Actual source code: petscsf.h

  1: /*
  2:    A star forest (SF) describes a communication pattern
  3: */
  4: #pragma once

  6: #include <petscsys.h>
  7: #include <petscsftypes.h>
  8: #include <petscvec.h>

 10: /* SUBMANSEC = PetscSF */

 12: PETSC_EXTERN PetscClassId PETSCSF_CLASSID;

 14: /*E
 15:    PetscSFPattern - Pattern of the `PetscSF` graph

 17:    Values:
 18: +  `PETSCSF_PATTERN_GENERAL`   - A general graph. One sets the graph with `PetscSFSetGraph()` and usually does not use this enum directly.
 19: .  `PETSCSF_PATTERN_ALLGATHER` - A graph that every rank gathers all roots from all ranks (like `MPI_Allgather()`). One sets the graph with `PetscSFSetGraphWithPattern()`.
 20: .  `PETSCSF_PATTERN_GATHER`    - A graph that rank 0 gathers all roots from all ranks (like `MPI_Gatherv()` with root=0). One sets the graph with `PetscSFSetGraphWithPattern()`.
 21: -  `PETSCSF_PATTERN_ALLTOALL`  - A graph that every rank gathers different roots from all ranks (like `MPI_Alltoall()`). One sets the graph with `PetscSFSetGraphWithPattern()`.
 22:                                  In an ALLTOALL graph, we assume each process has <size> leaves and <size> roots, with each leaf connecting to a remote root. Here <size> is
 23:                                  the size of the communicator. This does not mean one can not communicate multiple data items between a pair of processes. One just needs to
 24:                                  create a new MPI datatype for the multiple data items, e.g., by `MPI_Type_contiguous`.
 25:    Level: beginner

 27: .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`
 28: E*/
 29: typedef enum {
 30:   PETSCSF_PATTERN_GENERAL = 0,
 31:   PETSCSF_PATTERN_ALLGATHER,
 32:   PETSCSF_PATTERN_GATHER,
 33:   PETSCSF_PATTERN_ALLTOALL
 34: } PetscSFPattern;

 36: /*E
 37:     PetscSFWindowSyncType - Type of synchronization for `PETSCSFWINDOW`

 39:    Values:
 40: +  `PETSCSF_WINDOW_SYNC_FENCE`  - simplest model, synchronizing across communicator
 41: .  `PETSCSF_WINDOW_SYNC_LOCK`   - passive model, less synchronous, requires less setup than `PETSCSF_WINDOW_SYNC_ACTIVE`, but may require more handshakes
 42: -  `PETSCSF_WINDOW_SYNC_ACTIVE` - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than `PETSCSF_WINDOW_SYNC_LOCK`)

 44:    Level: advanced

 46: .seealso: `PetscSF`, `PetscSFWindowSetSyncType()`, `PetscSFWindowGetSyncType()`
 47: E*/
 48: typedef enum {
 49:   PETSCSF_WINDOW_SYNC_FENCE,
 50:   PETSCSF_WINDOW_SYNC_LOCK,
 51:   PETSCSF_WINDOW_SYNC_ACTIVE
 52: } PetscSFWindowSyncType;
 53: PETSC_EXTERN const char *const PetscSFWindowSyncTypes[];

 55: /*E
 56:     PetscSFWindowFlavorType - Flavor for the creation of MPI windows for `PETSCSFWINDOW`

 58:     Values:
 59: +  `PETSCSF_WINDOW_FLAVOR_CREATE`   - Use `MPI_Win_create()`, no reuse
 60: .  `PETSCSF_WINDOW_FLAVOR_DYNAMIC`  - Use `MPI_Win_create_dynamic()` and dynamically attach pointers
 61: .  `PETSCSF_WINDOW_FLAVOR_ALLOCATE` - Use `MPI_Win_allocate()`
 62: -  `PETSCSF_WINDOW_FLAVOR_SHARED`   - Use `MPI_Win_allocate_shared()`

 64:    Level: advanced

 66: .seealso: `PetscSF`, `PetscSFWindowSetFlavorType()`, `PetscSFWindowGetFlavorType()`
 67: E*/
 68: typedef enum {
 69:   PETSCSF_WINDOW_FLAVOR_CREATE,
 70:   PETSCSF_WINDOW_FLAVOR_DYNAMIC,
 71:   PETSCSF_WINDOW_FLAVOR_ALLOCATE,
 72:   PETSCSF_WINDOW_FLAVOR_SHARED
 73: } PetscSFWindowFlavorType;
 74: PETSC_EXTERN const char *const PetscSFWindowFlavorTypes[];

 76: /*E
 77:     PetscSFDuplicateOption - Aspects to preserve when duplicating a `PetscSF`

 79:    Values:
 80: +  `PETSCSF_DUPLICATE_CONFONLY` - configuration only, user must call `PetscSFSetGraph()`
 81: .  `PETSCSF_DUPLICATE_RANKS`    - communication ranks preserved, but different graph (allows simpler setup after calling `PetscSFSetGraph()`)
 82: -  `PETSCSF_DUPLICATE_GRAPH`    - entire graph duplicated

 84:    Level: beginner

 86: .seealso: `PetscSF`, `PetscSFDuplicate()`
 87: E*/
 88: typedef enum {
 89:   PETSCSF_DUPLICATE_CONFONLY,
 90:   PETSCSF_DUPLICATE_RANKS,
 91:   PETSCSF_DUPLICATE_GRAPH
 92: } PetscSFDuplicateOption;
 93: PETSC_EXTERN const char *const PetscSFDuplicateOptions[];

 95: /*E
 96:     PetscSFConcatenateRootMode - Modes of root concatenation when concatenating `PetscSF`s

 98:    Values:
 99: +  `PETSCSF_CONCATENATE_ROOTMODE_LOCAL`  - concatenate root spaces locally (separately on each rank)
100: .  `PETSCSF_CONCATENATE_ROOTMODE_SHARED` - do not concatenate roots; root space is considered the same for each input `PetscSF` (checked in debug mode)
101: -  `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` - concatenate root spaces globally

103:    Level: advanced

105: .seealso: `PetscSF`, `PetscSFConcatenate()`
106: E*/
107: typedef enum {
108:   PETSCSF_CONCATENATE_ROOTMODE_LOCAL,
109:   PETSCSF_CONCATENATE_ROOTMODE_SHARED,
110:   PETSCSF_CONCATENATE_ROOTMODE_GLOBAL,
111: } PetscSFConcatenateRootMode;
112: PETSC_EXTERN const char *const PetscSFConcatenateRootModes[];

114: PETSC_EXTERN PetscFunctionList PetscSFList;
115: PETSC_EXTERN PetscErrorCode    PetscSFRegister(const char[], PetscErrorCode (*)(PetscSF));

117: PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void);
118: PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void);
119: PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm, PetscSF *);
120: PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF *);
121: PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF, PetscSFType);
122: PETSC_EXTERN PetscErrorCode PetscSFGetType(PetscSF, PetscSFType *);
123: PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF, PetscViewer);
124: PETSC_EXTERN PetscErrorCode PetscSFViewFromOptions(PetscSF, PetscObject, const char[]);
125: PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF);
126: PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF);
127: PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF, PetscSFDuplicateOption, PetscSF *);
128: PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF, PetscSFWindowSyncType);
129: PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF, PetscSFWindowSyncType *);
130: PETSC_EXTERN PetscErrorCode PetscSFWindowSetFlavorType(PetscSF, PetscSFWindowFlavorType);
131: PETSC_EXTERN PetscErrorCode PetscSFWindowGetFlavorType(PetscSF, PetscSFWindowFlavorType *);
132: PETSC_EXTERN PetscErrorCode PetscSFWindowSetInfo(PetscSF, MPI_Info);
133: PETSC_EXTERN PetscErrorCode PetscSFWindowGetInfo(PetscSF, MPI_Info *);
134: PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF, PetscBool);
135: PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF, PetscInt, PetscInt, PetscInt *, PetscCopyMode, PetscSFNode *, PetscCopyMode);
136: PETSC_EXTERN PetscErrorCode PetscSFSetGraphWithPattern(PetscSF, PetscLayout, PetscSFPattern);
137: PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF, PetscInt *, PetscInt *, const PetscInt **, const PetscSFNode **);
138: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF, PetscInt *, PetscInt *);
139: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF, PetscInt, const PetscInt *, PetscSF *);
140: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF, PetscInt, const PetscInt *, PetscSF *);
141: PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF);
142: PETSC_EXTERN PetscErrorCode PetscSFSetUpRanks(PetscSF, MPI_Group);
143: PETSC_EXTERN PetscErrorCode PetscSFGetRootRanks(PetscSF, PetscInt *, const PetscMPIInt **, const PetscInt **, const PetscInt **, const PetscInt **);
144: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRanks(PetscSF, PetscInt *, const PetscMPIInt **, const PetscInt **, const PetscInt **);
145: PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF, MPI_Group *, MPI_Group *);
146: PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF, PetscSF *);
147: PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF, PetscSF *);
148: PETSC_EXTERN PetscErrorCode PetscSFConcatenate(MPI_Comm, PetscInt, PetscSF[], PetscSFConcatenateRootMode, PetscInt[], PetscSF *);

150: /* Build PetscSF from PetscLayout */
151: PETSC_EXTERN PetscErrorCode PetscSFSetGraphLayout(PetscSF, PetscLayout, PetscInt, PetscInt *, PetscCopyMode, const PetscInt *);
152: PETSC_EXTERN PetscErrorCode PetscSFGetGraphLayout(PetscSF, PetscLayout *, PetscInt *, const PetscInt *[], PetscInt *[]);
153: PETSC_EXTERN PetscErrorCode PetscSFCreateFromLayouts(PetscLayout, PetscLayout, PetscSF *);
154: PETSC_EXTERN PetscErrorCode PetscSFCreateByMatchingIndices(PetscLayout, PetscInt, const PetscInt *, const PetscInt *, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscInt, PetscSF *, PetscSF *);
155: PETSC_EXTERN PetscErrorCode PetscSFMerge(PetscSF, PetscSF, PetscSF *);
156: PETSC_EXTERN PetscErrorCode PetscSFSetGraphFromCoordinates(PetscSF, PetscInt, PetscInt, PetscInt, PetscReal, const PetscReal *, const PetscReal *);

158: /* PetscSection interoperability */
159: PETSC_EXTERN PetscErrorCode PetscSFSetGraphSection(PetscSF, PetscSection, PetscSection);
160: PETSC_EXTERN PetscErrorCode PetscSFCreateRemoteOffsets(PetscSF, PetscSection, PetscSection, PetscInt **);
161: PETSC_EXTERN PetscErrorCode PetscSFDistributeSection(PetscSF, PetscSection, PetscInt **, PetscSection);
162: PETSC_EXTERN PetscErrorCode PetscSFCreateSectionSF(PetscSF, PetscSection, PetscInt[], PetscSection, PetscSF *);

164: /* Reduce rootdata to leafdata using provided operation */
165: PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
166: PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
167: PETSC_EXTERN PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF, MPI_Datatype, PetscMemType, const void *, PetscMemType, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(6, 2);

169: /* Reduce leafdata into rootdata using provided operation */
170: PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
171: PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
172: PETSC_EXTERN PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF, MPI_Datatype, PetscMemType, const void *, PetscMemType, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(6, 2);

174: /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */
175: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF, MPI_Datatype, void *, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(5, 2);
176: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF, MPI_Datatype, void *, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(5, 2);

178: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF, MPI_Datatype, PetscMemType, void *, PetscMemType, const void *, PetscMemType, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(6, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(8, 2);

180: /* Compute the degree of every root vertex (number of leaves in its star) */
181: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF, const PetscInt **);
182: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF, const PetscInt **);
183: PETSC_EXTERN PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF, const PetscInt[], PetscInt *, PetscInt *[]);
184: /* Concatenate data from all leaves into roots */
185: PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
186: PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
187: /* Distribute distinct values to each leaf from roots */
188: PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);
189: PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2);

191: PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF, PetscSF, PetscSF *);
192: PETSC_EXTERN PetscErrorCode PetscSFComposeInverse(PetscSF, PetscSF, PetscSF *);

194: #define MPIU_REPLACE MPI_REPLACE PETSC_DEPRECATED_MACRO(3, 15, 0, "MPI_REPLACE", )

196: PETSC_DEPRECATED_FUNCTION(3, 12, 0, "PetscSFGetRootRanks()", )
197: static inline PetscErrorCode PetscSFGetRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote)
198: {
199:   return PetscSFGetRootRanks(sf, nranks, ranks, roffset, rmine, rremote);
200: }

202: PETSC_DEPRECATED_FUNCTION(3, 15, 0, "PetscSFCreateEmbeddedRootSF()", )
203: static inline PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf)
204: {
205:   return PetscSFCreateEmbeddedRootSF(sf, nselected, selected, esf);
206: }

208: PETSC_DEPRECATED_FUNCTION(3, 15, 0, "PetscSFBcastBegin()", )
209: static inline PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op)
210: {
211:   return PetscSFBcastBegin(sf, unit, rootdata, leafdata, op);
212: }

214: PETSC_DEPRECATED_FUNCTION(3, 15, 0, "PetscSFBcastEnd()", )
215: static inline PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op)
216: {
217:   return PetscSFBcastEnd(sf, unit, rootdata, leafdata, op);
218: }

220: PETSC_DEPRECATED_FUNCTION(3, 15, 0, "PetscSFBcastWithMemTypeBegin()", )
221: static inline PetscErrorCode PetscSFBcastAndOpWithMemtypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op)
222: {
223:   return PetscSFBcastWithMemTypeBegin(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op);
224: }