PushParMeshIntoMoabF90.F90

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! PushParMeshIntoMoabF90: push parallel mesh into moab, F90 version
! 
! This program shows how to push a mesh into MOAB in parallel from Fortran90, with sufficient
! information to resolve boundary sharing and exchange a layer of ghost information.
! To successfully link this example, you need to specify FCFLAGS that include:
!    a) -DMOAB_HAVE_MPI, and
!    b) flags required to link Fortran90 MPI programs with the C++ compiler; these flags
!       can often be found on your system by inspecting the output of 'mpif90 -show'
! For example, using gcc, the link line looks like:
!   make MOAB_DIR=<moab install dir> FCFLAGS="-DMOAB_HAVE_MPI -I/usr/lib/openmpi/include -pthread -I/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl" PushParMeshIntoMoabF90
!
! Usage: PushParMeshIntoMoab
#define ERROR(rval) if (0 .ne. rval) call exit(1)
 
program pushparmeshintomoab
 
  use iso_c_binding
  implicit none
 
#include "moab/MOABConfig.h"
#ifdef MOAB_HAVE_MPI
#  include "mpif.h"
#  include "iMeshP_f.h"
#else
#  include "iMesh_f.h"
#endif
 
  ! declarations
  ! imesh is the instance handle
  imesh_instance imesh
  ! NUMV, NUME, NVPERE are the hardwired here; these are for the whole mesh,
  ! local mesh determined later
  integer numv, nume, nvpere
  parameter(numv = 8)   ! # vertices in whole mesh
  parameter(nume = 6)   ! # elements in whole mesh
  parameter(nvpere = 4) ! # vertices per element
  ! ents, verts will be arrays storing vertex/entity handles
  ibase_entityhandle, pointer :: ents(:), verts(:)
  ibase_entitysethandle root_set
  TYPE(c_ptr) :: vertsptr, entsptr
  ! storage for vertex positions, element connectivity indices, global vertex ids
  real*8 coords(0:3*numv-1)
  integer iconn(0:4*nume-1), gids(0:numv-1)
  !
  ! local variables
  integer lgids(0:numv-1), lconn(0:4*nume-1)
  real*8 lcoords(0:3*numv-1)
  integer lnumv, lvids(0:numv-1), gvids(0:numv-1)
  integer lvpe, ltp ! lvpe = # vertices per entity, ltp = element type
  integer ic, ie, iv, istart, iend, ierr, indv, lnume, rank, sz
 
#ifdef MOAB_HAVE_MPI
  ! local variables for parallel runs
  imeshp_partitionhandle imeshp
!    integer MPI_COMM_WORLD
#endif
 
  ! vertex positions, cube; side 2
  ! (first index varying fastest)
  data coords / &
       -1., -1., -1,  1., -1., -1.,  1., 1., -1.,  -1., 1., -1., &
       -1., -1.,  1,  1., -1.,  1.,  1., 1.,  1.,  -1., 1.,  1. /
 
  ! quad index numbering, each quad ccw, sides then bottom then top
  data iconn / & 
       0, 1, 5, 4,  & 
       1, 2, 6, 5,  & 
       2, 3, 7, 6,  & 
       3, 0, 4, 7,  & 
       0, 3, 2, 1,  & 
       4, 5, 6, 7 /
 
  data lvpe /4/ ! quads in this example
  data ltp / imesh_quadrilateral / ! from iBase_f.h
 
  ! initialize global vertex ids
  do iv = 0, numv-1
     lgids(iv) = iv+1
  end do
 
#ifdef MOAB_HAVE_MPI
  ! init the parallel partition
  call mpi_init(ierr)
  call mpi_comm_size(mpi_comm_world, sz, ierr)
  call mpi_comm_rank(mpi_comm_world, rank, ierr)
  error(ierr)
  ! compute starting/ending element numbers
  lnume = nume / sz
  istart = rank * lnume
  iend = istart + lnume - 1
  if (rank .eq. sz-1) then
     iend = nume-1
     lnume = iend - istart + 1
  endif
  ! for my elements, figure out which vertices I use and accumulate local indices and coords
  ! lvids stores the local 0-based index for each vertex; -1 means vertex i isn't used locally
  ! also build up connectivity indices for local elements, in lconn
  do iv = 0, numv-1
     lvids(iv) = -1
  end do
  lnumv = -1
  do ie = istart, iend
     do iv = 0, lvpe-1
        indv = iconn(lvpe*ie + iv)
        if (lvids(indv) .eq. -1) then
           lnumv = lnumv + 1 ! increment local # verts
           do ic = 0, 2 ! cache local coords
              lcoords(3*lnumv+ic) = coords(3*indv+ic)
           end do
           lvids(indv) = lnumv
           gvids(lnumv) = 1+indv
        end if
        lconn(lvpe*(ie-istart)+iv) = lvids(indv)
     end do  ! do iv
  end do  ! do ie
  
  lnumv = lnumv + 1
 
  ! now create the mesh; this also initializes parallel sharing and ghost exchange
  imesh = 0
  imeshp = 0
  call create_mesh(imesh, imeshp, mpi_comm_world, lnumv, lnume, gvids, lvpe, ltp, lcoords, lconn, &
       vertsptr, entsptr, ierr)
  error(ierr)
  call c_f_pointer(vertsptr, verts, [lnumv])
  call c_f_pointer(entsptr, ents, [lnume])
 
  ! get/report number of vertices, elements
  call imesh_getrootset(%VAL(imesh), root_set, ierr)
  error(ierr)
  iv = 0
  ie = 0
  call imeshp_getnumoftypeall(%VAL(imesh), %VAL(imeshp), %VAL(root_set), %VAL(ibase_vertex), iv, ierr)
  error(ierr)
  call imeshp_getnumoftypeall(%VAL(imesh), %VAL(imeshp), %VAL(root_set), %VAL(ibase_face), ie, ierr)
  error(ierr)
  if (rank .eq. 0) then
     write(0,*) "Number of vertices = ", iv
     write(0,*) "Number of entities = ", ie
  endif
 
  ! from here, can use verts and ents as (1-based) arrays of entity handles for input to other iMesh functions
 
  call mpi_finalize(ierr)
#else
  write(0, *) "compile with MPI for better experience\n"
#endif
  stop
end program pushparmeshintomoab
 
#ifdef MOAB_HAVE_MPI
subroutine create_mesh( &
  !     interfaces
     imesh, imeshp, &
  !     input
     comm, numv, nume, vgids, nvpe, tp, posn, iconn, &
  !     output
     vertsPtr, entsPtr, ierr)
  !
  ! create a mesh with numv vertices and nume elements, with elements of type tp
  ! vertices have positions in posn (3 coordinates each, interleaved xyzxyz...), indexed from 0
  ! elements have nvpe vertices per entity, with connectivity indices stored in iconn, referencing
  ! vertices using 0-based indices; vertex and entity handles are output in arrays passed in
  !
  ! if imesh/imeshp are 0, imesh/imeshp are initialized in this subroutine
  !
 
  use iso_c_binding
  implicit none
 
#  include "iMeshP_f.h"
#  include "mpif.h"
 
  ! subroutine arguments
  imesh_instance imesh
  TYPE(c_ptr) :: vertsptr, entsptr
  integer numv, nume, nvpe, vgids(0:*), iconn(0:*), ierr, tp
  real*8 posn(0:*)
#ifdef MOAB_HAVE_MPI
  imeshp_partitionhandle imeshp
  integer comm
#endif
 
  ! local variables
  integer comm_sz, comm_rank, numa, numo, iv, ie
  TYPE(c_ptr) :: statsptr
  integer, allocatable, target :: stats(:)
  ibase_taghandle tagh
  integer i
  ibase_entityhandle, pointer :: verts(:), ents(:)
  ibase_entityhandle, allocatable :: conn(:)
  ibase_entitysethandle root_set
  ibase_entitysethandle file_set
#ifdef MOAB_HAVE_MPI
  ibase_handle_t mpi_comm_c
  TYPE(c_ptr) :: partsptr
  imeshp_parthandle, pointer :: parts(:)
  imeshp_parthandle part
  integer partsa, partso
  character (len=10) filename
#endif
 
  ! create the Mesh instance
  if (imesh .eq. 0) then
     call imesh_newmesh("MOAB", imesh, ierr)
  end if
 
#ifdef MOAB_HAVE_MPI
  if (imeshp .eq. 0) then
     call imeshp_getcommunicator(%VAL(imesh), mpi_comm_world, mpi_comm_c, ierr)
     error(ierr)
     call imeshp_createpartitionall(%VAL(imesh), %VAL(mpi_comm_c), imeshp, ierr)
     error(ierr)
     call imeshp_createpart(%VAL(imesh), %VAL(imeshp), part, ierr)
     error(ierr)
  else 
     partsa = 0
     call imeshp_getlocalparts(%VAL(imesh), %VAL(imeshp), partsptr, partsa, partso, ierr)
     error(ierr)
     call c_f_pointer(partsptr, parts, [partso])
     part = parts(1)
  end if
  call mpi_comm_rank(comm, comm_rank, ierr)
  error(ierr)
  call mpi_comm_size(comm, comm_sz, ierr)
  error(ierr)
#endif
 
  ! create the vertices, all in one call
  numa = 0
  call imesh_createvtxarr(%VAL(imesh), %VAL(numv), %VAL(ibase_interleaved), posn, %VAL(3*numv), &
       vertsptr, numa, numo, ierr)
  error(ierr)
 
  ! fill in the connectivity array, based on indexing from iconn
  allocate (conn(0:nvpe*nume-1))
  call c_f_pointer(vertsptr, verts, [numv])
  do i = 0, nvpe*nume-1
     conn(i) = verts(1+iconn(i))
  end do
  ! create the elements
  numa = 0
  allocate(stats(0:nume-1))
  statsptr = c_loc(stats(0))
  call imesh_createentarr(%VAL(imesh), %VAL(tp), conn, %VAL(nvpe*nume), &
       entsptr, numa, numo, statsptr, numa, numo, ierr)
  deallocate(stats)
  deallocate(conn)
 
#ifdef MOAB_HAVE_MPI
  ! take care of parallel stuff
 
  ! add entities to part, using iMesh
  call c_f_pointer(entsptr, ents, [numo])
  call imesh_addentarrtoset(%VAL(imesh), ents, %VAL(numo), %VAL(part), ierr)
  error(ierr)
  ! set global ids on vertices, needed for sharing between procs
  call imesh_gettaghandle(%VAL(imesh), "GLOBAL_ID", tagh, ierr, %VAL(9))
  if (ibase_success .ne. ierr) then
     ! didn't get handle, need to create the tag
     call imesh_createtag(%VAL(imesh), "GLOBAL_ID", %VAL(ibase_integer), tagh, ierr)
     error(ierr)
  end if
  call imesh_setintarrdata(%VAL(imesh), verts, %VAL(numv), %VAL(tagh), vgids, %VAL(numv), ierr)
  error(ierr)
  ! now resolve shared verts and exchange ghost cells
  call imeshp_syncmeshall(%VAL(imesh), %VAL(imeshp), ierr)
  error(ierr)
 
  call imeshp_createghostentsall(%VAL(imesh), %VAL(imeshp), %VAL(2), %VAL(1), %VAL(1), %VAL(0), ierr)
  error(ierr)
 
#endif
 
  return
end subroutine create_mesh
#endif