Actual source code: petscviewerhdf5.h
petsc-3.6.1 2015-08-06
5: #include <petscviewer.h>
7: #if defined(PETSC_HAVE_HDF5)
9: #include <hdf5.h>
10: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*);
11: PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *);
12: PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadSizes(PetscViewer, const char[], PetscInt *, PetscInt *);
14: /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */
15: #define PETSC_HDF5_INT_MAX 2147483647
16: #define PETSC_HDF5_INT_MIN -2147483647
20: PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b)
21: {
23: #if defined(PETSC_USE_64BIT_INDICES) && (PETSC_SIZEOF_SIZE_T == 4)
24: if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5");
25: #endif
26: *b = (hsize_t)(a);
27: return(0);
28: }
29: PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*);
30: PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*);
32: #define PetscStackCallHDF5(func,args) do { \
33: herr_t _status; \
34: PetscStackPush(#func);_status = func args;PetscStackPop; if (_status) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)_status); \
35: } while (0)
37: #define PetscStackCallHDF5Return(ret,func,args) do { \
38: PetscStackPush(#func);ret = func args;PetscStackPop; if (ret < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)ret); \
39: } while (0)
41: #endif /* defined(PETSC_HAVE_HDF5) */
43: PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,void*);
44: PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*);
45: PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *);
46: PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteSDS(PetscViewer,float *,int,int *,int);
48: PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*);
49: PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char *);
50: PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer);
51: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char **);
52: PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer);
53: PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt);
54: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*);
56: PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer,PetscBool);
57: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer,PetscBool*);
59: PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer,PetscBool);
60: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer,PetscBool*);
62: /* Reset __FUNCT__ in case the user does not define it themselves */
66: #endif