Actual source code: ex146.c
petsc-3.4.5 2014-06-29
1: /* This program illustrates use of paralllel real FFT*/
2: static char help[]="This program illustrates the use of parallel real 3D fftw (without PETSc interface)";
3: #include <petscmat.h>
4: #include <fftw3.h>
5: #include <fftw3-mpi.h>
9: PetscInt main(PetscInt argc,char **args)
10: {
11: ptrdiff_t N0=256,N1=256,N2=256,N3=2,dim[4];
12: fftw_plan bplan,fplan;
13: fftw_complex *out;
14: double *in1,*in2;
15: ptrdiff_t alloc_local,local_n0,local_0_start;
16: ptrdiff_t local_n1,local_1_start;
17: PetscInt i,j,indx,n1;
18: PetscInt size,rank,n,N,*in,N_factor,NM;
19: PetscScalar *data_fin,value1,one=1.57,zero=0.0;
20: PetscScalar a,*x_arr,*y_arr,*z_arr,enorm;
21: Vec fin,fout,fout1,ini,final;
22: PetscRandom rnd;
24: VecScatter vecscat,vecscat1;
25: IS indx1,indx2;
26: PetscInt *indx3,k,l,*indx4;
27: PetscInt low,tempindx,tempindx1;
30: PetscInitialize(&argc,&args,(char*)0,help);
31: MPI_Comm_size(PETSC_COMM_WORLD, &size);
32: MPI_Comm_rank(PETSC_COMM_WORLD, &rank);
34: PetscRandomCreate(PETSC_COMM_WORLD,&rnd);
37: alloc_local = fftw_mpi_local_size_3d_transposed(N0,N1,N2/2+1,PETSC_COMM_WORLD,&local_n0,&local_0_start,&local_n1,&local_1_start);
39: /* printf("The value alloc_local is %ld from process %d\n",alloc_local,rank); */
40: printf("The value local_n0 is %ld from process %d\n",local_n0,rank);
41: /* printf("The value local_0_start is %ld from process %d\n",local_0_start,rank);*/
42: /* printf("The value local_n1 is %ld from process %d\n",local_n1,rank); */
43: /* printf("The value local_1_start is %ld from process %d\n",local_1_start,rank);*/
45: /* Allocate space for input and output arrays */
47: in1=(double*)fftw_malloc(sizeof(double)*alloc_local*2);
48: in2=(double*)fftw_malloc(sizeof(double)*alloc_local*2);
49: out=(fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local);
52: N=2*N0*N1*(N2/2+1);N_factor=N0*N1*N2;
53: n=2*local_n0*N1*(N2/2+1);n1=local_n1*N0*2*N1;
55: /* printf("The value N is %d from process %d\n",N,rank); */
56: /* printf("The value n is %d from process %d\n",n,rank); */
57: /* printf("The value n1 is %d from process %d\n",n1,rank); */
58: /* Creating data vector and accompanying array with VeccreateMPIWithArray */
59: VecCreateMPIWithArray(PETSC_COMM_WORLD,1,n,N,(PetscScalar*)in1,&fin);
60: VecCreateMPIWithArray(PETSC_COMM_WORLD,1,n,N,(PetscScalar*)out,&fout);
61: VecCreateMPIWithArray(PETSC_COMM_WORLD,1,n,N,(PetscScalar*)in2,&fout1);
63: /* VecGetSize(fin,&size); */
64: /* printf("The size is %d\n",size); */
66: VecSet(fin,one);
67: VecSet(fout,zero);
68: VecSet(fout1,zero);
70: VecAssemblyBegin(fin);
71: VecAssemblyEnd(fin);
72: /* VecView(fin,PETSC_VIEWER_STDOUT_WORLD); */
75: VecGetArray(fin,&x_arr);
76: VecGetArray(fout1,&z_arr);
77: VecGetArray(fout,&y_arr);
79: fplan=fftw_mpi_plan_dft_r2c_3d(N0,N1,N2,(double*)x_arr,(fftw_complex*)y_arr,PETSC_COMM_WORLD,FFTW_ESTIMATE);
80: bplan=fftw_mpi_plan_dft_c2r_3d(N0,N1,N2,(fftw_complex*)y_arr,(double*)z_arr,PETSC_COMM_WORLD,FFTW_ESTIMATE);
82: fftw_execute(fplan);
83: fftw_execute(bplan);
85: VecRestoreArray(fin,&x_arr);
86: VecRestoreArray(fout1,&z_arr);
87: VecRestoreArray(fout,&y_arr);
90: /* a = 1.0/(PetscReal)N_factor; */
91: /* VecScale(fout1,a); */
92: VecCreate(PETSC_COMM_WORLD,&ini);
93: VecCreate(PETSC_COMM_WORLD,&final);
94: VecSetSizes(ini,local_n0*N1*N2,N_factor);
95: VecSetSizes(final,local_n0*N1*N2,N_factor);
96: /* VecSetSizes(ini,PETSC_DECIDE,N_factor); */
97: /* VecSetSizes(final,PETSC_DECIDE,N_factor); */
98: VecSetFromOptions(ini);
99: VecSetFromOptions(final);
101: if (N2%2==0) NM=N2+2;
102: else NM=N2+1;
104: VecGetOwnershipRange(fin,&low,NULL);
105: printf("The local index is %d from %d\n",low,rank);
106: PetscMalloc(sizeof(PetscInt)*local_n0*N1*N2,&indx3);
107: PetscMalloc(sizeof(PetscInt)*local_n0*N1*N2,&indx4);
108: for (i=0; i<local_n0; i++) {
109: for (j=0;j<N1;j++) {
110: for (k=0;k<N2;k++) {
111: tempindx = i*N1*N2 + j*N2 + k;
112: tempindx1 = i*N1*NM + j*NM + k;
114: indx3[tempindx]=local_0_start*N1*N2+tempindx;
115: indx4[tempindx]=low+tempindx1;
116: }
117: /* printf("index3 %d from proc %d is \n",indx3[tempindx],rank); */
118: /* printf("index4 %d from proc %d is \n",indx4[tempindx],rank); */
119: }
120: }
121: VecGetValues(fin,local_n0*N1*N2,indx4,x_arr);
122: VecSetValues(ini,local_n0*N1*N2,indx3,x_arr,INSERT_VALUES);
123: VecAssemblyBegin(ini);
124: VecAssemblyEnd(ini);
126: VecGetValues(fout1,local_n0*N1*N2,indx4,y_arr);
127: VecSetValues(final,local_n0*N1*N2,indx3,y_arr,INSERT_VALUES);
128: VecAssemblyBegin(final);
129: VecAssemblyEnd(final);
131: printf("The local index value is %ld from %d",local_n0*N1*N2,rank);
132: /*
133: for (i=0;i<N0;i++) {
134: for (j=0;j<N1;j++) {
135: indx=i*N1*NM+j*NM;
136: ISCreateStride(PETSC_COMM_WORLD,N2,indx,1,&indx1);
137: indx=i*N1*N2+j*N2;
138: ISCreateStride(PETSC_COMM_WORLD,N2,indx,1,&indx2);
139: VecScatterCreate(fin,indx1,ini,indx2,&vecscat);
140: VecScatterBegin(vecscat,fin,ini,INSERT_VALUES,SCATTER_FORWARD);
141: VecScatterEnd(vecscat,fin,ini,INSERT_VALUES,SCATTER_FORWARD);
142: VecScatterCreate(fout1,indx1,final,indx2,&vecscat1);
143: VecScatterBegin(vecscat1,fout1,final,INSERT_VALUES,SCATTER_FORWARD);
144: VecScatterEnd(vecscat1,fout1,final,INSERT_VALUES,SCATTER_FORWARD);
145: }
146: }
147: */
148: a = 1.0/(PetscReal)N_factor;
149: VecScale(fout1,a);
150: VecScale(final,a);
152: VecAssemblyBegin(ini);
153: VecAssemblyEnd(ini);
155: VecAssemblyBegin(final);
156: VecAssemblyEnd(final);
158: /* VecView(final,PETSC_VIEWER_STDOUT_WORLD); */
159: VecAXPY(final,-1.0,ini);
160: VecNorm(final,NORM_1,&enorm);
161: PetscPrintf(PETSC_COMM_WORLD," Error norm of |x - z| = %e\n",enorm);
162: fftw_destroy_plan(fplan);
163: fftw_destroy_plan(bplan);
164: fftw_free(in1); VecDestroy(&fin);
165: fftw_free(out); VecDestroy(&fout);
166: fftw_free(in2); VecDestroy(&fout1);
168: PetscFinalize();
169: return 0;
170: }