Actual source code: bvec2.c
petsc-3.10.5 2019-03-28
2: /*
3: Implements the sequential vectors.
4: */
6: #include <../src/vec/vec/impls/dvecimpl.h>
7: #include <../src/vec/vec/impls/mpi/pvecimpl.h> /* For VecView_MPI_HDF5 */
8: #include <petsc/private/glvisviewerimpl.h>
9: #include <petsc/private/glvisvecimpl.h>
10: #include <petscblaslapack.h>
12: #if defined(PETSC_HAVE_HDF5)
13: extern PetscErrorCode VecView_MPI_HDF5(Vec,PetscViewer);
14: #endif
16: PetscErrorCode VecPointwiseMax_Seq(Vec win,Vec xin,Vec yin)
17: {
19: PetscInt n = win->map->n,i;
20: PetscScalar *ww,*xx,*yy; /* cannot make xx or yy const since might be ww */
23: VecGetArrayRead(xin,(const PetscScalar**)&xx);
24: VecGetArrayRead(yin,(const PetscScalar**)&yy);
25: VecGetArray(win,&ww);
27: for (i=0; i<n; i++) ww[i] = PetscMax(PetscRealPart(xx[i]),PetscRealPart(yy[i]));
29: VecRestoreArrayRead(xin,(const PetscScalar**)&xx);
30: VecRestoreArrayRead(yin,(const PetscScalar**)&yy);
31: VecRestoreArray(win,&ww);
32: PetscLogFlops(n);
33: return(0);
34: }
36: PetscErrorCode VecPointwiseMin_Seq(Vec win,Vec xin,Vec yin)
37: {
39: PetscInt n = win->map->n,i;
40: PetscScalar *ww,*xx,*yy; /* cannot make xx or yy const since might be ww */
43: VecGetArrayRead(xin,(const PetscScalar**)&xx);
44: VecGetArrayRead(yin,(const PetscScalar**)&yy);
45: VecGetArray(win,&ww);
47: for (i=0; i<n; i++) ww[i] = PetscMin(PetscRealPart(xx[i]),PetscRealPart(yy[i]));
49: VecRestoreArrayRead(xin,(const PetscScalar**)&xx);
50: VecRestoreArrayRead(yin,(const PetscScalar**)&yy);
51: VecRestoreArray(win,&ww);
52: PetscLogFlops(n);
53: return(0);
54: }
56: PetscErrorCode VecPointwiseMaxAbs_Seq(Vec win,Vec xin,Vec yin)
57: {
59: PetscInt n = win->map->n,i;
60: PetscScalar *ww,*xx,*yy; /* cannot make xx or yy const since might be ww */
63: VecGetArrayRead(xin,(const PetscScalar**)&xx);
64: VecGetArrayRead(yin,(const PetscScalar**)&yy);
65: VecGetArray(win,&ww);
67: for (i=0; i<n; i++) ww[i] = PetscMax(PetscAbsScalar(xx[i]),PetscAbsScalar(yy[i]));
69: PetscLogFlops(n);
70: VecRestoreArrayRead(xin,(const PetscScalar**)&xx);
71: VecRestoreArrayRead(yin,(const PetscScalar**)&yy);
72: VecRestoreArray(win,&ww);
73: return(0);
74: }
76: #include <../src/vec/vec/impls/seq/ftn-kernels/fxtimesy.h>
78: PetscErrorCode VecPointwiseMult_Seq(Vec win,Vec xin,Vec yin)
79: {
81: PetscInt n = win->map->n,i;
82: PetscScalar *ww,*xx,*yy; /* cannot make xx or yy const since might be ww */
85: VecGetArrayRead(xin,(const PetscScalar**)&xx);
86: VecGetArrayRead(yin,(const PetscScalar**)&yy);
87: VecGetArray(win,&ww);
88: if (ww == xx) {
89: for (i=0; i<n; i++) ww[i] *= yy[i];
90: } else if (ww == yy) {
91: for (i=0; i<n; i++) ww[i] *= xx[i];
92: } else {
93: #if defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY)
94: fortranxtimesy_(xx,yy,ww,&n);
95: #else
96: for (i=0; i<n; i++) ww[i] = xx[i] * yy[i];
97: #endif
98: }
99: VecRestoreArrayRead(xin,(const PetscScalar**)&xx);
100: VecRestoreArrayRead(yin,(const PetscScalar**)&yy);
101: VecRestoreArray(win,&ww);
102: PetscLogFlops(n);
103: return(0);
104: }
106: PetscErrorCode VecPointwiseDivide_Seq(Vec win,Vec xin,Vec yin)
107: {
109: PetscInt n = win->map->n,i;
110: PetscScalar *ww,*xx,*yy; /* cannot make xx or yy const since might be ww */
113: VecGetArrayRead(xin,(const PetscScalar**)&xx);
114: VecGetArrayRead(yin,(const PetscScalar**)&yy);
115: VecGetArray(win,&ww);
117: for (i=0; i<n; i++) {
118: if (yy[i] != 0.0) ww[i] = xx[i] / yy[i];
119: else ww[i] = 0.0;
120: }
122: PetscLogFlops(n);
123: VecRestoreArrayRead(xin,(const PetscScalar**)&xx);
124: VecRestoreArrayRead(yin,(const PetscScalar**)&yy);
125: VecRestoreArray(win,&ww);
126: return(0);
127: }
129: PetscErrorCode VecSetRandom_Seq(Vec xin,PetscRandom r)
130: {
132: PetscInt n = xin->map->n,i;
133: PetscScalar *xx;
136: VecGetArray(xin,&xx);
137: for (i=0; i<n; i++) {PetscRandomGetValue(r,&xx[i]);}
138: VecRestoreArray(xin,&xx);
139: return(0);
140: }
142: PetscErrorCode VecGetSize_Seq(Vec vin,PetscInt *size)
143: {
145: *size = vin->map->n;
146: return(0);
147: }
151: PetscErrorCode VecConjugate_Seq(Vec xin)
152: {
153: PetscScalar *x;
154: PetscInt n = xin->map->n;
158: VecGetArray(xin,&x);
159: while (n-->0) {
160: *x = PetscConj(*x);
161: x++;
162: }
163: VecRestoreArray(xin,&x);
164: return(0);
165: }
167: PetscErrorCode VecResetArray_Seq(Vec vin)
168: {
169: Vec_Seq *v = (Vec_Seq*)vin->data;
172: v->array = v->unplacedarray;
173: v->unplacedarray = 0;
174: return(0);
175: }
177: PetscErrorCode VecCopy_Seq(Vec xin,Vec yin)
178: {
179: PetscScalar *ya;
180: const PetscScalar *xa;
181: PetscErrorCode ierr;
184: if (xin != yin) {
185: VecGetArrayRead(xin,&xa);
186: VecGetArray(yin,&ya);
187: PetscMemcpy(ya,xa,xin->map->n*sizeof(PetscScalar));
188: VecRestoreArrayRead(xin,&xa);
189: VecRestoreArray(yin,&ya);
190: }
191: return(0);
192: }
194: PetscErrorCode VecSwap_Seq(Vec xin,Vec yin)
195: {
196: PetscScalar *ya, *xa;
198: PetscBLASInt one = 1,bn;
201: if (xin != yin) {
202: PetscBLASIntCast(xin->map->n,&bn);
203: VecGetArray(xin,&xa);
204: VecGetArray(yin,&ya);
205: PetscStackCallBLAS("BLASswap",BLASswap_(&bn,xa,&one,ya,&one));
206: VecRestoreArray(xin,&xa);
207: VecRestoreArray(yin,&ya);
208: }
209: return(0);
210: }
212: #include <../src/vec/vec/impls/seq/ftn-kernels/fnorm.h>
214: PetscErrorCode VecNorm_Seq(Vec xin,NormType type,PetscReal *z)
215: {
216: const PetscScalar *xx;
217: PetscErrorCode ierr;
218: PetscInt n = xin->map->n;
219: PetscBLASInt one = 1, bn;
222: PetscBLASIntCast(n,&bn);
223: if (type == NORM_2 || type == NORM_FROBENIUS) {
224: VecGetArrayRead(xin,&xx);
225: #if defined(PETSC_USE_REAL___FP16)
226: *z = BLASnrm2_(&bn,xx,&one);
227: #else
228: *z = PetscRealPart(BLASdot_(&bn,xx,&one,xx,&one));
229: *z = PetscSqrtReal(*z);
230: #endif
231: VecRestoreArrayRead(xin,&xx);
232: PetscLogFlops(PetscMax(2.0*n-1,0.0));
233: } else if (type == NORM_INFINITY) {
234: PetscInt i;
235: PetscReal max = 0.0,tmp;
237: VecGetArrayRead(xin,&xx);
238: for (i=0; i<n; i++) {
239: if ((tmp = PetscAbsScalar(*xx)) > max) max = tmp;
240: /* check special case of tmp == NaN */
241: if (tmp != tmp) {max = tmp; break;}
242: xx++;
243: }
244: VecRestoreArrayRead(xin,&xx);
245: *z = max;
246: } else if (type == NORM_1) {
247: #if defined(PETSC_USE_COMPLEX)
248: PetscReal tmp = 0.0;
249: PetscInt i;
250: #endif
251: VecGetArrayRead(xin,&xx);
252: #if defined(PETSC_USE_COMPLEX)
253: /* BLASasum() returns the nonstandard 1 norm of the 1 norm of the complex entries so we provide a custom loop instead */
254: for (i=0; i<n; i++) {
255: tmp += PetscAbsScalar(xx[i]);
256: }
257: *z = tmp;
258: #else
259: PetscStackCallBLAS("BLASasum",*z = BLASasum_(&bn,xx,&one));
260: #endif
261: VecRestoreArrayRead(xin,&xx);
262: PetscLogFlops(PetscMax(n-1.0,0.0));
263: } else if (type == NORM_1_AND_2) {
264: VecNorm_Seq(xin,NORM_1,z);
265: VecNorm_Seq(xin,NORM_2,z+1);
266: }
267: return(0);
268: }
270: PetscErrorCode VecView_Seq_ASCII(Vec xin,PetscViewer viewer)
271: {
272: PetscErrorCode ierr;
273: PetscInt i,n = xin->map->n;
274: const char *name;
275: PetscViewerFormat format;
276: const PetscScalar *xv;
279: VecGetArrayRead(xin,&xv);
280: PetscViewerGetFormat(viewer,&format);
281: if (format == PETSC_VIEWER_ASCII_MATLAB) {
282: PetscObjectGetName((PetscObject)xin,&name);
283: PetscViewerASCIIPrintf(viewer,"%s = [\n",name);
284: for (i=0; i<n; i++) {
285: #if defined(PETSC_USE_COMPLEX)
286: if (PetscImaginaryPart(xv[i]) > 0.0) {
287: PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei\n",(double)PetscRealPart(xv[i]),(double)PetscImaginaryPart(xv[i]));
288: } else if (PetscImaginaryPart(xv[i]) < 0.0) {
289: PetscViewerASCIIPrintf(viewer,"%18.16e - %18.16ei\n",(double)PetscRealPart(xv[i]),-(double)PetscImaginaryPart(xv[i]));
290: } else {
291: PetscViewerASCIIPrintf(viewer,"%18.16e\n",(double)PetscRealPart(xv[i]));
292: }
293: #else
294: PetscViewerASCIIPrintf(viewer,"%18.16e\n",(double) xv[i]);
295: #endif
296: }
297: PetscViewerASCIIPrintf(viewer,"];\n");
298: } else if (format == PETSC_VIEWER_ASCII_SYMMODU) {
299: for (i=0; i<n; i++) {
300: #if defined(PETSC_USE_COMPLEX)
301: PetscViewerASCIIPrintf(viewer,"%18.16e %18.16e\n",(double)PetscRealPart(xv[i]),(double)PetscImaginaryPart(xv[i]));
302: #else
303: PetscViewerASCIIPrintf(viewer,"%18.16e\n",(double)xv[i]);
304: #endif
305: }
306: } else if (format == PETSC_VIEWER_ASCII_VTK || format == PETSC_VIEWER_ASCII_VTK_CELL) {
307: /*
308: state 0: No header has been output
309: state 1: Only POINT_DATA has been output
310: state 2: Only CELL_DATA has been output
311: state 3: Output both, POINT_DATA last
312: state 4: Output both, CELL_DATA last
313: */
314: static PetscInt stateId = -1;
315: int outputState = 0;
316: PetscBool hasState;
317: int doOutput = 0;
318: PetscInt bs, b;
320: if (stateId < 0) {
321: PetscObjectComposedDataRegister(&stateId);
322: }
323: PetscObjectComposedDataGetInt((PetscObject) viewer, stateId, outputState, hasState);
324: if (!hasState) outputState = 0;
325: PetscObjectGetName((PetscObject) xin, &name);
326: VecGetBlockSize(xin, &bs);
327: if ((bs < 1) || (bs > 3)) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE, "VTK can only handle 3D objects, but vector dimension is %d", bs);
328: if (format == PETSC_VIEWER_ASCII_VTK) {
329: if (outputState == 0) {
330: outputState = 1;
331: doOutput = 1;
332: } else if (outputState == 1) doOutput = 0;
333: else if (outputState == 2) {
334: outputState = 3;
335: doOutput = 1;
336: } else if (outputState == 3) doOutput = 0;
337: else if (outputState == 4) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE, "Tried to output POINT_DATA again after intervening CELL_DATA");
339: if (doOutput) {
340: PetscViewerASCIIPrintf(viewer, "POINT_DATA %d\n", n/bs);
341: }
342: } else {
343: if (outputState == 0) {
344: outputState = 2;
345: doOutput = 1;
346: } else if (outputState == 1) {
347: outputState = 4;
348: doOutput = 1;
349: } else if (outputState == 2) doOutput = 0;
350: else if (outputState == 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE, "Tried to output CELL_DATA again after intervening POINT_DATA");
351: else if (outputState == 4) doOutput = 0;
353: if (doOutput) {
354: PetscViewerASCIIPrintf(viewer, "CELL_DATA %d\n", n);
355: }
356: }
357: PetscObjectComposedDataSetInt((PetscObject) viewer, stateId, outputState);
358: if (name) {
359: if (bs == 3) {
360: PetscViewerASCIIPrintf(viewer, "VECTORS %s double\n", name);
361: } else {
362: PetscViewerASCIIPrintf(viewer, "SCALARS %s double %d\n", name, bs);
363: }
364: } else {
365: PetscViewerASCIIPrintf(viewer, "SCALARS scalars double %d\n", bs);
366: }
367: if (bs != 3) {
368: PetscViewerASCIIPrintf(viewer, "LOOKUP_TABLE default\n");
369: }
370: for (i=0; i<n/bs; i++) {
371: for (b=0; b<bs; b++) {
372: if (b > 0) {
373: PetscViewerASCIIPrintf(viewer," ");
374: }
375: #if !defined(PETSC_USE_COMPLEX)
376: PetscViewerASCIIPrintf(viewer,"%g",(double)xv[i*bs+b]);
377: #endif
378: }
379: PetscViewerASCIIPrintf(viewer,"\n");
380: }
381: } else if (format == PETSC_VIEWER_ASCII_VTK_COORDS) {
382: PetscInt bs, b;
384: VecGetBlockSize(xin, &bs);
385: if ((bs < 1) || (bs > 3)) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE, "VTK can only handle 3D objects, but vector dimension is %d", bs);
386: for (i=0; i<n/bs; i++) {
387: for (b=0; b<bs; b++) {
388: if (b > 0) {
389: PetscViewerASCIIPrintf(viewer," ");
390: }
391: #if !defined(PETSC_USE_COMPLEX)
392: PetscViewerASCIIPrintf(viewer,"%g",(double)xv[i*bs+b]);
393: #endif
394: }
395: for (b=bs; b<3; b++) {
396: PetscViewerASCIIPrintf(viewer," 0.0");
397: }
398: PetscViewerASCIIPrintf(viewer,"\n");
399: }
400: } else if (format == PETSC_VIEWER_ASCII_PCICE) {
401: PetscInt bs, b;
403: VecGetBlockSize(xin, &bs);
404: if ((bs < 1) || (bs > 3)) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE, "PCICE can only handle up to 3D objects, but vector dimension is %d", bs);
405: PetscViewerASCIIPrintf(viewer,"%D\n", xin->map->N/bs);
406: for (i=0; i<n/bs; i++) {
407: PetscViewerASCIIPrintf(viewer,"%7D ", i+1);
408: for (b=0; b<bs; b++) {
409: if (b > 0) {
410: PetscViewerASCIIPrintf(viewer," ");
411: }
412: #if !defined(PETSC_USE_COMPLEX)
413: PetscViewerASCIIPrintf(viewer,"% 12.5E",(double)xv[i*bs+b]);
414: #endif
415: }
416: PetscViewerASCIIPrintf(viewer,"\n");
417: }
418: } else if (format == PETSC_VIEWER_ASCII_GLVIS) {
419: /* GLVis ASCII visualization/dump: this function mimicks mfem::GridFunction::Save() */
420: const PetscScalar *array;
421: PetscInt i,n,vdim, ordering = 1; /* mfem::FiniteElementSpace::Ordering::byVDIM */
422: PetscContainer glvis_container;
423: PetscViewerGLVisVecInfo glvis_vec_info;
424: PetscViewerGLVisInfo glvis_info;
425: PetscErrorCode ierr;
427: /* mfem::FiniteElementSpace::Save() */
428: VecGetBlockSize(xin,&vdim);
429: PetscViewerASCIIPrintf(viewer,"FiniteElementSpace\n");
430: PetscObjectQuery((PetscObject)xin,"_glvis_info_container",(PetscObject*)&glvis_container);
431: if (!glvis_container) SETERRQ(PetscObjectComm((PetscObject)xin),PETSC_ERR_PLIB,"Missing GLVis container");
432: PetscContainerGetPointer(glvis_container,(void**)&glvis_vec_info);
433: PetscViewerASCIIPrintf(viewer,"%s\n",glvis_vec_info->fec_type);
434: PetscViewerASCIIPrintf(viewer,"VDim: %d\n",vdim);
435: PetscViewerASCIIPrintf(viewer,"Ordering: %d\n",ordering);
436: PetscViewerASCIIPrintf(viewer,"\n");
437: /* mfem::Vector::Print() */
438: PetscObjectQuery((PetscObject)viewer,"_glvis_info_container",(PetscObject*)&glvis_container);
439: if (!glvis_container) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_PLIB,"Missing GLVis container");
440: PetscContainerGetPointer(glvis_container,(void**)&glvis_info);
441: if (glvis_info->enabled) {
442: VecGetLocalSize(xin,&n);
443: VecGetArrayRead(xin,&array);
444: for (i=0;i<n;i++) {
445: PetscViewerASCIIPrintf(viewer,glvis_info->fmt,(double)PetscRealPart(array[i]));
446: PetscViewerASCIIPrintf(viewer,"\n");
447: }
448: VecRestoreArrayRead(xin,&array);
449: }
450: } else if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
451: /* No info */
452: } else {
453: for (i=0; i<n; i++) {
454: if (format == PETSC_VIEWER_ASCII_INDEX) {
455: PetscViewerASCIIPrintf(viewer,"%D: ",i);
456: }
457: #if defined(PETSC_USE_COMPLEX)
458: if (PetscImaginaryPart(xv[i]) > 0.0) {
459: PetscViewerASCIIPrintf(viewer,"%g + %g i\n",(double)PetscRealPart(xv[i]),(double)PetscImaginaryPart(xv[i]));
460: } else if (PetscImaginaryPart(xv[i]) < 0.0) {
461: PetscViewerASCIIPrintf(viewer,"%g - %g i\n",(double)PetscRealPart(xv[i]),-(double)PetscImaginaryPart(xv[i]));
462: } else {
463: PetscViewerASCIIPrintf(viewer,"%g\n",(double)PetscRealPart(xv[i]));
464: }
465: #else
466: PetscViewerASCIIPrintf(viewer,"%g\n",(double)xv[i]);
467: #endif
468: }
469: }
470: PetscViewerFlush(viewer);
471: VecRestoreArrayRead(xin,&xv);
472: return(0);
473: }
475: #include <petscdraw.h>
476: PetscErrorCode VecView_Seq_Draw_LG(Vec xin,PetscViewer v)
477: {
478: PetscDraw draw;
479: PetscBool isnull;
480: PetscDrawLG lg;
481: PetscErrorCode ierr;
482: PetscInt i,c,bs = PetscAbs(xin->map->bs),n = xin->map->n/bs;
483: const PetscScalar *xv;
484: PetscReal *xx,*yy;
485: int colors[] = {PETSC_DRAW_RED};
488: PetscViewerDrawGetDraw(v,0,&draw);
489: PetscDrawIsNull(draw,&isnull);
490: if (isnull) return(0);
492: PetscMalloc2(n,&xx,n,&yy);
493: VecGetArrayRead(xin,&xv);
494: for (c=0; c<bs; c++) {
495: PetscViewerDrawGetDrawLG(v,c,&lg);
496: PetscDrawLGReset(lg);
497: PetscDrawLGSetDimension(lg,1);
498: PetscDrawLGSetColors(lg,colors);
499: for (i=0; i<n; i++) {
500: xx[i] = (PetscReal)i;
501: yy[i] = PetscRealPart(xv[c + i*bs]);
502: }
503: PetscDrawLGAddPoints(lg,n,&xx,&yy);
504: PetscDrawLGDraw(lg);
505: PetscDrawLGSave(lg);
506: }
507: VecRestoreArrayRead(xin,&xv);
508: PetscFree2(xx,yy);
509: return(0);
510: }
512: PetscErrorCode VecView_Seq_Draw(Vec xin,PetscViewer v)
513: {
514: PetscErrorCode ierr;
515: PetscDraw draw;
516: PetscBool isnull;
519: PetscViewerDrawGetDraw(v,0,&draw);
520: PetscDrawIsNull(draw,&isnull);
521: if (isnull) return(0);
522: PetscViewerPushFormat(v,PETSC_VIEWER_DRAW_LG);
523: VecView_Seq_Draw_LG(xin,v);
524: PetscViewerPopFormat(v);
525: return(0);
526: }
528: PetscErrorCode VecView_Seq_Binary(Vec xin,PetscViewer viewer)
529: {
530: PetscErrorCode ierr;
531: int fdes;
532: PetscInt n = xin->map->n,classid=VEC_FILE_CLASSID;
533: FILE *file;
534: const PetscScalar *xv;
535: #if defined(PETSC_HAVE_MPIIO)
536: PetscBool isMPIIO;
537: #endif
538: PetscBool skipHeader;
539: PetscViewerFormat format;
542: /* Write vector header */
543: PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);
544: if (!skipHeader) {
545: PetscViewerBinaryWrite(viewer,&classid,1,PETSC_INT,PETSC_FALSE);
546: PetscViewerBinaryWrite(viewer,&n,1,PETSC_INT,PETSC_FALSE);
547: }
549: /* Write vector contents */
550: #if defined(PETSC_HAVE_MPIIO)
551: PetscViewerBinaryGetUseMPIIO(viewer,&isMPIIO);
552: if (!isMPIIO) {
553: #endif
554: PetscViewerBinaryGetDescriptor(viewer,&fdes);
555: VecGetArrayRead(xin,&xv);
556: PetscBinaryWrite(fdes,(void*)xv,n,PETSC_SCALAR,PETSC_FALSE);
557: VecRestoreArrayRead(xin,&xv);
558: PetscViewerGetFormat(viewer,&format);
559: if (format == PETSC_VIEWER_BINARY_MATLAB) {
560: MPI_Comm comm;
561: FILE *info;
562: const char *name;
564: PetscObjectGetName((PetscObject)xin,&name);
565: PetscObjectGetComm((PetscObject)viewer,&comm);
566: PetscViewerBinaryGetInfoPointer(viewer,&info);
567: PetscFPrintf(comm,info,"#--- begin code written by PetscViewerBinary for MATLAB format ---#\n");
568: PetscFPrintf(comm,info,"#$$ Set.%s = PetscBinaryRead(fd);\n",name);
569: PetscFPrintf(comm,info,"#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n");
570: }
571: #if defined(PETSC_HAVE_MPIIO)
572: } else {
573: MPI_Offset off;
574: MPI_File mfdes;
575: PetscMPIInt lsize;
577: PetscMPIIntCast(n,&lsize);
578: PetscViewerBinaryGetMPIIODescriptor(viewer,&mfdes);
579: PetscViewerBinaryGetMPIIOOffset(viewer,&off);
580: MPI_File_set_view(mfdes,off,MPIU_SCALAR,MPIU_SCALAR,(char*)"native",MPI_INFO_NULL);
581: VecGetArrayRead(xin,&xv);
582: MPIU_File_write_all(mfdes,(void*)xv,lsize,MPIU_SCALAR,MPI_STATUS_IGNORE);
583: VecRestoreArrayRead(xin,&xv);
584: PetscViewerBinaryAddMPIIOOffset(viewer,n*sizeof(PetscScalar));
585: }
586: #endif
588: PetscViewerBinaryGetInfoPointer(viewer,&file);
589: if (file) {
590: if (((PetscObject)xin)->prefix) {
591: PetscFPrintf(PETSC_COMM_SELF,file,"-%svecload_block_size %D\n",((PetscObject)xin)->prefix,PetscAbs(xin->map->bs));
592: } else {
593: PetscFPrintf(PETSC_COMM_SELF,file,"-vecload_block_size %D\n",PetscAbs(xin->map->bs));
594: }
595: }
596: return(0);
597: }
599: #if defined(PETSC_HAVE_MATLAB_ENGINE)
600: #include <petscmatlab.h>
601: #include <mat.h> /* MATLAB include file */
602: PetscErrorCode VecView_Seq_Matlab(Vec vec,PetscViewer viewer)
603: {
604: PetscErrorCode ierr;
605: PetscInt n;
606: const PetscScalar *array;
609: VecGetLocalSize(vec,&n);
610: PetscObjectName((PetscObject)vec);
611: VecGetArrayRead(vec,&array);
612: PetscViewerMatlabPutArray(viewer,n,1,array,((PetscObject)vec)->name);
613: VecRestoreArrayRead(vec,&array);
614: return(0);
615: }
616: #endif
618: PETSC_EXTERN PetscErrorCode VecView_Seq(Vec xin,PetscViewer viewer)
619: {
621: PetscBool isdraw,iascii,issocket,isbinary;
622: #if defined(PETSC_HAVE_MATHEMATICA)
623: PetscBool ismathematica;
624: #endif
625: #if defined(PETSC_HAVE_MATLAB_ENGINE)
626: PetscBool ismatlab;
627: #endif
628: #if defined(PETSC_HAVE_HDF5)
629: PetscBool ishdf5;
630: #endif
631: PetscBool isglvis;
632: #if defined(PETSC_HAVE_ADIOS)
633: PetscBool isadios;
634: #endif
635: #if defined(PETSC_HAVE_ADIOS2)
636: PetscBool isadios2;
637: #endif
640: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);
641: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);
642: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);
643: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);
644: #if defined(PETSC_HAVE_MATHEMATICA)
645: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERMATHEMATICA,&ismathematica);
646: #endif
647: #if defined(PETSC_HAVE_HDF5)
648: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5);
649: #endif
650: #if defined(PETSC_HAVE_MATLAB_ENGINE)
651: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERMATLAB,&ismatlab);
652: #endif
653: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERGLVIS,&isglvis);
654: #if defined(PETSC_HAVE_ADIOS)
655: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERADIOS,&isadios);
656: #endif
657: #if defined(PETSC_HAVE_ADIOS2)
658: PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERADIOS2,&isadios2);
659: #endif
661: if (isdraw) {
662: VecView_Seq_Draw(xin,viewer);
663: } else if (iascii) {
664: VecView_Seq_ASCII(xin,viewer);
665: } else if (isbinary) {
666: VecView_Seq_Binary(xin,viewer);
667: #if defined(PETSC_HAVE_MATHEMATICA)
668: } else if (ismathematica) {
669: PetscViewerMathematicaPutVector(viewer,xin);
670: #endif
671: #if defined(PETSC_HAVE_HDF5)
672: } else if (ishdf5) {
673: VecView_MPI_HDF5(xin,viewer); /* Reusing VecView_MPI_HDF5 ... don't want code duplication*/
674: #endif
675: #if defined(PETSC_HAVE_ADIOS)
676: } else if (isadios) {
677: VecView_MPI_ADIOS(xin,viewer); /* Reusing VecView_MPI_ADIOS ... don't want code duplication*/
678: #endif
679: #if defined(PETSC_HAVE_ADIOS2)
680: } else if (isadios2) {
681: VecView_MPI_ADIOS2(xin,viewer); /* Reusing VecView_MPI_ADIOS2 ... don't want code duplication*/
682: #endif
683: #if defined(PETSC_HAVE_MATLAB_ENGINE)
684: } else if (ismatlab) {
685: VecView_Seq_Matlab(xin,viewer);
686: #endif
687: } else if (isglvis) {
688: VecView_GLVis(xin,viewer);
689: }
690: return(0);
691: }
693: PetscErrorCode VecGetValues_Seq(Vec xin,PetscInt ni,const PetscInt ix[],PetscScalar y[])
694: {
695: const PetscScalar *xx;
696: PetscInt i;
697: PetscErrorCode ierr;
700: VecGetArrayRead(xin,&xx);
701: for (i=0; i<ni; i++) {
702: if (xin->stash.ignorenegidx && ix[i] < 0) continue;
703: #if defined(PETSC_USE_DEBUG)
704: if (ix[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D cannot be negative",ix[i]);
705: if (ix[i] >= xin->map->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D to large maximum allowed %D",ix[i],xin->map->n);
706: #endif
707: y[i] = xx[ix[i]];
708: }
709: VecRestoreArrayRead(xin,&xx);
710: return(0);
711: }
713: PetscErrorCode VecSetValues_Seq(Vec xin,PetscInt ni,const PetscInt ix[],const PetscScalar y[],InsertMode m)
714: {
715: PetscScalar *xx;
716: PetscInt i;
720: VecGetArray(xin,&xx);
721: if (m == INSERT_VALUES) {
722: for (i=0; i<ni; i++) {
723: if (xin->stash.ignorenegidx && ix[i] < 0) continue;
724: #if defined(PETSC_USE_DEBUG)
725: if (ix[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D cannot be negative",ix[i]);
726: if (ix[i] >= xin->map->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D maximum %D",ix[i],xin->map->n);
727: #endif
728: xx[ix[i]] = y[i];
729: }
730: } else {
731: for (i=0; i<ni; i++) {
732: if (xin->stash.ignorenegidx && ix[i] < 0) continue;
733: #if defined(PETSC_USE_DEBUG)
734: if (ix[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D cannot be negative",ix[i]);
735: if (ix[i] >= xin->map->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D maximum %D",ix[i],xin->map->n);
736: #endif
737: xx[ix[i]] += y[i];
738: }
739: }
740: VecRestoreArray(xin,&xx);
741: return(0);
742: }
744: PetscErrorCode VecSetValuesBlocked_Seq(Vec xin,PetscInt ni,const PetscInt ix[],const PetscScalar yin[],InsertMode m)
745: {
746: PetscScalar *xx,*y = (PetscScalar*)yin;
747: PetscInt i,bs,start,j;
750: /*
751: For optimization could treat bs = 2, 3, 4, 5 as special cases with loop unrolling
752: */
754: VecGetBlockSize(xin,&bs);
755: VecGetArray(xin,&xx);
756: if (m == INSERT_VALUES) {
757: for (i=0; i<ni; i++, y+=bs) {
758: start = bs*ix[i];
759: if (start < 0) continue;
760: #if defined(PETSC_USE_DEBUG)
761: if (start >= xin->map->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D maximum %D",start,xin->map->n);
762: #endif
763: for (j=0; j<bs; j++) xx[start+j] = y[j];
764: }
765: } else {
766: for (i=0; i<ni; i++, y+=bs) {
767: start = bs*ix[i];
768: if (start < 0) continue;
769: #if defined(PETSC_USE_DEBUG)
770: if (start >= xin->map->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D maximum %D",start,xin->map->n);
771: #endif
772: for (j=0; j<bs; j++) xx[start+j] += y[j];
773: }
774: }
775: VecRestoreArray(xin,&xx);
776: return(0);
777: }
779: PetscErrorCode VecDestroy_Seq(Vec v)
780: {
781: Vec_Seq *vs = (Vec_Seq*)v->data;
785: #if defined(PETSC_USE_LOG)
786: PetscLogObjectState((PetscObject)v,"Length=%D",v->map->n);
787: #endif
788: PetscFree(vs->array_allocated);
789: PetscFree(v->data);
790: return(0);
791: }
793: PetscErrorCode VecSetOption_Seq(Vec v,VecOption op,PetscBool flag)
794: {
796: if (op == VEC_IGNORE_NEGATIVE_INDICES) v->stash.ignorenegidx = flag;
797: return(0);
798: }
800: PetscErrorCode VecDuplicate_Seq(Vec win,Vec *V)
801: {
805: VecCreate(PetscObjectComm((PetscObject)win),V);
806: VecSetSizes(*V,win->map->n,win->map->n);
807: VecSetType(*V,((PetscObject)win)->type_name);
808: PetscLayoutReference(win->map,&(*V)->map);
809: PetscObjectListDuplicate(((PetscObject)win)->olist,&((PetscObject)(*V))->olist);
810: PetscFunctionListDuplicate(((PetscObject)win)->qlist,&((PetscObject)(*V))->qlist);
812: (*V)->ops->view = win->ops->view;
813: (*V)->stash.ignorenegidx = win->stash.ignorenegidx;
814: return(0);
815: }
817: static struct _VecOps DvOps = {VecDuplicate_Seq, /* 1 */
818: VecDuplicateVecs_Default,
819: VecDestroyVecs_Default,
820: VecDot_Seq,
821: VecMDot_Seq,
822: VecNorm_Seq,
823: VecTDot_Seq,
824: VecMTDot_Seq,
825: VecScale_Seq,
826: VecCopy_Seq, /* 10 */
827: VecSet_Seq,
828: VecSwap_Seq,
829: VecAXPY_Seq,
830: VecAXPBY_Seq,
831: VecMAXPY_Seq,
832: VecAYPX_Seq,
833: VecWAXPY_Seq,
834: VecAXPBYPCZ_Seq,
835: VecPointwiseMult_Seq,
836: VecPointwiseDivide_Seq,
837: VecSetValues_Seq, /* 20 */
838: 0,0,
839: 0,
840: VecGetSize_Seq,
841: VecGetSize_Seq,
842: 0,
843: VecMax_Seq,
844: VecMin_Seq,
845: VecSetRandom_Seq,
846: VecSetOption_Seq, /* 30 */
847: VecSetValuesBlocked_Seq,
848: VecDestroy_Seq,
849: VecView_Seq,
850: VecPlaceArray_Seq,
851: VecReplaceArray_Seq,
852: VecDot_Seq,
853: VecTDot_Seq,
854: VecNorm_Seq,
855: VecMDot_Seq,
856: VecMTDot_Seq, /* 40 */
857: VecLoad_Default,
858: VecReciprocal_Default,
859: VecConjugate_Seq,
860: 0,
861: 0,
862: VecResetArray_Seq,
863: 0,
864: VecMaxPointwiseDivide_Seq,
865: VecPointwiseMax_Seq,
866: VecPointwiseMaxAbs_Seq,
867: VecPointwiseMin_Seq,
868: VecGetValues_Seq,
869: 0,
870: 0,
871: 0,
872: 0,
873: 0,
874: 0,
875: VecStrideGather_Default,
876: VecStrideScatter_Default,
877: 0,
878: 0,
879: 0,
880: 0,
881: 0,
882: VecStrideSubSetGather_Default,
883: VecStrideSubSetScatter_Default,
884: 0,
885: 0
886: };
889: /*
890: This is called by VecCreate_Seq() (i.e. VecCreateSeq()) and VecCreateSeqWithArray()
891: */
892: PetscErrorCode VecCreate_Seq_Private(Vec v,const PetscScalar array[])
893: {
894: Vec_Seq *s;
898: PetscNewLog(v,&s);
899: PetscMemcpy(v->ops,&DvOps,sizeof(DvOps));
901: v->data = (void*)s;
902: v->petscnative = PETSC_TRUE;
903: s->array = (PetscScalar*)array;
904: s->array_allocated = 0;
906: PetscLayoutSetUp(v->map);
907: PetscObjectChangeTypeName((PetscObject)v,VECSEQ);
908: #if defined(PETSC_HAVE_MATLAB_ENGINE)
909: PetscObjectComposeFunction((PetscObject)v,"PetscMatlabEnginePut_C",VecMatlabEnginePut_Default);
910: PetscObjectComposeFunction((PetscObject)v,"PetscMatlabEngineGet_C",VecMatlabEngineGet_Default);
911: #endif
912: return(0);
913: }
915: /*@C
916: VecCreateSeqWithArray - Creates a standard,sequential array-style vector,
917: where the user provides the array space to store the vector values.
919: Collective on MPI_Comm
921: Input Parameter:
922: + comm - the communicator, should be PETSC_COMM_SELF
923: . bs - the block size
924: . n - the vector length
925: - array - memory where the vector elements are to be stored.
927: Output Parameter:
928: . V - the vector
930: Notes:
931: Use VecDuplicate() or VecDuplicateVecs() to form additional vectors of the
932: same type as an existing vector.
934: If the user-provided array is NULL, then VecPlaceArray() can be used
935: at a later stage to SET the array for storing the vector values.
937: PETSc does NOT free the array when the vector is destroyed via VecDestroy().
938: The user should not free the array until the vector is destroyed.
940: Level: intermediate
942: Concepts: vectors^creating with array
944: .seealso: VecCreateMPIWithArray(), VecCreate(), VecDuplicate(), VecDuplicateVecs(),
945: VecCreateGhost(), VecCreateSeq(), VecPlaceArray()
946: @*/
947: PetscErrorCode VecCreateSeqWithArray(MPI_Comm comm,PetscInt bs,PetscInt n,const PetscScalar array[],Vec *V)
948: {
950: PetscMPIInt size;
953: VecCreate(comm,V);
954: VecSetSizes(*V,n,n);
955: VecSetBlockSize(*V,bs);
956: MPI_Comm_size(comm,&size);
957: if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot create VECSEQ on more than one process");
958: VecCreate_Seq_Private(*V,array);
959: return(0);
960: }