Actual source code: ex8.c
petsc-3.6.1 2015-08-06
2: static char help[] = "Demonstrates generating a slice from a DMDA Vector.\n\n";
4: #include <petscdmda.h>
5: #include <petscao.h>
9: /*
10: Given a DMDA generates a VecScatter context that will deliver a slice
11: of the global vector to each processor. In this example, each processor
12: receives the values i=*, j=*, k=rank, i.e. one z plane.
14: Note: This code is written assuming only one degree of freedom per node.
15: For multiple degrees of freedom per node use ISCreateBlock()
16: instead of ISCreateGeneral().
17: */
18: PetscErrorCode GenerateSliceScatter(DM da,VecScatter *scatter,Vec *vslice)
19: {
20: AO ao;
21: PetscInt M,N,P,nslice,*sliceindices,count,i,j;
22: PetscMPIInt rank;
24: MPI_Comm comm;
25: Vec vglobal;
26: IS isfrom,isto;
28: PetscObjectGetComm((PetscObject)da,&comm);
29: MPI_Comm_rank(comm,&rank);
31: DMDAGetAO(da,&ao);
32: DMDAGetInfo(da,0,&M,&N,&P,0,0,0,0,0,0,0,0,0);
34: /*
35: nslice is number of degrees of freedom in this processors slice
36: if there are more processors then z plans the extra processors get 0
37: elements in their slice.
38: */
39: if (rank < P) nslice = M*N;
40: else nslice = 0;
42: /*
43: Generate the local vector to hold this processors slice
44: */
45: VecCreateSeq(PETSC_COMM_SELF,nslice,vslice);
46: DMCreateGlobalVector(da,&vglobal);
48: /*
49: Generate the indices for the slice in the "natural" global ordering
50: Note: this is just an example, one could select any subset of nodes
51: on each processor. Just list them in the global natural ordering.
53: */
54: PetscMalloc1(nslice+1,&sliceindices);
55: count = 0;
56: if (rank < P) {
57: for (j=0; j<N; j++) {
58: for (i=0; i<M; i++) {
59: sliceindices[count++] = rank*M*N + j*M + i;
60: }
61: }
62: }
63: /*
64: Convert the indices to the "PETSc" global ordering
65: */
66: AOApplicationToPetsc(ao,nslice,sliceindices);
68: /* Create the "from" and "to" index set */
69: /* This is to scatter from the global vector */
70: ISCreateGeneral(PETSC_COMM_SELF,nslice,sliceindices,PETSC_OWN_POINTER,&isfrom);
71: /* This is to gather into the local vector */
72: ISCreateStride(PETSC_COMM_SELF,nslice,0,1,&isto);
73: VecScatterCreate(vglobal,isfrom,*vslice,isto,scatter);
74: ISDestroy(&isfrom);
75: ISDestroy(&isto);
76: return 0;
77: }
82: int main(int argc,char **argv)
83: {
84: PetscMPIInt rank;
85: PetscInt m = PETSC_DECIDE,n = PETSC_DECIDE,p = PETSC_DECIDE,M = 3,N = 5,P=3,s=1;
86: PetscInt *lx = NULL,*ly = NULL,*lz = NULL;
87: PetscErrorCode ierr;
88: PetscBool flg = PETSC_FALSE;
89: DM da;
90: Vec local,global,vslice;
91: PetscScalar value;
92: DMBoundaryType wrap = DM_XYPERIODIC;
93: DMDAStencilType stencil_type = DMDA_STENCIL_BOX;
94: VecScatter scatter;
96: PetscInitialize(&argc,&argv,(char*)0,help);
97: MPI_Comm_rank(PETSC_COMM_WORLD,&rank);
99: /* Read options */
100: PetscOptionsGetInt(NULL,"-M",&M,NULL);
101: PetscOptionsGetInt(NULL,"-N",&N,NULL);
102: PetscOptionsGetInt(NULL,"-P",&P,NULL);
103: PetscOptionsGetInt(NULL,"-m",&m,NULL);
104: PetscOptionsGetInt(NULL,"-n",&n,NULL);
105: PetscOptionsGetInt(NULL,"-p",&p,NULL);
106: PetscOptionsGetInt(NULL,"-s",&s,NULL);
107: PetscOptionsGetBool(NULL,"-star",&flg,NULL);
108: if (flg) stencil_type = DMDA_STENCIL_STAR;
110: /* Create distributed array and get vectors */
111: DMDACreate3d(PETSC_COMM_WORLD,wrap,stencil_type,M,N,P,m,n,p,1,s,
112: lx,ly,lz,&da);
113: DMView(da,PETSC_VIEWER_DRAW_WORLD);
114: DMCreateGlobalVector(da,&global);
115: DMCreateLocalVector(da,&local);
117: GenerateSliceScatter(da,&scatter,&vslice);
119: /* Put the value rank+1 into all locations of vslice and transfer back to global vector */
120: value = 1.0 + rank;
121: VecSet(vslice,value);
122: VecScatterBegin(scatter,vslice,global,INSERT_VALUES,SCATTER_REVERSE);
123: VecScatterEnd(scatter,vslice,global,INSERT_VALUES,SCATTER_REVERSE);
125: VecView(global,PETSC_VIEWER_DRAW_WORLD);
127: VecDestroy(&local);
128: VecDestroy(&global);
129: DMDestroy(&da);
130: PetscFinalize();
131: return 0;
132: }