Actual source code: petscvec.h
petsc-3.9.4 2018-09-11
1: /*
2: Defines the vector component of PETSc. Vectors generally represent
3: degrees of freedom for finite element/finite difference functions
4: on a grid. They have more mathematical structure then simple arrays.
5: */
7: #ifndef __PETSCVEC_H
9: #include <petscis.h>
10: #include <petscviewer.h>
12: /*S
13: Vec - Abstract PETSc vector object
15: Level: beginner
17: Concepts: field variables, unknowns, arrays
19: .seealso: VecCreate(), VecType, VecSetType()
20: S*/
21: typedef struct _p_Vec* Vec;
23: /*S
24: VecScatter - Object used to manage communication of data
25: between vectors in parallel. Manages both scatters and gathers
27: Level: beginner
29: Concepts: scatter
31: .seealso: VecScatterCreate(), VecScatterBegin(), VecScatterEnd()
32: S*/
33: typedef struct _p_VecScatter* VecScatter;
35: /*E
36: ScatterMode - Determines the direction of a scatter
38: Level: beginner
40: .seealso: VecScatter, VecScatterBegin(), VecScatterEnd()
41: E*/
42: typedef enum {SCATTER_FORWARD=0, SCATTER_REVERSE=1, SCATTER_FORWARD_LOCAL=2, SCATTER_REVERSE_LOCAL=3, SCATTER_LOCAL=2} ScatterMode;
44: /*MC
45: SCATTER_FORWARD - Scatters the values as dictated by the VecScatterCreate() call
47: Level: beginner
49: .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD_LOCAL,
50: SCATTER_REVERSE_LOCAL
52: M*/
54: /*MC
55: SCATTER_REVERSE - Moves the values in the opposite direction then the directions indicated in
56: in the VecScatterCreate()
58: Level: beginner
60: .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL,
61: SCATTER_REVERSE_LOCAL
63: M*/
65: /*MC
66: SCATTER_FORWARD_LOCAL - Scatters the values as dictated by the VecScatterCreate() call except NO parallel communication
67: is done. Any variables that have be moved between processes are ignored
69: Level: developer
71: .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD,
72: SCATTER_REVERSE_LOCAL
74: M*/
76: /*MC
77: SCATTER_REVERSE_LOCAL - Moves the values in the opposite direction then the directions indicated in
78: in the VecScatterCreate() except NO parallel communication
79: is done. Any variables that have be moved between processes are ignored
81: Level: developer
83: .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL,
84: SCATTER_REVERSE
86: M*/
88: /*J
89: VecType - String with the name of a PETSc vector
91: Level: beginner
93: .seealso: VecSetType(), Vec, VecCreate(), VecDestroy()
94: J*/
95: typedef const char* VecType;
96: #define VECSEQ "seq"
97: #define VECMPI "mpi"
98: #define VECSTANDARD "standard" /* seq on one process and mpi on several */
99: #define VECSHARED "shared"
100: #define VECSEQVIENNACL "seqviennacl"
101: #define VECMPIVIENNACL "mpiviennacl"
102: #define VECVIENNACL "viennacl" /* seqviennacl on one process and mpiviennacl on several */
103: #define VECSEQCUDA "seqcuda"
104: #define VECMPICUDA "mpicuda"
105: #define VECCUDA "cuda" /* seqcuda on one process and mpicuda on several */
106: #define VECNEST "nest"
107: #define VECNODE "node" /* use on-node shared memory */
109: /*J
110: VecScatterType - String with the name of a PETSc vector scatter type
112: Level: beginner
114: .seealso: VecScatterSetType(), VecScatter, VecScatterCreate(), VecScatterDestroy()
115: J*/
116: typedef const char* VecScatterType;
117: #define VECSCATTERSEQ "seq"
118: #define VECSCATTERMPI1 "mpi1"
119: #define VECSCATTERMPI3 "mpi3" /* use MPI3 on-node shared memory */
120: #define VECSCATTERMPI3NODE "mpi3node" /* use MPI3 on-node shared memory for vector type VECNODE */
122: /* Dynamic creation and loading functions */
123: PETSC_EXTERN PetscFunctionList VecScatterList;
124: PETSC_EXTERN PetscErrorCode VecScatterSetType(VecScatter, VecScatterType);
125: PETSC_EXTERN PetscErrorCode VecScatterGetType(VecScatter, VecScatterType *);
126: PETSC_EXTERN PetscErrorCode VecScatterSetFromOptions(VecScatter);
127: PETSC_EXTERN PetscErrorCode VecScatterRegister(const char[],PetscErrorCode (*)(VecScatter));
128: PETSC_EXTERN PetscErrorCode VecScatterCreate(Vec,IS,Vec,IS,VecScatter*);
129: PETSC_EXTERN PetscErrorCode VecScatterInitializePackage(void);
130: PETSC_EXTERN PetscErrorCode VecScatterFinalizePackage(void);
132: /* Logging support */
133: #define REAL_FILE_CLASSID 1211213
134: #define VEC_FILE_CLASSID 1211214
135: PETSC_EXTERN PetscClassId VEC_CLASSID;
136: PETSC_EXTERN PetscClassId VEC_SCATTER_CLASSID;
139: PETSC_EXTERN PetscErrorCode VecInitializePackage(void);
140: PETSC_EXTERN PetscErrorCode VecFinalizePackage(void);
142: PETSC_EXTERN PetscErrorCode VecCreate(MPI_Comm,Vec*);
143: PETSC_EXTERN PetscErrorCode VecCreateSeq(MPI_Comm,PetscInt,Vec*);
144: PETSC_EXTERN PetscErrorCode VecCreateMPI(MPI_Comm,PetscInt,PetscInt,Vec*);
145: PETSC_EXTERN PetscErrorCode VecCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar[],Vec*);
146: PETSC_EXTERN PetscErrorCode VecCreateMPIWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscScalar[],Vec*);
147: PETSC_EXTERN PetscErrorCode VecCreateShared(MPI_Comm,PetscInt,PetscInt,Vec*);
148: PETSC_EXTERN PetscErrorCode VecCreateNode(MPI_Comm,PetscInt,PetscInt,Vec*);
150: PETSC_EXTERN PetscErrorCode VecSetFromOptions(Vec);
151: PETSC_STATIC_INLINE PetscErrorCode VecViewFromOptions(Vec A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);}
153: PETSC_EXTERN PetscErrorCode VecSetUp(Vec);
154: PETSC_EXTERN PetscErrorCode VecDestroy(Vec*);
155: PETSC_EXTERN PetscErrorCode VecZeroEntries(Vec);
156: PETSC_EXTERN PetscErrorCode VecSetOptionsPrefix(Vec,const char[]);
157: PETSC_EXTERN PetscErrorCode VecAppendOptionsPrefix(Vec,const char[]);
158: PETSC_EXTERN PetscErrorCode VecGetOptionsPrefix(Vec,const char*[]);
160: PETSC_EXTERN PetscErrorCode VecSetSizes(Vec,PetscInt,PetscInt);
162: PETSC_EXTERN PetscErrorCode VecDotNorm2(Vec,Vec,PetscScalar*,PetscReal*);
163: PETSC_EXTERN PetscErrorCode VecDot(Vec,Vec,PetscScalar*);
164: PETSC_EXTERN PetscErrorCode VecDotRealPart(Vec,Vec,PetscReal*);
165: PETSC_EXTERN PetscErrorCode VecTDot(Vec,Vec,PetscScalar*);
166: PETSC_EXTERN PetscErrorCode VecMDot(Vec,PetscInt,const Vec[],PetscScalar[]);
167: PETSC_EXTERN PetscErrorCode VecMTDot(Vec,PetscInt,const Vec[],PetscScalar[]);
168: PETSC_EXTERN PetscErrorCode VecGetSubVector(Vec,IS,Vec*);
169: PETSC_EXTERN PetscErrorCode VecRestoreSubVector(Vec,IS,Vec*);
171: /*E
172: NormType - determines what type of norm to compute
174: Level: beginner
176: .seealso: VecNorm(), VecNormBegin(), VecNormEnd(), MatNorm()
177: E*/
178: typedef enum {NORM_1=0,NORM_2=1,NORM_FROBENIUS=2,NORM_INFINITY=3,NORM_1_AND_2=4} NormType;
179: PETSC_EXTERN const char *const NormTypes[];
180: #define NORM_MAX NORM_INFINITY
182: /*MC
183: NORM_1 - the one norm, ||v|| = sum_i | v_i |. ||A|| = max_j || v_*j ||, maximum column sum
185: Level: beginner
187: .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_2, NORM_FROBENIUS,
188: NORM_INFINITY, NORM_1_AND_2
190: M*/
192: /*MC
193: NORM_2 - the two norm, ||v|| = sqrt(sum_i |v_i|^2) (vectors only)
195: Level: beginner
197: .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_FROBENIUS,
198: NORM_INFINITY, NORM_1_AND_2
200: M*/
202: /*MC
203: NORM_FROBENIUS - ||A|| = sqrt(sum_ij |A_ij|^2), same as NORM_2 for vectors
205: Level: beginner
207: .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2,
208: NORM_INFINITY, NORM_1_AND_2
210: M*/
212: /*MC
213: NORM_INFINITY - ||v|| = max_i |v_i|. ||A|| = max_i || v_i* ||, maximum row sum
215: Level: beginner
217: .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2,
218: NORM_FROBINIUS, NORM_1_AND_2
220: M*/
222: /*MC
223: NORM_1_AND_2 - computes both the 1 and 2 norm of a vector
225: Level: beginner
227: .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2,
228: NORM_FROBINIUS, NORM_INFINITY
230: M*/
232: /*MC
233: NORM_MAX - see NORM_INFINITY
235: Level: beginner
237: M*/
239: PETSC_EXTERN PetscErrorCode VecNorm(Vec,NormType,PetscReal *);
240: PETSC_EXTERN PetscErrorCode VecNormAvailable(Vec,NormType,PetscBool *,PetscReal *);
241: PETSC_EXTERN PetscErrorCode VecNormalize(Vec,PetscReal *);
242: PETSC_EXTERN PetscErrorCode VecSum(Vec,PetscScalar*);
243: PETSC_EXTERN PetscErrorCode VecMax(Vec,PetscInt*,PetscReal *);
244: PETSC_EXTERN PetscErrorCode VecMin(Vec,PetscInt*,PetscReal *);
245: PETSC_EXTERN PetscErrorCode VecScale(Vec,PetscScalar);
246: PETSC_EXTERN PetscErrorCode VecCopy(Vec,Vec);
247: PETSC_EXTERN PetscErrorCode VecSetRandom(Vec,PetscRandom);
248: PETSC_EXTERN PetscErrorCode VecSet(Vec,PetscScalar);
249: PETSC_EXTERN PetscErrorCode VecSetInf(Vec);
250: PETSC_EXTERN PetscErrorCode VecSwap(Vec,Vec);
251: PETSC_EXTERN PetscErrorCode VecAXPY(Vec,PetscScalar,Vec);
252: PETSC_EXTERN PetscErrorCode VecAXPBY(Vec,PetscScalar,PetscScalar,Vec);
253: PETSC_EXTERN PetscErrorCode VecMAXPY(Vec,PetscInt,const PetscScalar[],Vec[]);
254: PETSC_EXTERN PetscErrorCode VecAYPX(Vec,PetscScalar,Vec);
255: PETSC_EXTERN PetscErrorCode VecWAXPY(Vec,PetscScalar,Vec,Vec);
256: PETSC_EXTERN PetscErrorCode VecAXPBYPCZ(Vec,PetscScalar,PetscScalar,PetscScalar,Vec,Vec);
257: PETSC_EXTERN PetscErrorCode VecPointwiseMax(Vec,Vec,Vec);
258: PETSC_EXTERN PetscErrorCode VecPointwiseMaxAbs(Vec,Vec,Vec);
259: PETSC_EXTERN PetscErrorCode VecPointwiseMin(Vec,Vec,Vec);
260: PETSC_EXTERN PetscErrorCode VecPointwiseMult(Vec,Vec,Vec);
261: PETSC_EXTERN PetscErrorCode VecPointwiseDivide(Vec,Vec,Vec);
262: PETSC_EXTERN PetscErrorCode VecMaxPointwiseDivide(Vec,Vec,PetscReal*);
263: PETSC_EXTERN PetscErrorCode VecShift(Vec,PetscScalar);
264: PETSC_EXTERN PetscErrorCode VecReciprocal(Vec);
265: PETSC_EXTERN PetscErrorCode VecPermute(Vec, IS, PetscBool );
266: PETSC_EXTERN PetscErrorCode VecSqrtAbs(Vec);
267: PETSC_EXTERN PetscErrorCode VecLog(Vec);
268: PETSC_EXTERN PetscErrorCode VecExp(Vec);
269: PETSC_EXTERN PetscErrorCode VecAbs(Vec);
270: PETSC_EXTERN PetscErrorCode VecDuplicate(Vec,Vec*);
271: PETSC_EXTERN PetscErrorCode VecDuplicateVecs(Vec,PetscInt,Vec*[]);
272: PETSC_EXTERN PetscErrorCode VecDestroyVecs(PetscInt, Vec*[]);
273: PETSC_EXTERN PetscErrorCode VecStrideNormAll(Vec,NormType,PetscReal[]);
274: PETSC_EXTERN PetscErrorCode VecStrideMaxAll(Vec,PetscInt [],PetscReal []);
275: PETSC_EXTERN PetscErrorCode VecStrideMinAll(Vec,PetscInt [],PetscReal []);
276: PETSC_EXTERN PetscErrorCode VecStrideScaleAll(Vec,const PetscScalar[]);
277: PETSC_EXTERN PetscErrorCode VecUniqueEntries(Vec,PetscInt*,PetscScalar**);
279: PETSC_EXTERN PetscErrorCode VecStrideNorm(Vec,PetscInt,NormType,PetscReal*);
280: PETSC_EXTERN PetscErrorCode VecStrideMax(Vec,PetscInt,PetscInt *,PetscReal *);
281: PETSC_EXTERN PetscErrorCode VecStrideMin(Vec,PetscInt,PetscInt *,PetscReal *);
282: PETSC_EXTERN PetscErrorCode VecStrideScale(Vec,PetscInt,PetscScalar);
283: PETSC_EXTERN PetscErrorCode VecStrideSet(Vec,PetscInt,PetscScalar);
286: PETSC_EXTERN PetscErrorCode VecStrideGather(Vec,PetscInt,Vec,InsertMode);
287: PETSC_EXTERN PetscErrorCode VecStrideScatter(Vec,PetscInt,Vec,InsertMode);
288: PETSC_EXTERN PetscErrorCode VecStrideGatherAll(Vec,Vec[],InsertMode);
289: PETSC_EXTERN PetscErrorCode VecStrideScatterAll(Vec[],Vec,InsertMode);
291: PETSC_EXTERN PetscErrorCode VecStrideSubSetScatter(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode);
292: PETSC_EXTERN PetscErrorCode VecStrideSubSetGather(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode);
294: PETSC_EXTERN PetscErrorCode VecSetValues(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
295: PETSC_EXTERN PetscErrorCode VecGetValues(Vec,PetscInt,const PetscInt[],PetscScalar[]);
296: PETSC_EXTERN PetscErrorCode VecAssemblyBegin(Vec);
297: PETSC_EXTERN PetscErrorCode VecAssemblyEnd(Vec);
298: PETSC_EXTERN PetscErrorCode VecStashSetInitialSize(Vec,PetscInt,PetscInt);
299: PETSC_EXTERN PetscErrorCode VecStashView(Vec,PetscViewer);
300: PETSC_EXTERN PetscErrorCode VecStashViewFromOptions(Vec,PetscObject,const char[]);
301: PETSC_EXTERN PetscErrorCode VecStashGetInfo(Vec,PetscInt*,PetscInt*,PetscInt*,PetscInt*);
303: /*MC
304: VecSetValue - Set a single entry into a vector.
306: Synopsis:
307: #include <petscvec.h>
308: PetscErrorCode VecSetValue(Vec v,PetscInt row,PetscScalar value, InsertMode mode);
310: Not Collective
312: Input Parameters:
313: + v - the vector
314: . row - the row location of the entry
315: . value - the value to insert
316: - mode - either INSERT_VALUES or ADD_VALUES
318: Notes:
319: For efficiency one should use VecSetValues() and set several or
320: many values simultaneously if possible.
322: These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd()
323: MUST be called after all calls to VecSetValue() have been completed.
325: VecSetValue() uses 0-based indices in Fortran as well as in C.
327: Level: beginner
329: .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValueLocal()
330: M*/
331: PETSC_STATIC_INLINE PetscErrorCode VecSetValue(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValues(v,1,&i,&va,mode);}
334: PETSC_EXTERN PetscErrorCode VecSetBlockSize(Vec,PetscInt);
335: PETSC_EXTERN PetscErrorCode VecGetBlockSize(Vec,PetscInt*);
336: PETSC_EXTERN PetscErrorCode VecSetValuesBlocked(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
338: /* Dynamic creation and loading functions */
339: PETSC_EXTERN PetscFunctionList VecList;
340: PETSC_EXTERN PetscErrorCode VecSetType(Vec, VecType);
341: PETSC_EXTERN PetscErrorCode VecGetType(Vec, VecType *);
342: PETSC_EXTERN PetscErrorCode VecRegister(const char[],PetscErrorCode (*)(Vec));
344: PETSC_EXTERN PetscErrorCode VecScatterCreate(Vec,IS,Vec,IS,VecScatter *);
345: PETSC_EXTERN PetscErrorCode VecScatterCreateEmpty(MPI_Comm,VecScatter *);
346: PETSC_EXTERN PetscErrorCode VecScatterBegin(VecScatter,Vec,Vec,InsertMode,ScatterMode);
347: PETSC_EXTERN PetscErrorCode VecScatterEnd(VecScatter,Vec,Vec,InsertMode,ScatterMode);
348: PETSC_EXTERN PetscErrorCode VecScatterDestroy(VecScatter*);
349: PETSC_EXTERN PetscErrorCode VecScatterCopy(VecScatter,VecScatter *);
350: PETSC_EXTERN PetscErrorCode VecScatterView(VecScatter,PetscViewer);
351: PETSC_STATIC_INLINE PetscErrorCode VecScatterViewFromOptions(VecScatter A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);}
352: PETSC_EXTERN PetscErrorCode VecScatterRemap(VecScatter,PetscInt *,PetscInt*);
353: PETSC_EXTERN PetscErrorCode VecScatterGetMerged(VecScatter,PetscBool *);
355: PETSC_EXTERN PetscErrorCode VecGetArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]);
356: PETSC_EXTERN PetscErrorCode VecRestoreArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]);
357: PETSC_EXTERN PetscErrorCode VecGetArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]);
358: PETSC_EXTERN PetscErrorCode VecRestoreArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]);
359: PETSC_EXTERN PetscErrorCode VecGetArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]);
360: PETSC_EXTERN PetscErrorCode VecRestoreArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]);
361: PETSC_EXTERN PetscErrorCode VecGetArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]);
362: PETSC_EXTERN PetscErrorCode VecRestoreArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]);
364: PETSC_EXTERN PetscErrorCode VecGetArray4dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]);
365: PETSC_EXTERN PetscErrorCode VecRestoreArray4dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]);
366: PETSC_EXTERN PetscErrorCode VecGetArray3dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]);
367: PETSC_EXTERN PetscErrorCode VecRestoreArray3dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]);
368: PETSC_EXTERN PetscErrorCode VecGetArray2dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]);
369: PETSC_EXTERN PetscErrorCode VecRestoreArray2dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]);
370: PETSC_EXTERN PetscErrorCode VecGetArray1dRead(Vec,PetscInt,PetscInt,PetscScalar *[]);
371: PETSC_EXTERN PetscErrorCode VecRestoreArray1dRead(Vec,PetscInt,PetscInt,PetscScalar *[]);
373: PETSC_EXTERN PetscErrorCode VecPlaceArray(Vec,const PetscScalar[]);
374: PETSC_EXTERN PetscErrorCode VecResetArray(Vec);
375: PETSC_EXTERN PetscErrorCode VecReplaceArray(Vec,const PetscScalar[]);
376: PETSC_EXTERN PetscErrorCode VecGetArrays(const Vec[],PetscInt,PetscScalar**[]);
377: PETSC_EXTERN PetscErrorCode VecRestoreArrays(const Vec[],PetscInt,PetscScalar**[]);
379: PETSC_EXTERN PetscErrorCode VecView(Vec,PetscViewer);
380: PETSC_EXTERN PetscErrorCode VecEqual(Vec,Vec,PetscBool *);
381: PETSC_EXTERN PetscErrorCode VecLoad(Vec, PetscViewer);
383: PETSC_EXTERN PetscErrorCode VecGetSize(Vec,PetscInt*);
384: PETSC_EXTERN PetscErrorCode VecGetLocalSize(Vec,PetscInt*);
385: PETSC_EXTERN PetscErrorCode VecGetOwnershipRange(Vec,PetscInt*,PetscInt*);
386: PETSC_EXTERN PetscErrorCode VecGetOwnershipRanges(Vec,const PetscInt *[]);
388: PETSC_EXTERN PetscErrorCode VecSetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping);
389: PETSC_EXTERN PetscErrorCode VecSetValuesLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
391: /*MC
392: VecSetValueLocal - Set a single entry into a vector using the local numbering
394: Synopsis:
395: #include <petscvec.h>
396: PetscErrorCode VecSetValueLocal(Vec v,PetscInt row,PetscScalar value, InsertMode mode);
398: Not Collective
400: Input Parameters:
401: + v - the vector
402: . row - the row location of the entry
403: . value - the value to insert
404: - mode - either INSERT_VALUES or ADD_VALUES
406: Notes:
407: For efficiency one should use VecSetValues() and set several or
408: many values simultaneously if possible.
410: These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd()
411: MUST be called after all calls to VecSetValues() have been completed.
413: VecSetValues() uses 0-based indices in Fortran as well as in C.
415: Level: beginner
417: .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValue()
418: M*/
419: PETSC_STATIC_INLINE PetscErrorCode VecSetValueLocal(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValuesLocal(v,1,&i,&va,mode);}
421: PETSC_EXTERN PetscErrorCode VecSetValuesBlockedLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
422: PETSC_EXTERN PetscErrorCode VecGetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping*);
424: PETSC_EXTERN PetscErrorCode VecDotBegin(Vec,Vec,PetscScalar *);
425: PETSC_EXTERN PetscErrorCode VecDotEnd(Vec,Vec,PetscScalar *);
426: PETSC_EXTERN PetscErrorCode VecTDotBegin(Vec,Vec,PetscScalar *);
427: PETSC_EXTERN PetscErrorCode VecTDotEnd(Vec,Vec,PetscScalar *);
428: PETSC_EXTERN PetscErrorCode VecNormBegin(Vec,NormType,PetscReal *);
429: PETSC_EXTERN PetscErrorCode VecNormEnd(Vec,NormType,PetscReal *);
431: PETSC_EXTERN PetscErrorCode VecMDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]);
432: PETSC_EXTERN PetscErrorCode VecMDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]);
433: PETSC_EXTERN PetscErrorCode VecMTDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]);
434: PETSC_EXTERN PetscErrorCode VecMTDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]);
435: PETSC_EXTERN PetscErrorCode PetscCommSplitReductionBegin(MPI_Comm);
438: typedef enum {VEC_IGNORE_OFF_PROC_ENTRIES,VEC_IGNORE_NEGATIVE_INDICES,VEC_SUBSET_OFF_PROC_ENTRIES} VecOption;
439: PETSC_EXTERN PetscErrorCode VecSetOption(Vec,VecOption,PetscBool );
441: PETSC_EXTERN PetscErrorCode VecGetArray(Vec,PetscScalar**);
442: PETSC_EXTERN PetscErrorCode VecGetArrayRead(Vec,const PetscScalar**);
443: PETSC_EXTERN PetscErrorCode VecRestoreArray(Vec,PetscScalar**);
444: PETSC_EXTERN PetscErrorCode VecRestoreArrayRead(Vec,const PetscScalar**);
445: PETSC_EXTERN PetscErrorCode VecGetLocalVector(Vec,Vec);
446: PETSC_EXTERN PetscErrorCode VecRestoreLocalVector(Vec,Vec);
447: PETSC_EXTERN PetscErrorCode VecGetLocalVectorRead(Vec,Vec);
448: PETSC_EXTERN PetscErrorCode VecRestoreLocalVectorRead(Vec,Vec);
450: /*@C
451: VecGetArrayPair - Accesses a pair of pointers for two vectors that may be common. When not common the first is read only
453: Logically Collective on Vec
455: Input Parameters:
456: + x - the vector
457: - y - the second vector
459: Output Parameters:
460: + xv - location to put pointer to the first array
461: - yv - location to put pointer to the second array
463: Level: developer
465: Not available from Fortran
467: .seealso: VecGetArray(), VecGetArrayRead(), VecRestoreArrayPair()
469: @*/
470: PETSC_STATIC_INLINE PetscErrorCode VecGetArrayPair(Vec x,Vec y,PetscScalar **xv,PetscScalar **yv)
471: {
475: VecGetArray(y,yv);
476: if (x != y) {
477: VecGetArrayRead(x,(const PetscScalar **)xv);
478: } else {
479: *xv = *yv;
480: }
481: return(0);
482: }
484: /*@C
485: VecRestoreArrayPair - Returns a pair of pointers for two vectors that may be common. When not common the first is read only
487: Logically Collective on Vec
489: Input Parameters:
490: + x - the vector
491: - y - the second vector
493: Output Parameters:
494: + xv - location to put pointer to the first array
495: - yv - location to put pointer to the second array
497: Level: developer
499: Not available from Fortran
501: .seealso: VecGetArray(), VecGetArrayRead(), VecGetArrayPair()
503: @*/
504: PETSC_STATIC_INLINE PetscErrorCode VecRestoreArrayPair(Vec x,Vec y,PetscScalar **xv,PetscScalar **yv)
505: {
509: VecRestoreArray(y,yv);
510: if (x != y) {
511: VecRestoreArrayRead(x,(const PetscScalar **)xv);
512: }
513: return(0);
514: }
516: #if defined(PETSC_USE_DEBUG)
517: PETSC_EXTERN PetscErrorCode VecLockGet(Vec,PetscInt*);
518: PETSC_EXTERN PetscErrorCode VecLockPush(Vec);
519: PETSC_EXTERN PetscErrorCode VecLockPop(Vec);
520: #define VecLocked(x,arg) do {PetscInt _st; PetscErrorCode __VecLockGet(x,&_st); CHKERRQ(__ierr); if (_st > 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE," Vec is locked read only, argument # %d",arg);} while (0)
521: #else
522: #define VecLockGet(x,arg) *(arg) = 0
523: #define VecLockPush(x) 0
524: #define VecLockPop(x) 0
525: #define VecLocked(x,arg)
526: #endif
528: PETSC_EXTERN PetscErrorCode VecValidValues(Vec,PetscInt,PetscBool);
530: /*
531: These numbers need to match the entries in
532: the function table in vecimpl.h
533: */
534: typedef enum { VECOP_DUPLICATE = 0, VECOP_VIEW = 33, VECOP_LOAD = 41, VECOP_VIEWNATIVE = 68, VECOP_LOADNATIVE = 69 } VecOperation;
535: PETSC_EXTERN PetscErrorCode VecSetOperation(Vec,VecOperation,void(*)(void));
537: /*
538: Routines for dealing with ghosted vectors:
539: vectors with ghost elements at the end of the array.
540: */
541: PETSC_EXTERN PetscErrorCode VecMPISetGhost(Vec,PetscInt,const PetscInt[]);
542: PETSC_EXTERN PetscErrorCode VecCreateGhost(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*);
543: PETSC_EXTERN PetscErrorCode VecCreateGhostWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*);
544: PETSC_EXTERN PetscErrorCode VecCreateGhostBlock(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*);
545: PETSC_EXTERN PetscErrorCode VecCreateGhostBlockWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*);
546: PETSC_EXTERN PetscErrorCode VecGhostGetLocalForm(Vec,Vec*);
547: PETSC_EXTERN PetscErrorCode VecGhostRestoreLocalForm(Vec,Vec*);
548: PETSC_EXTERN PetscErrorCode VecGhostIsLocalForm(Vec,Vec,PetscBool*);
549: PETSC_EXTERN PetscErrorCode VecGhostUpdateBegin(Vec,InsertMode,ScatterMode);
550: PETSC_EXTERN PetscErrorCode VecGhostUpdateEnd(Vec,InsertMode,ScatterMode);
552: PETSC_EXTERN PetscErrorCode VecConjugate(Vec);
554: PETSC_EXTERN PetscErrorCode VecScatterCreateToAll(Vec,VecScatter*,Vec*);
555: PETSC_EXTERN PetscErrorCode VecScatterCreateToZero(Vec,VecScatter*,Vec*);
557: PETSC_EXTERN PetscErrorCode ISComplementVec(IS,Vec,IS*);
558: PETSC_EXTERN PetscErrorCode VecPow(Vec, PetscScalar);
559: PETSC_EXTERN PetscErrorCode VecMedian(Vec, Vec, Vec, Vec);
560: PETSC_EXTERN PetscErrorCode VecWhichInactive(Vec, Vec, Vec, Vec, PetscBool, IS *);
561: PETSC_EXTERN PetscErrorCode VecWhichBetween(Vec, Vec, Vec, IS *);
562: PETSC_EXTERN PetscErrorCode VecWhichBetweenOrEqual(Vec, Vec, Vec, IS *);
563: PETSC_EXTERN PetscErrorCode VecWhichGreaterThan(Vec, Vec, IS * );
564: PETSC_EXTERN PetscErrorCode VecWhichLessThan(Vec, Vec, IS *);
565: PETSC_EXTERN PetscErrorCode VecWhichEqual(Vec, Vec, IS *);
566: PETSC_EXTERN PetscErrorCode VecISAXPY(Vec, IS, PetscScalar,Vec);
567: PETSC_EXTERN PetscErrorCode VecISCopy(Vec, IS, ScatterMode, Vec);
568: PETSC_EXTERN PetscErrorCode VecISSet(Vec,IS, PetscScalar);
569: PETSC_EXTERN PetscErrorCode VecBoundGradientProjection(Vec, Vec, Vec, Vec, Vec);
570: PETSC_EXTERN PetscErrorCode VecStepBoundInfo(Vec,Vec,Vec,Vec,PetscReal*, PetscReal*,PetscReal*);
571: PETSC_EXTERN PetscErrorCode VecStepMax(Vec, Vec, PetscReal *);
572: PETSC_EXTERN PetscErrorCode VecStepMaxBounded(Vec,Vec,Vec,Vec,PetscReal*);
574: PETSC_EXTERN PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer, Vec);
575: PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutVector(PetscViewer, Vec);
577: /*S
578: Vecs - Collection of vectors where the data for the vectors is stored in
579: one contiguous memory
581: Level: advanced
583: Notes:
584: Temporary construct for handling multiply right hand side solves
586: This is faked by storing a single vector that has enough array space for
587: n vectors
589: Concepts: parallel decomposition
591: S*/
592: struct _n_Vecs {PetscInt n; Vec v;};
593: typedef struct _n_Vecs* Vecs;
594: PETSC_EXTERN PetscErrorCode VecsDestroy(Vecs);
595: PETSC_EXTERN PetscErrorCode VecsCreateSeq(MPI_Comm,PetscInt,PetscInt,Vecs*);
596: PETSC_EXTERN PetscErrorCode VecsCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,PetscScalar*,Vecs*);
597: PETSC_EXTERN PetscErrorCode VecsDuplicate(Vecs,Vecs*);
599: #if defined(PETSC_HAVE_VIENNACL)
600: typedef struct _p_PetscViennaCLIndices* PetscViennaCLIndices;
601: PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesCreate(PetscInt, PetscInt*,PetscInt, PetscInt*,PetscViennaCLIndices*);
602: PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesDestroy(PetscViennaCLIndices*);
603: PETSC_EXTERN PetscErrorCode VecViennaCLCopyToGPUSome_Public(Vec,PetscViennaCLIndices);
604: PETSC_EXTERN PetscErrorCode VecViennaCLCopyFromGPUSome_Public(Vec,PetscViennaCLIndices);
605: PETSC_EXTERN PetscErrorCode VecCreateSeqViennaCL(MPI_Comm,PetscInt,Vec*);
606: PETSC_EXTERN PetscErrorCode VecCreateMPIViennaCL(MPI_Comm,PetscInt,PetscInt,Vec*);
607: #endif
608: #if defined(PETSC_HAVE_VECCUDA)
609: typedef struct _p_PetscCUDAIndices* PetscCUDAIndices;
610: typedef struct _p_VecScatterCUDAIndices_StoS* VecScatterCUDAIndices_StoS;
611: typedef struct _p_VecScatterCUDAIndices_PtoP* VecScatterCUDAIndices_PtoP;
612: PETSC_EXTERN PetscErrorCode VecCUDACopyToGPUSome_Public(Vec,PetscCUDAIndices);
613: PETSC_EXTERN PetscErrorCode VecCUDACopyFromGPUSome_Public(Vec,PetscCUDAIndices);
614: PETSC_EXTERN PetscErrorCode VecScatterInitializeForGPU(VecScatter,Vec,ScatterMode);
615: PETSC_EXTERN PetscErrorCode VecScatterFinalizeForGPU(VecScatter);
616: PETSC_EXTERN PetscErrorCode VecCreateSeqCUDA(MPI_Comm,PetscInt,Vec*);
617: PETSC_EXTERN PetscErrorCode VecCreateSeqCUDAWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar*,Vec*);
618: PETSC_EXTERN PetscErrorCode VecCreateMPICUDA(MPI_Comm,PetscInt,PetscInt,Vec*);
619: PETSC_EXTERN PetscErrorCode VecCreateMPICUDAWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscScalar*,Vec*);
620: #endif
622: PETSC_EXTERN PetscErrorCode VecNestGetSubVecs(Vec,PetscInt*,Vec**);
623: PETSC_EXTERN PetscErrorCode VecNestGetSubVec(Vec,PetscInt,Vec*);
624: PETSC_EXTERN PetscErrorCode VecNestSetSubVecs(Vec,PetscInt,PetscInt*,Vec*);
625: PETSC_EXTERN PetscErrorCode VecNestSetSubVec(Vec,PetscInt,Vec);
626: PETSC_EXTERN PetscErrorCode VecCreateNest(MPI_Comm,PetscInt,IS*,Vec*,Vec*);
627: PETSC_EXTERN PetscErrorCode VecNestGetSize(Vec,PetscInt*);
629: PETSC_EXTERN PetscErrorCode PetscOptionsGetVec(PetscOptions,const char[],const char[],Vec,PetscBool*);
630: PETSC_EXTERN PetscErrorCode VecChop(Vec,PetscReal);
632: PETSC_EXTERN PetscErrorCode VecGetLayout(Vec,PetscLayout*);
633: PETSC_EXTERN PetscErrorCode VecSetLayout(Vec,PetscLayout);
635: PETSC_EXTERN PetscErrorCode PetscSectionVecView(PetscSection, Vec, PetscViewer);
636: PETSC_EXTERN PetscErrorCode VecGetValuesSection(Vec, PetscSection, PetscInt, PetscScalar **);
637: PETSC_EXTERN PetscErrorCode VecSetValuesSection(Vec, PetscSection, PetscInt, PetscScalar [], InsertMode);
638: PETSC_EXTERN PetscErrorCode PetscSectionVecNorm(PetscSection, PetscSection, Vec, NormType, PetscReal []);
640: PETSC_EXTERN PetscErrorCode PetscSFCreateFromZero(MPI_Comm,Vec,PetscSF*);
642: /*S
643: VecTagger - Object used to manage the tagging of a subset of indices based on the values of a vector. The
644: motivating application is the selection of cells for refinement or coarsening based on vector containing
645: the values in an error indicator metric.
647: Level: advanced
648: S*/
649: typedef struct _p_VecTagger *VecTagger;
651: /*J
652: VecTaggerType - String with the name of a VecTagger type
654: Level: advanced
655: J*/
656: typedef const char* VecTaggerType;
657: /* tag where the vector values are in a box of explicitly defined values */
658: #define VECTAGGERABSOLUTE "absolute"
659: /* tag where the vector values are in a box of values relative to the set of all values in the vector */
660: #define VECTAGGERRELATIVE "relative"
661: /* tag where the vector values are in a relative range of the *cumulative distribution* of values in the vector */
662: #define VECTAGGERCDF "cdf"
663: /* tag a vector as the union of other tags */
664: #define VECTAGGEROR "or"
665: /* tag a vector as the intersection of other tags */
666: #define VECTAGGERAND "and"
668: PETSC_EXTERN PetscClassId VEC_TAGGER_CLASSID;
669: PETSC_EXTERN PetscFunctionList VecTaggerList;
670: PETSC_EXTERN PetscErrorCode VecTaggerRegister(const char[],PetscErrorCode (*) (VecTagger));
672: PETSC_EXTERN PetscErrorCode VecTaggerCreate(MPI_Comm,VecTagger *);
673: PETSC_EXTERN PetscErrorCode VecTaggerSetBlockSize(VecTagger,PetscInt);
674: PETSC_EXTERN PetscErrorCode VecTaggerGetBlockSize(VecTagger,PetscInt*);
675: PETSC_EXTERN PetscErrorCode VecTaggerSetType(VecTagger,VecTaggerType);
676: PETSC_EXTERN PetscErrorCode VecTaggerGetType(VecTagger,VecTaggerType *);
677: PETSC_EXTERN PetscErrorCode VecTaggerSetInvert(VecTagger,PetscBool);
678: PETSC_EXTERN PetscErrorCode VecTaggerGetInvert(VecTagger,PetscBool*);
679: PETSC_EXTERN PetscErrorCode VecTaggerSetFromOptions(VecTagger);
680: PETSC_EXTERN PetscErrorCode VecTaggerSetUp(VecTagger);
681: PETSC_EXTERN PetscErrorCode VecTaggerView(VecTagger,PetscViewer);
682: PETSC_EXTERN PetscErrorCode VecTaggerComputeIS(VecTagger,Vec,IS *);
683: PETSC_EXTERN PetscErrorCode VecTaggerDestroy(VecTagger *);
685: /*S
686: VecTaggerBox - A box range used to tag values. For real scalars, this is just a closed interval; for complex scalars, the box is the closed region in the complex plane
687: such that real(min) <= real(z) <= real(max) and imag(min) <= imag(z) <= imag(max). INF is an acceptable endpoint.
689: Level: beginner
691: .seealso: VecTaggerComputeIntervals()
692: S*/
693: typedef struct {
694: PetscScalar min;
695: PetscScalar max;
696: } VecTaggerBox;
697: PETSC_EXTERN PetscErrorCode VecTaggerComputeBoxes(VecTagger,Vec,PetscInt *,VecTaggerBox **);
700: PETSC_EXTERN PetscErrorCode VecTaggerAbsoluteSetBox(VecTagger,VecTaggerBox *);
701: PETSC_EXTERN PetscErrorCode VecTaggerAbsoluteGetBox(VecTagger,const VecTaggerBox **);
703: PETSC_EXTERN PetscErrorCode VecTaggerRelativeSetBox(VecTagger,VecTaggerBox *);
704: PETSC_EXTERN PetscErrorCode VecTaggerRelativeGetBox(VecTagger,const VecTaggerBox **);
706: PETSC_EXTERN PetscErrorCode VecTaggerCDFSetBox(VecTagger,VecTaggerBox *);
707: PETSC_EXTERN PetscErrorCode VecTaggerCDFGetBox(VecTagger,const VecTaggerBox **);
709: /*E
710: VecTaggerCDFMethod - Determines what method is used to compute absolute values from cumulative distribution values (e.g., what value is the preimage of .95 in the cdf). Relevant only in parallel: in serial it is directly computed.
712: Level: advanced
713: .seealso: VecTaggerCDFSetMethod(), VecTaggerCDFMethods
714: E*/
715: typedef enum {VECTAGGER_CDF_GATHER,VECTAGGER_CDF_ITERATIVE,VECTAGGER_CDF_NUM_METHODS} VecTaggerCDFMethod;
716: PETSC_EXTERN const char *const VecTaggerCDFMethods[];
718: PETSC_EXTERN PetscErrorCode VecTaggerCDFSetMethod(VecTagger,VecTaggerCDFMethod);
719: PETSC_EXTERN PetscErrorCode VecTaggerCDFGetMethod(VecTagger,VecTaggerCDFMethod*);
720: PETSC_EXTERN PetscErrorCode VecTaggerCDFIterativeSetTolerances(VecTagger,PetscInt,PetscReal,PetscReal);
721: PETSC_EXTERN PetscErrorCode VecTaggerCDFIterativeGetTolerances(VecTagger,PetscInt*,PetscReal*,PetscReal*);
723: PETSC_EXTERN PetscErrorCode VecTaggerOrSetSubs(VecTagger,PetscInt,VecTagger*,PetscCopyMode);
724: PETSC_EXTERN PetscErrorCode VecTaggerOrGetSubs(VecTagger,PetscInt*,VecTagger**);
726: PETSC_EXTERN PetscErrorCode VecTaggerAndSetSubs(VecTagger,PetscInt,VecTagger*,PetscCopyMode);
727: PETSC_EXTERN PetscErrorCode VecTaggerAndGetSubs(VecTagger,PetscInt*,VecTagger**);
729: PETSC_EXTERN PetscErrorCode VecTaggerInitializePackage(void);
730: PETSC_EXTERN PetscErrorCode VecTaggerFinalizePackage(void);
732: #endif