physics-Informed Tracking Framework for Tropical Cyclones}},
author={Yan, Lin and Guo, Hanqi and Peterka, Thomas and Wang, Bei and Wang, Jiali},
journal={IEEE Transactions on Visualization and Computer Graphics},
year={2023},
publisher={IEEE}
}

@article{yeh_cad20,
title={{Fast Automatic Knot Placement Method for Accurate B-spline Curve Fitting}},
author={Yeh, Raine and Nashed, Youssef SG and Peterka, Tom and Tricoche, Xavier},
journal={Computer-Aided Design},
volume={128},
pages={102905},
year={2020},
publisher={Elsevier}
}

@article{yildiz_cise19,
title={{Heterogeneous Hierarchical Workflow Composition}},
author={Yildiz, Orcun and Ejarque, Jorge and Chan, Henry and Sankaranarayanan, Subramanian and Badia, Rosa M and Peterka, Tom},
journal={Computing in Science \& Engineering},
year={2019},
publisher={IEEE}
}

@inproceedings{yildiz_works21,
title={{Dynamic Heterogeneous Task Specification and Execution for In Situ Workflows}},
author={Yildiz, Orcun and Morozov, Dmitriy and Nicolae, Bogdan and Peterka, Tom},
booktitle={2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS)},
pages={25--32},
year={2021},
organization={IEEE}
}

@incollection{yildiz_isvfcs22,
title={{Decaf: Decoupled Dataflows for In Situ Workflows}},
author={Yildiz, Orcun and Dreher, Matthieu and Peterka, Tom},
booktitle={In Situ Visualization for Computational Science},
pages={137--158},
year={2022},
publisher={Springer}
}

@inproceedings{yildiz_ai4s22,
title={{Automated Continual Learning of Defect Identification in Coherent Diffraction Imaging}},
author={Yildiz, Orcun and Raghavan, Krishnan and Judge, William and Cherukara, Mathew and Balaprakash, Prasanna and Sankaranarayanan, Subramanian and Peterka, Tom},
booktitle={2022 IEEE Workshop on AI for Science (AI4S)},
year={2022},
organization={IEEE}
}

@article{yildiz_arxiv24,
title={{Wilkins: HPC In Situ Workflows Made Easy}},
author={Yildiz, Orcun and Morozov, Dmitriy and Nigmetov, Arnur and Nicolae, Bogdan and Peterka, Tom},
journal={arXiv preprint arXiv:2404.03591},
year={2024}
}

@article{zhang_vis17,
title={{Dynamic Load Balancing Based on Constrained KD Tree Decomposition for Parallel Particle Tracing}},
author={Zhang, Jiang and Guo, Hanqi and Hong, Fan and Yuan, Xiaoru and Peterka, Tom},
journal={IEEE Transactions on Visualization and Computer Graphics},
volume={24},
number={1},
pages={954--963},
year={2017},
publisher={IEEE}
}

@inproceedings{zhang_pacvis18,
title={{Dynamic Data Repartitioning for Load-Balanced Parallel Particle Tracing}},
author={Zhang, Jiang and Guo, Hanqi and Yuan, Xiaoru and Peterka, Tom},
booktitle={Pacific Visualization Symposium (PacificVis), 2018 IEEE},
pages={86--95},
year={2018},
organization={IEEE}
}

@article{zhang_tbd21,
title={{A Multi-branch Decoder Network Approach to Adaptive Temporal Data Selection and Reconstruction for Big Scientific Simulation Data}},
author={Zhang, Yang and Guo, Hanqi and Shang, Lanyu and Wang, Dong and Peterka, Tom},
journal={IEEE Transactions on Big Data},
year={2021},
publisher={IEEE}
}