Actual source code: mpiaijviennacl.cxx
petsc-3.9.4 2018-09-11
1: #include <petscconf.h>
2: #include <../src/mat/impls/aij/mpi/mpiaij.h>
3: #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h>
5: PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJViennaCL(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
6: {
7: Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data;
11: PetscLayoutSetUp(B->rmap);
12: PetscLayoutSetUp(B->cmap);
13: if (!B->preallocated) {
14: /* Explicitly create the two MATSEQAIJVIENNACL matrices. */
15: MatCreate(PETSC_COMM_SELF,&b->A);
16: MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);
17: MatSetType(b->A,MATSEQAIJVIENNACL);
18: PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);
19: MatCreate(PETSC_COMM_SELF,&b->B);
20: MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);
21: MatSetType(b->B,MATSEQAIJVIENNACL);
22: PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);
23: }
24: MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);
25: MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);
26: B->preallocated = PETSC_TRUE;
27: return(0);
28: }
30: PetscErrorCode MatCreateVecs_MPIAIJViennaCL(Mat mat,Vec *right,Vec *left)
31: {
33: PetscInt rbs,cbs;
36: MatGetBlockSizes(mat,&rbs,&cbs);
37: if (right) {
38: VecCreate(PetscObjectComm((PetscObject)mat),right);
39: VecSetSizes(*right,mat->cmap->n,PETSC_DETERMINE);
40: VecSetBlockSize(*right,cbs);
41: VecSetType(*right,VECVIENNACL);
42: VecSetLayout(*right,mat->cmap);
43: }
44: if (left) {
45: VecCreate(PetscObjectComm((PetscObject)mat),left);
46: VecSetSizes(*left,mat->rmap->n,PETSC_DETERMINE);
47: VecSetBlockSize(*left,rbs);
48: VecSetType(*left,VECVIENNACL);
49: VecSetLayout(*left,mat->rmap);
50: }
51: return(0);
52: }
54: PetscErrorCode MatAssemblyEnd_MPIAIJViennaCL(Mat A,MatAssemblyType mode)
55: {
56: Mat_MPIAIJ *b = (Mat_MPIAIJ*)A->data;
58: PetscBool v;
61: MatAssemblyEnd_MPIAIJ(A,mode);
62: PetscObjectTypeCompare((PetscObject)b->lvec,VECSEQVIENNACL,&v);
63: if (!v) {
64: PetscInt m;
65: VecGetSize(b->lvec,&m);
66: VecDestroy(&b->lvec);
67: VecCreateSeqViennaCL(PETSC_COMM_SELF,m,&b->lvec);
68: }
69: return(0);
70: }
72: PetscErrorCode MatDestroy_MPIAIJViennaCL(Mat A)
73: {
77: MatDestroy_MPIAIJ(A);
78: return(0);
79: }
81: PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJViennaCL(Mat A)
82: {
86: MatCreate_MPIAIJ(A);
87: PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJViennaCL);
88: A->ops->getvecs = MatCreateVecs_MPIAIJViennaCL;
89: A->ops->assemblyend = MatAssemblyEnd_MPIAIJViennaCL;
90: PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJVIENNACL);
91: return(0);
92: }
95: /*@
96: MatCreateAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format
97: (the default parallel PETSc format). This matrix will ultimately be pushed down
98: to GPUs and use the ViennaCL library for calculations. For good matrix
99: assembly performance the user should preallocate the matrix storage by setting
100: the parameter nz (or the array nnz). By setting these parameters accurately,
101: performance during matrix assembly can be increased substantially.
104: Collective on MPI_Comm
106: Input Parameters:
107: + comm - MPI communicator, set to PETSC_COMM_SELF
108: . m - number of rows
109: . n - number of columns
110: . nz - number of nonzeros per row (same for all rows)
111: - nnz - array containing the number of nonzeros in the various rows
112: (possibly different for each row) or NULL
114: Output Parameter:
115: . A - the matrix
117: It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
118: MatXXXXSetPreallocation() paradigm instead of this routine directly.
119: [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
121: Notes:
122: If nnz is given then nz is ignored
124: The AIJ format (also called the Yale sparse matrix format or
125: compressed row storage), is fully compatible with standard Fortran 77
126: storage. That is, the stored row and column indices can begin at
127: either one (as in Fortran) or zero. See the users' manual for details.
129: Specify the preallocated storage with either nz or nnz (not both).
130: Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
131: allocation. For large problems you MUST preallocate memory or you
132: will get TERRIBLE performance, see the users' manual chapter on matrices.
134: Level: intermediate
136: .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSPARSE(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJVIENNACL, MATAIJVIENNACL
137: @*/
138: PetscErrorCode MatCreateAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
139: {
141: PetscMPIInt size;
144: MatCreate(comm,A);
145: MatSetSizes(*A,m,n,M,N);
146: MPI_Comm_size(comm,&size);
147: if (size > 1) {
148: MatSetType(*A,MATMPIAIJVIENNACL);
149: MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);
150: } else {
151: MatSetType(*A,MATSEQAIJVIENNACL);
152: MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);
153: }
154: return(0);
155: }
157: /*MC
158: MATAIJVIENNACL - MATMPIAIJVIENNACL= "aijviennacl" = "mpiaijviennacl" - A matrix type to be used for sparse matrices.
160: A matrix type (CSR format) whose data resides on GPUs.
161: All matrix calculations are performed using the ViennaCL library.
163: This matrix type is identical to MATSEQAIJVIENNACL when constructed with a single process communicator,
164: and MATMPIAIJVIENNACL otherwise. As a result, for single process communicators,
165: MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported
166: for communicators controlling multiple processes. It is recommended that you call both of
167: the above preallocation routines for simplicity.
169: Options Database Keys:
170: + -mat_type mpiaijviennacl - sets the matrix type to "mpiaijviennacl" during a call to MatSetFromOptions()
172: Level: beginner
174: .seealso: MatCreateAIJViennaCL(), MATSEQAIJVIENNACL, MatCreateSeqAIJVIENNACL()
175: M*/