Actual source code: matnull.c
2: /*
3: Routines to project vectors out of null spaces.
4: */
6: #include <petsc/private/matimpl.h>
8: PetscClassId MAT_NULLSPACE_CLASSID;
10: /*@C
11: MatNullSpaceSetFunction - set a function that removes a null space from a vector
12: out of null spaces.
14: Logically Collective on MatNullSpace
16: Input Parameters:
17: + sp - the null space object
18: . rem - the function that removes the null space
19: - ctx - context for the remove function
21: Level: advanced
23: .seealso: MatNullSpaceDestroy(), MatNullSpaceRemove(), MatSetNullSpace(), MatNullSpace, MatNullSpaceCreate()
24: @*/
25: PetscErrorCode MatNullSpaceSetFunction(MatNullSpace sp, PetscErrorCode (*rem)(MatNullSpace,Vec,void*),void *ctx)
26: {
29: sp->remove = rem;
30: sp->rmctx = ctx;
31: return(0);
32: }
34: /*@C
35: MatNullSpaceGetVecs - get vectors defining the null space
37: Not Collective
39: Input Arguments:
40: . sp - null space object
42: Output Arguments:
43: + has_cnst - PETSC_TRUE if the null space contains the constant vector, otherwise PETSC_FALSE
44: . n - number of vectors (excluding constant vector) in null space
45: - vecs - orthonormal vectors that span the null space (excluding the constant vector)
47: Level: developer
49: Notes:
50: These vectors and the array are owned by the MatNullSpace and should not be destroyed or freeded by the caller
52: .seealso: MatNullSpaceCreate(), MatGetNullSpace(), MatGetNearNullSpace()
53: @*/
54: PetscErrorCode MatNullSpaceGetVecs(MatNullSpace sp,PetscBool *has_const,PetscInt *n,const Vec **vecs)
55: {
59: if (has_const) *has_const = sp->has_cnst;
60: if (n) *n = sp->n;
61: if (vecs) *vecs = sp->vecs;
62: return(0);
63: }
65: /*@
66: MatNullSpaceCreateRigidBody - create rigid body modes from coordinates
68: Collective on Vec
70: Input Argument:
71: . coords - block of coordinates of each node, must have block size set
73: Output Argument:
74: . sp - the null space
76: Level: advanced
78: Notes:
79: If you are solving an elasticity problem you should likely use this, in conjunction with MatSetNearNullspace(), to provide information that
80: the PCGAMG preconditioner can use to construct a much more efficient preconditioner.
82: If you are solving an elasticity problem with pure Neumann boundary conditions you can use this in conjunction with MatSetNullspace() to
83: provide this information to the linear solver so it can handle the null space appropriately in the linear solution.
86: .seealso: MatNullSpaceCreate(), MatSetNearNullspace(), MatSetNullspace()
87: @*/
88: PetscErrorCode MatNullSpaceCreateRigidBody(Vec coords,MatNullSpace *sp)
89: {
90: PetscErrorCode ierr;
91: const PetscScalar *x;
92: PetscScalar *v[6],dots[5];
93: Vec vec[6];
94: PetscInt n,N,dim,nmodes,i,j;
95: PetscReal sN;
98: VecGetBlockSize(coords,&dim);
99: VecGetLocalSize(coords,&n);
100: VecGetSize(coords,&N);
101: n /= dim;
102: N /= dim;
103: sN = 1./PetscSqrtReal((PetscReal)N);
104: switch (dim) {
105: case 1:
106: MatNullSpaceCreate(PetscObjectComm((PetscObject)coords),PETSC_TRUE,0,NULL,sp);
107: break;
108: case 2:
109: case 3:
110: nmodes = (dim == 2) ? 3 : 6;
111: VecCreate(PetscObjectComm((PetscObject)coords),&vec[0]);
112: VecSetSizes(vec[0],dim*n,dim*N);
113: VecSetBlockSize(vec[0],dim);
114: VecSetUp(vec[0]);
115: for (i=1; i<nmodes; i++) {VecDuplicate(vec[0],&vec[i]);}
116: for (i=0; i<nmodes; i++) {VecGetArray(vec[i],&v[i]);}
117: VecGetArrayRead(coords,&x);
118: for (i=0; i<n; i++) {
119: if (dim == 2) {
120: v[0][i*2+0] = sN;
121: v[0][i*2+1] = 0.;
122: v[1][i*2+0] = 0.;
123: v[1][i*2+1] = sN;
124: /* Rotations */
125: v[2][i*2+0] = -x[i*2+1];
126: v[2][i*2+1] = x[i*2+0];
127: } else {
128: v[0][i*3+0] = sN;
129: v[0][i*3+1] = 0.;
130: v[0][i*3+2] = 0.;
131: v[1][i*3+0] = 0.;
132: v[1][i*3+1] = sN;
133: v[1][i*3+2] = 0.;
134: v[2][i*3+0] = 0.;
135: v[2][i*3+1] = 0.;
136: v[2][i*3+2] = sN;
138: v[3][i*3+0] = x[i*3+1];
139: v[3][i*3+1] = -x[i*3+0];
140: v[3][i*3+2] = 0.;
141: v[4][i*3+0] = 0.;
142: v[4][i*3+1] = -x[i*3+2];
143: v[4][i*3+2] = x[i*3+1];
144: v[5][i*3+0] = x[i*3+2];
145: v[5][i*3+1] = 0.;
146: v[5][i*3+2] = -x[i*3+0];
147: }
148: }
149: for (i=0; i<nmodes; i++) {VecRestoreArray(vec[i],&v[i]);}
150: VecRestoreArrayRead(coords,&x);
151: for (i=dim; i<nmodes; i++) {
152: /* Orthonormalize vec[i] against vec[0:i-1] */
153: VecMDot(vec[i],i,vec,dots);
154: for (j=0; j<i; j++) dots[j] *= -1.;
155: VecMAXPY(vec[i],i,dots,vec);
156: VecNormalize(vec[i],NULL);
157: }
158: MatNullSpaceCreate(PetscObjectComm((PetscObject)coords),PETSC_FALSE,nmodes,vec,sp);
159: for (i=0; i<nmodes; i++) {VecDestroy(&vec[i]);}
160: }
161: return(0);
162: }
164: /*@C
165: MatNullSpaceView - Visualizes a null space object.
167: Collective on MatNullSpace
169: Input Parameters:
170: + matnull - the null space
171: - viewer - visualization context
173: Level: advanced
175: Fortran Note:
176: This routine is not supported in Fortran.
178: .seealso: MatNullSpaceCreate(), PetscViewerASCIIOpen()
179: @*/
180: PetscErrorCode MatNullSpaceView(MatNullSpace sp,PetscViewer viewer)
181: {
183: PetscBool iascii;
187: if (!viewer) {
188: PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sp),&viewer);
189: }
193: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);
194: if (iascii) {
195: PetscViewerFormat format;
196: PetscInt i;
197: PetscViewerGetFormat(viewer,&format);
198: PetscObjectPrintClassNamePrefixType((PetscObject)sp,viewer);
199: PetscViewerASCIIPushTab(viewer);
200: PetscViewerASCIIPrintf(viewer,"Contains %D vector%s%s\n",sp->n,sp->n==1 ? "" : "s",sp->has_cnst ? " and the constant" : "");
201: if (sp->remove) {PetscViewerASCIIPrintf(viewer,"Has user-provided removal function\n");}
202: if (!(format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL)) {
203: for (i=0; i<sp->n; i++) {
204: VecView(sp->vecs[i],viewer);
205: }
206: }
207: PetscViewerASCIIPopTab(viewer);
208: }
209: return(0);
210: }
212: /*@C
213: MatNullSpaceCreate - Creates a data structure used to project vectors
214: out of null spaces.
216: Collective
218: Input Parameters:
219: + comm - the MPI communicator associated with the object
220: . has_cnst - PETSC_TRUE if the null space contains the constant vector; otherwise PETSC_FALSE
221: . n - number of vectors (excluding constant vector) in null space
222: - vecs - the vectors that span the null space (excluding the constant vector);
223: these vectors must be orthonormal. These vectors are NOT copied, so do not change them
224: after this call. You should free the array that you pass in and destroy the vectors (this will reduce the reference count
225: for them by one).
227: Output Parameter:
228: . SP - the null space context
230: Level: advanced
232: Notes:
233: See MatNullSpaceSetFunction() as an alternative way of providing the null space information instead of setting vecs.
235: If has_cnst is PETSC_TRUE you do not need to pass a constant vector in as a fourth argument to this routine, nor do you
236: need to pass in a function that eliminates the constant function into MatNullSpaceSetFunction().
238: Users manual sections:
239: . sec_singular
241: .seealso: MatNullSpaceDestroy(), MatNullSpaceRemove(), MatSetNullSpace(), MatNullSpace, MatNullSpaceSetFunction()
242: @*/
243: PetscErrorCode MatNullSpaceCreate(MPI_Comm comm,PetscBool has_cnst,PetscInt n,const Vec vecs[],MatNullSpace *SP)
244: {
245: MatNullSpace sp;
247: PetscInt i;
250: if (n < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Number of vectors (given %D) cannot be negative",n);
254: if (n) {
255: for (i=0; i<n; i++) {
256: /* prevent the user from changes values in the vector */
257: VecLockReadPush(vecs[i]);
258: }
259: }
260: if (PetscUnlikelyDebug(n)) {
261: PetscScalar *dots;
262: for (i=0; i<n; i++) {
263: PetscReal norm;
264: VecNorm(vecs[i],NORM_2,&norm);
265: if (PetscAbsReal(norm - 1) > PETSC_SQRT_MACHINE_EPSILON) SETERRQ2(PetscObjectComm((PetscObject)vecs[i]),PETSC_ERR_ARG_WRONG,"Vector %D must have 2-norm of 1.0, it is %g",i,(double)norm);
266: }
267: if (has_cnst) {
268: for (i=0; i<n; i++) {
269: PetscScalar sum;
270: VecSum(vecs[i],&sum);
271: if (PetscAbsScalar(sum) > PETSC_SQRT_MACHINE_EPSILON) SETERRQ2(PetscObjectComm((PetscObject)vecs[i]),PETSC_ERR_ARG_WRONG,"Vector %D must be orthogonal to constant vector, inner product is %g",i,(double)PetscAbsScalar(sum));
272: }
273: }
274: PetscMalloc1(n-1,&dots);
275: for (i=0; i<n-1; i++) {
276: PetscInt j;
277: VecMDot(vecs[i],n-i-1,vecs+i+1,dots);
278: for (j=0;j<n-i-1;j++) {
279: if (PetscAbsScalar(dots[j]) > PETSC_SQRT_MACHINE_EPSILON) SETERRQ3(PetscObjectComm((PetscObject)vecs[i]),PETSC_ERR_ARG_WRONG,"Vector %D must be orthogonal to vector %D, inner product is %g",i,i+j+1,(double)PetscAbsScalar(dots[j]));
280: }
281: }
282: PetscFree(dots);
283: }
285: *SP = NULL;
286: MatInitializePackage();
288: PetscHeaderCreate(sp,MAT_NULLSPACE_CLASSID,"MatNullSpace","Null space","Mat",comm,MatNullSpaceDestroy,MatNullSpaceView);
290: sp->has_cnst = has_cnst;
291: sp->n = n;
292: sp->vecs = NULL;
293: sp->alpha = NULL;
294: sp->remove = NULL;
295: sp->rmctx = NULL;
297: if (n) {
298: PetscMalloc1(n,&sp->vecs);
299: PetscMalloc1(n,&sp->alpha);
300: PetscLogObjectMemory((PetscObject)sp,n*(sizeof(Vec)+sizeof(PetscScalar)));
301: for (i=0; i<n; i++) {
302: PetscObjectReference((PetscObject)vecs[i]);
303: sp->vecs[i] = vecs[i];
304: }
305: }
307: *SP = sp;
308: return(0);
309: }
311: /*@
312: MatNullSpaceDestroy - Destroys a data structure used to project vectors
313: out of null spaces.
315: Collective on MatNullSpace
317: Input Parameter:
318: . sp - the null space context to be destroyed
320: Level: advanced
322: .seealso: MatNullSpaceCreate(), MatNullSpaceRemove(), MatNullSpaceSetFunction()
323: @*/
324: PetscErrorCode MatNullSpaceDestroy(MatNullSpace *sp)
325: {
327: PetscInt i;
330: if (!*sp) return(0);
332: if (--((PetscObject)(*sp))->refct > 0) {*sp = NULL; return(0);}
334: for (i=0; i < (*sp)->n; i++) {
335: VecLockReadPop((*sp)->vecs[i]);
336: }
338: VecDestroyVecs((*sp)->n,&(*sp)->vecs);
339: PetscFree((*sp)->alpha);
340: PetscHeaderDestroy(sp);
341: return(0);
342: }
344: /*@C
345: MatNullSpaceRemove - Removes all the components of a null space from a vector.
347: Collective on MatNullSpace
349: Input Parameters:
350: + sp - the null space context (if this is NULL then no null space is removed)
351: - vec - the vector from which the null space is to be removed
353: Level: advanced
355: .seealso: MatNullSpaceCreate(), MatNullSpaceDestroy(), MatNullSpaceSetFunction()
356: @*/
357: PetscErrorCode MatNullSpaceRemove(MatNullSpace sp,Vec vec)
358: {
359: PetscScalar sum;
360: PetscInt i,N;
364: if (!sp) return(0);
368: if (sp->has_cnst) {
369: VecGetSize(vec,&N);
370: if (N > 0) {
371: VecSum(vec,&sum);
372: sum = sum/((PetscScalar)(-1.0*N));
373: VecShift(vec,sum);
374: }
375: }
377: if (sp->n) {
378: VecMDot(vec,sp->n,sp->vecs,sp->alpha);
379: for (i=0; i<sp->n; i++) sp->alpha[i] = -sp->alpha[i];
380: VecMAXPY(vec,sp->n,sp->alpha,sp->vecs);
381: }
383: if (sp->remove) {
384: (*sp->remove)(sp,vec,sp->rmctx);
385: }
386: return(0);
387: }
389: /*@
390: MatNullSpaceTest - Tests if the claimed null space is really a
391: null space of a matrix
393: Collective on MatNullSpace
395: Input Parameters:
396: + sp - the null space context
397: - mat - the matrix
399: Output Parameters:
400: . isNull - PETSC_TRUE if the nullspace is valid for this matrix
402: Level: advanced
404: .seealso: MatNullSpaceCreate(), MatNullSpaceDestroy(), MatNullSpaceSetFunction()
405: @*/
406: PetscErrorCode MatNullSpaceTest(MatNullSpace sp,Mat mat,PetscBool *isNull)
407: {
408: PetscScalar sum;
409: PetscReal nrm,tol = 10. * PETSC_SQRT_MACHINE_EPSILON;
410: PetscInt j,n,N;
412: Vec l,r;
413: PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,consistent = PETSC_TRUE;
414: PetscViewer viewer;
419: n = sp->n;
420: PetscOptionsGetBool(((PetscObject)sp)->options,((PetscObject)mat)->prefix,"-mat_null_space_test_view",&flg1,NULL);
421: PetscOptionsGetBool(((PetscObject)sp)->options,((PetscObject)mat)->prefix,"-mat_null_space_test_view_draw",&flg2,NULL);
423: if (n) {
424: VecDuplicate(sp->vecs[0],&l);
425: } else {
426: MatCreateVecs(mat,&l,NULL);
427: }
429: PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sp),&viewer);
430: if (sp->has_cnst) {
431: VecDuplicate(l,&r);
432: VecGetSize(l,&N);
433: sum = 1.0/N;
434: VecSet(l,sum);
435: MatMult(mat,l,r);
436: VecNorm(r,NORM_2,&nrm);
437: if (nrm >= tol) consistent = PETSC_FALSE;
438: if (flg1) {
439: if (consistent) {
440: PetscPrintf(PetscObjectComm((PetscObject)sp),"Constants are likely null vector");
441: } else {
442: PetscPrintf(PetscObjectComm((PetscObject)sp),"Constants are unlikely null vector ");
443: }
444: PetscPrintf(PetscObjectComm((PetscObject)sp),"|| A * 1/N || = %g\n",(double)nrm);
445: }
446: if (!consistent && flg1) {VecView(r,viewer);}
447: if (!consistent && flg2) {VecView(r,viewer);}
448: VecDestroy(&r);
449: }
451: for (j=0; j<n; j++) {
452: (*mat->ops->mult)(mat,sp->vecs[j],l);
453: VecNorm(l,NORM_2,&nrm);
454: if (nrm >= tol) consistent = PETSC_FALSE;
455: if (flg1) {
456: if (consistent) {
457: PetscPrintf(PetscObjectComm((PetscObject)sp),"Null vector %D is likely null vector",j);
458: } else {
459: PetscPrintf(PetscObjectComm((PetscObject)sp),"Null vector %D unlikely null vector ",j);
460: consistent = PETSC_FALSE;
461: }
462: PetscPrintf(PetscObjectComm((PetscObject)sp),"|| A * v[%D] || = %g\n",j,(double)nrm);
463: }
464: if (!consistent && flg1) {VecView(l,viewer);}
465: if (!consistent && flg2) {VecView(l,viewer);}
466: }
468: if (sp->remove) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Cannot test a null space provided as a function with MatNullSpaceSetFunction()");
469: VecDestroy(&l);
470: if (isNull) *isNull = consistent;
471: return(0);
472: }